Cow genome map

Conread name: Lng1-LNG010014A07

Conread position: 1-141
Cow position: chr9:7363103-7363247 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 48, 27

Conread position: 1-142
Cow position: chr9:10308930-10308787 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 42, 69

Conread position: 1-144
Cow position: chr9:9199702-9199561 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 29, 65

Conread position: 1-144
Cow position: chr9:31347034-31347177 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 104
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-146
Cow position: chr9:10010880-10011025 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 47, 112

Conread position: 1-148
Cow position: chr9:1520659-1520503 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 1-148
Cow position: chr9:5393127-5393278 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 108, 0

Conread position: 1-148
Cow position: chr9:6225375-6225225 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 43, 70

Conread position: 1-148
Cow position: chr9:7409856-7410009 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 1-148
Cow position: chr9:19539168-19539324 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 1-148
Cow position: chr9:28726642-28726496 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 47, 71

Conread position: 1-148
Cow position: chr9:31077602-31077451 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 1-148
Cow position: chr9:33598059-33598208 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 69

Conread position: 1-148
Cow position: chr9:41789363-41789506 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 67

Conread position: 1-148
Cow position: chr9:42445901-42445755 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 62

Conread position: 1-148
Cow position: chr9:52505232-52505076 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 1-148
Cow position: chr9:55084219-55084070 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 1-150
Cow position: chr9:50080968-50080817 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 69

Conread position: 1-152
Cow position: chr9:28735558-28735709 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 48, 62

Conread position: 2-141
Cow position: chr9:49764736-49764876 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 105, 0

Conread position: 2-148
Cow position: chr9:1952189-1952042 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 4-118
Cow position: chr9:49279556-49279671 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 5-148
Cow position: chr9:6840084-6840238 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 5-148
Cow position: chr9:38343973-38344121 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 64

Conread position: 5-148
Cow position: chr9:41412229-41412086 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 7-146
Cow position: chr9:36445713-36445848 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 7-148
Cow position: chr9:3070336-3070196 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 39, 96

Conread position: 7-148
Cow position: chr9:5433722-5433862 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 53, 92

Conread position: 7-148
Cow position: chr9:10877787-10877639 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 7-148
Cow position: chr9:15983000-15982851 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 7-148
Cow position: chr9:18002867-18002722 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 120
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 42, 0

Conread position: 7-148
Cow position: chr9:35533868-35533724 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 41, 64

Conread position: 7-148
Cow position: chr9:41995794-41995941 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 57

Conread position: 7-148
Cow position: chr9:50977163-50977019 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 60, 0

Conread position: 7-148
Cow position: chr9:55075049-55074908 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 106

Conread position: 7-150
Cow position: chr9:44467268-44467120 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 42, 62

Conread position: 7-151
Cow position: chr9:33681768-33681914 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 124

Conread position: 8-148
Cow position: chr9:32812430-32812575 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 9-148
Cow position: chr9:5227084-5226937 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 9-148
Cow position: chr9:20318490-20318351 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 14-148
Cow position: chr9:43623349-43623487 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 14-150
Cow position: chr9:49983008-49982868 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 18-148
Cow position: chr9:31662559-31662697 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 19-148
Cow position: chr9:9416308-9416180 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 52

Conread position: 20-143
Cow position: chr9:26440705-26440574 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 33-148
Cow position: chr9:13994299-13994415 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 76, 9

Conread position: 107-520
Cow position: chr9:13492892-13493271 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 19

Conread position: 118-546
Cow position: chr9:33068356-33067925 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 250

Conread position: 130-825
Cow position: chr9:1519748-1520433 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 46

Conread position: 133-544
Cow position: chr9:26576859-26577255 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 43

Conread position: 133-773
Cow position: chr9:59540602-59541220 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 76

Conread position: 133-825
Cow position: chr9:52408171-52407466 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 315

Conread position: 134-713
Cow position: chr9:34567804-34568373 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 104

Conread position: 137-406
Cow position: chr9:9623101-9623362 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 207
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 7, 59

Conread position: 137-411
Cow position: chr9:20409532-20409801 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 142

Conread position: 137-423
Cow position: chr9:10678766-10678486 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 75, 204

Conread position: 137-423
Cow position: chr9:55796942-55796645 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 43

Conread position: 137-463
Cow position: chr9:25547990-25547656 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 300

Conread position: 137-606
Cow position: chr9:4284388-4284849 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 20

Conread position: 137-642
Cow position: chr9:29193406-29192909 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 184

Conread position: 138-825
Cow position: chr9:22755760-22755086 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 165

Conread position: 141-519
Cow position: chr9:30139443-30139073 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 28

Conread position: 141-825
Cow position: chr9:6365545-6366241 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 21

Conread position: 142-427
Cow position: chr9:2873643-2873929 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 210

Conread position: 145-815
Cow position: chr9:34900649-34901302 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 59

Conread position: 146-825
Cow position: chr9:772075-771398 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 205

Conread position: 147-543
Cow position: chr9:55621446-55621074 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 27

Conread position: 147-827
Cow position: chr9:30281842-30281162 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 150-517
Cow position: chr9:33999414-33999771 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 29

Conread position: 150-821
Cow position: chr9:3960008-3959351 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 92

Conread position: 150-825
Cow position: chr9:42696148-42696820 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 193

Conread position: 154-665
Cow position: chr9:43670035-43670528 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 187

Conread position: 165-525
Cow position: chr9:17307000-17307354 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 79

Conread position: 170-669
Cow position: chr9:64054643-64055127 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 165

Conread position: 175-791
Cow position: chr9:36844738-36844126 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 182

Conread position: 182-827
Cow position: chr9:42957288-42956638 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 133

Conread position: 194-472
Cow position: chr9:11410423-11410691 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 18, 156

Conread position: 196-612
Cow position: chr9:30020925-30021331 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 155

Conread position: 200-805
Cow position: chr9:35225794-35225191 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 15

Conread position: 207-423
Cow position: chr9:23044043-23043830 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 63, 36

Conread position: 216-825
Cow position: chr9:13185840-13186431 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 46

Conread position: 222-536
Cow position: chr9:25959424-25959117 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 118

Conread position: 226-382
Cow position: chr9:47996153-47996002 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 36, 124

Conread position: 228-561
Cow position: chr9:9752005-9752317 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 26

Conread position: 247-799
Cow position: chr9:18092809-18093319 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 368
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 26, 17

Conread position: 265-605
Cow position: chr9:52666557-52666886 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 232
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 117, 72

Conread position: 272-595
Cow position: chr9:26064428-26064741 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 75

Conread position: 284-825
Cow position: chr9:64049710-64050264 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 146

Conread position: 288-667
Cow position: chr9:44409130-44408761 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 59

Conread position: 289-519
Cow position: chr9:61023636-61023413 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 92, 40

Conread position: 298-725
Cow position: chr9:5346077-5345663 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 49

Conread position: 339-604
Cow position: chr9:18420158-18419899 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 75

Conread position: 346-822
Cow position: chr9:48774106-48773623 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 74

Conread position: 349-825
Cow position: chr9:15805150-15805625 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 78

Conread position: 349-827
Cow position: chr9:10354782-10355263 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 61

Conread position: 353-541
Cow position: chr9:55322472-55322285 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 31, 74

Conread position: 362-723
Cow position: chr9:61198154-61197794 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 60

Conread position: 365-826
Cow position: chr9:44821550-44822011 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 60

Conread position: 370-831
Cow position: chr9:8234886-8234419 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 33

Conread position: 377-825
Cow position: chr9:17871062-17871507 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 46

Show alignments to all cow chromosomes.