Cow genome map

Conread name: Lng1-LNG010014A07

Conread position: 1-116
Cow position: chr6:31814748-31814863 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-137
Cow position: chr6:9219263-9219126 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 1-140
Cow position: chr6:416089-415944 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 1-140
Cow position: chr6:15242822-15242682 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 64

Conread position: 1-142
Cow position: chr6:48988430-48988283 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 1-144
Cow position: chr6:57299008-57298866 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 119

Conread position: 1-145
Cow position: chr6:445311-445156 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 1-145
Cow position: chr6:8804540-8804683 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 58, 106

Conread position: 1-147
Cow position: chr6:53731512-53731364 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 69

Conread position: 1-147
Cow position: chr6:62324983-62324834 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 1-148
Cow position: chr6:457168-457028 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 1-148
Cow position: chr6:1770208-1770357 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 103, 65

Conread position: 1-148
Cow position: chr6:2607605-2607455 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 67

Conread position: 1-148
Cow position: chr6:3952508-3952364 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 1-148
Cow position: chr6:6227008-6226866 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 96, 31

Conread position: 1-148
Cow position: chr6:7190129-7190277 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 55, 81

Conread position: 1-148
Cow position: chr6:9008621-9008769 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 1-148
Cow position: chr6:10332100-10332254 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 42, 85

Conread position: 1-148
Cow position: chr6:12337979-12337826 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 1-148
Cow position: chr6:17334063-17334215 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 1-148
Cow position: chr6:33277033-33276881 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 70

Conread position: 1-148
Cow position: chr6:35471529-35471681 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 46, 68

Conread position: 1-148
Cow position: chr6:38641484-38641340 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 92

Conread position: 1-148
Cow position: chr6:39994471-39994619 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 64

Conread position: 1-148
Cow position: chr6:42565679-42565527 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 47, 70

Conread position: 1-148
Cow position: chr6:46292357-46292496 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 1-148
Cow position: chr6:46865599-46865751 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 1-148
Cow position: chr6:53519632-53519781 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 7, 65

Conread position: 1-148
Cow position: chr6:54867504-54867352 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 47, 69

Conread position: 1-148
Cow position: chr6:54884920-54885071 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 1-148
Cow position: chr6:59620659-59620511 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 1-148
Cow position: chr6:60783859-60783712 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 59, 99

Conread position: 1-148
Cow position: chr6:61575599-61575445 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 53, 69

Conread position: 1-148
Cow position: chr6:61631618-61631771 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 48, 69

Conread position: 1-150
Cow position: chr6:24327151-24327298 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 66

Conread position: 1-150
Cow position: chr6:50746977-50746820 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 1-150
Cow position: chr6:57164417-57164267 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 60, 129

Conread position: 1-151
Cow position: chr6:53138931-53139090 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 1-151
Cow position: chr6:58076219-58076063 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 47, 13

Conread position: 1-154
Cow position: chr6:64449382-64449224 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 2-187
Cow position: chr6:12542944-12543136 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 3-148
Cow position: chr6:14201689-14201540 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 5-137
Cow position: chr6:65903634-65903764 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 5-137
Cow position: chr6:65904285-65904415 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 5-148
Cow position: chr6:6460529-6460381 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 44, 64

Conread position: 7-137
Cow position: chr6:54036155-54036282 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 7-146
Cow position: chr6:20230844-20230982 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 85

Conread position: 7-148
Cow position: chr6:37149172-37149035 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 41, 63

Conread position: 7-150
Cow position: chr6:20605920-20605773 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 61

Conread position: 7-150
Cow position: chr6:61515207-61515358 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 7-151
Cow position: chr6:55763839-55763693 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 37, 64

Conread position: 8-141
Cow position: chr6:7694365-7694506 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 14-137
Cow position: chr6:22254007-22254134 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 14-141
Cow position: chr6:19329778-19329905 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 90, 53

Conread position: 14-142
Cow position: chr6:17345343-17345218 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 14-151
Cow position: chr6:10605665-10605524 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 89, 0

Conread position: 18-148
Cow position: chr6:59015585-59015719 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 31, 74

Conread position: 19-148
Cow position: chr6:33917879-33918009 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 90, 46

Conread position: 20-133
Cow position: chr6:61113728-61113607 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 20-146
Cow position: chr6:60474109-60473979 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 20-148
Cow position: chr6:7989438-7989574 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 20-148
Cow position: chr6:66131277-66131150 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 29, 103

Conread position: 34-148
Cow position: chr6:5958063-5958181 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 110-676
Cow position: chr6:888768-889325 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 16

Conread position: 110-765
Cow position: chr6:51876972-51877614 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 16

Conread position: 110-825
Cow position: chr6:19718796-19719493 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 16

Conread position: 120-827
Cow position: chr6:45618375-45617665 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 262

Conread position: 133-423
Cow position: chr6:17149937-17149657 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 150

Conread position: 133-580
Cow position: chr6:48947427-48946978 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 153

Conread position: 133-825
Cow position: chr6:12388225-12387547 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 27

Conread position: 133-826
Cow position: chr6:24623910-24623209 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 36

Conread position: 135-819
Cow position: chr6:6471703-6471006 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 305

Conread position: 136-532
Cow position: chr6:30316707-30316304 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 21

Conread position: 137-423
Cow position: chr6:38438840-38439131 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 219

Conread position: 137-604
Cow position: chr6:14897415-14897878 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 43

Conread position: 137-669
Cow position: chr6:33300900-33301431 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 213

Conread position: 138-660
Cow position: chr6:43797666-43797145 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 199

Conread position: 141-676
Cow position: chr6:14851509-14850991 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 44

Conread position: 145-466
Cow position: chr6:11638963-11638650 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 48

Conread position: 146-814
Cow position: chr6:35873485-35872825 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 202

Conread position: 146-825
Cow position: chr6:14928703-14929367 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 58

Conread position: 146-825
Cow position: chr6:24242531-24243202 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 205

Conread position: 150-825
Cow position: chr6:33949911-33949228 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 90

Conread position: 151-827
Cow position: chr6:46293200-46292554 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 37

Conread position: 166-819
Cow position: chr6:6163382-6164011 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 29

Conread position: 168-649
Cow position: chr6:35825309-35825780 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 128

Conread position: 171-606
Cow position: chr6:52245770-52246194 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 170

Conread position: 176-816
Cow position: chr6:45065880-45065268 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 44

Conread position: 179-460
Cow position: chr6:68047641-68047371 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 123

Conread position: 180-613
Cow position: chr6:8535516-8535092 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 59

Conread position: 218-650
Cow position: chr6:31880471-31880045 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 73

Conread position: 225-517
Cow position: chr6:18969853-18969581 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 37, 111

Conread position: 234-827
Cow position: chr6:47977266-47977855 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 116

Conread position: 263-605
Cow position: chr6:32125310-32125647 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 78

Conread position: 263-824
Cow position: chr6:48568126-48567570 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 66

Conread position: 307-823
Cow position: chr6:39359070-39358568 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 30

Conread position: 335-825
Cow position: chr6:49411396-49410911 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 90

Conread position: 353-825
Cow position: chr6:17556693-17557148 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 70

Conread position: 364-827
Cow position: chr6:529393-528927 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 11

Show alignments to all cow chromosomes.