Cow genome map
| Conread name: | Lng1-LNG010014A07 |
| Conread position: | 1-126 |
| Cow position: | chr28:2752539-2752666 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 92 |
| Conread position: | 1-141 |
| Cow position: | chr28:3105206-3105053 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-141 |
| Cow position: | chr28:18760092-18760228 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 1-146 |
| Cow position: | chr28:20313231-20313084 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 1-146 |
| Cow position: | chr28:21380834-21380684 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 1-148 |
| Cow position: | chr28:2898954-2898803 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-148 |
| Cow position: | chr28:7698024-7698175 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-148 |
| Cow position: | chr28:10745168-10745017 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-148 |
| Cow position: | chr28:13267742-13267589 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 45, 69 |
| Conread position: | 1-148 |
| Cow position: | chr28:15272306-15272453 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-148 |
| Cow position: | chr28:24996633-24996781 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 89, 97 |
| Conread position: | 1-150 |
| Cow position: | chr28:15374866-15375020 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 1-151 |
| Cow position: | chr28:26340298-26340141 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-151 |
| Cow position: | chr28:26743580-26743426 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 96 |
| Conread position: | 2-148 |
| Cow position: | chr28:21355178-21355032 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 80 |
| Conread position: | 5-137 |
| Cow position: | chr28:118100-118237 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 5-145 |
| Cow position: | chr28:23410373-23410513 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 5-148 |
| Cow position: | chr28:15263765-15263917 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 5-148 |
| Cow position: | chr28:16252908-16253050 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 5-148 |
| Cow position: | chr28:19222644-19222790 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 6-148 |
| Cow position: | chr28:5773587-5773447 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 6-151 |
| Cow position: | chr28:12951380-12951237 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 7-141 |
| Cow position: | chr28:22321376-22321236 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 7-146 |
| Cow position: | chr28:21103886-21104038 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 7-146 |
| Cow position: | chr28:26103658-26103525 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 7-148 |
| Cow position: | chr28:11451513-11451659 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 7-148 |
| Cow position: | chr28:22170766-22170910 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 7-150 |
| Cow position: | chr28:34230181-34230035 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 85 |
| Conread position: | 8-148 |
| Cow position: | chr28:3143937-3144084 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 14-129 |
| Cow position: | chr28:26264749-26264630 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 14-148 |
| Cow position: | chr28:18625172-18625030 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 14-151 |
| Cow position: | chr28:4057924-4057791 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 19-146 |
| Cow position: | chr28:15043924-15044049 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 20-141 |
| Cow position: | chr28:22279260-22279378 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 20-148 |
| Cow position: | chr28:22485185-22485055 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 119 |
| Conread position: | 25-148 |
| Cow position: | chr28:3161138-3161261 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-146 |
| Cow position: | chr28:11827423-11827303 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 110-469 |
| Cow position: | chr28:25849843-25850190 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 110-825 |
| Cow position: | chr28:12701149-12701861 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 110-825 |
| Cow position: | chr28:24992769-24993481 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 132-827 |
| Cow position: | chr28:26923327-26922631 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 9 |
| Conread position: | 133-827 |
| Cow position: | chr28:25826817-25826122 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 241 |
| Conread position: | 136-816 |
| Cow position: | chr28:29435502-29434822 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 228 |
| Conread position: | 137-706 |
| Cow position: | chr28:23675120-23675672 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 137-815 |
| Cow position: | chr28:2223059-2222384 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 202 |
| Conread position: | 137-822 |
| Cow position: | chr28:3745268-3745939 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 137-825 |
| Cow position: | chr28:14150294-14150973 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 195 |
| Conread position: | 137-827 |
| Cow position: | chr28:34082966-34082277 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 216 |
| Conread position: | 138-595 |
| Cow position: | chr28:30870378-30870828 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 221 |
| Conread position: | 138-787 |
| Cow position: | chr28:5772723-5773361 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 55 |
| Conread position: | 138-825 |
| Cow position: | chr28:21362816-21363497 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 145-531 |
| Cow position: | chr28:25408950-25409326 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 43 |
| Conread position: | 146-466 |
| Cow position: | chr28:10578783-10578467 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 207 |
| Conread position: | 146-773 |
| Cow position: | chr28:30031657-30032276 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 196 |
| Conread position: | 159-461 |
| Cow position: | chr28:3652930-3653220 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 175 |
| Conread position: | 159-815 |
| Cow position: | chr28:12081598-12080944 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 160-662 |
| Cow position: | chr28:17686312-17685821 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 192 |
| Conread position: | 166-820 |
| Cow position: | chr28:28437673-28438302 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 175 |
| Conread position: | 166-827 |
| Cow position: | chr28:26984597-26983910 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 13 |
| Conread position: | 171-827 |
| Cow position: | chr28:11787615-11786965 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 118 |
| Conread position: | 173-580 |
| Cow position: | chr28:30960882-30961276 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 177 |
| Conread position: | 174-778 |
| Cow position: | chr28:23620296-23620874 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 181-825 |
| Cow position: | chr28:25726476-25727120 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 159 |
| Conread position: | 183-667 |
| Cow position: | chr28:13357607-13357136 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 99 |
| Conread position: | 193-482 |
| Cow position: | chr28:2122924-2123200 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 150 |
| Conread position: | 214-827 |
| Cow position: | chr28:13242926-13242319 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 35 |
| Conread position: | 216-531 |
| Cow position: | chr28:34850540-34850845 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 134 |
| Conread position: | 217-465 |
| Cow position: | chr28:10643156-10642916 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 45, 139 |
| Conread position: | 226-823 |
| Cow position: | chr28:10530325-10529731 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 121 |
| Conread position: | 240-796 |
| Cow position: | chr28:330397-329851 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 99 |
| Conread position: | 266-823 |
| Cow position: | chr28:23025956-23026526 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 166 |
| Conread position: | 287-712 |
| Cow position: | chr28:9184975-9184566 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 42 |
| Conread position: | 295-725 |
| Cow position: | chr28:19023880-19023443 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 9 |
| Conread position: | 297-825 |
| Cow position: | chr28:15604983-15605517 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 114 |
| Conread position: | 298-600 |
| Cow position: | chr28:22353588-22353875 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 39 |
| Conread position: | 322-535 |
| Cow position: | chr28:22171616-22171409 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 327-747 |
| Cow position: | chr28:30069297-30068880 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 9 |
| Conread position: | 341-693 |
| Cow position: | chr28:10600473-10600829 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 343-825 |
| Cow position: | chr28:5770627-5771105 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 344-825 |
| Cow position: | chr28:3913976-3914449 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 31 |
| Conread position: | 349-800 |
| Cow position: | chr28:7697732-7697285 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 380-825 |
| Cow position: | chr28:29682786-29683231 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 38 |
Show alignments to all cow chromosomes.