Cow genome map

Conread name: Lng1-LNG010014A07

Conread position: 1-118
Cow position: chrX:35681318-35681195 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 1-122
Cow position: chrX:29723719-29723596 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 69

Conread position: 1-125
Cow position: chrX:12405406-12405539 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 1-140
Cow position: chrX:38094544-38094690 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 70

Conread position: 1-141
Cow position: chrX:33466587-33466449 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 53, 67

Conread position: 1-141
Cow position: chrX:44396995-44396857 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 106, 0

Conread position: 1-146
Cow position: chrX:27509046-27509189 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 1-147
Cow position: chrX:10831516-10831667 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 1-148
Cow position: chrX:14599510-14599358 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 1-148
Cow position: chrX:14924978-14924828 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 47, 64

Conread position: 1-148
Cow position: chrX:15485647-15485798 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 1-148
Cow position: chrX:16416485-16416335 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 108, 66

Conread position: 1-148
Cow position: chrX:17662616-17662768 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 68

Conread position: 1-148
Cow position: chrX:22813044-22812889 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 19

Conread position: 1-148
Cow position: chrX:23563813-23563968 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 1-148
Cow position: chrX:28846904-28847050 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 69

Conread position: 1-148
Cow position: chrX:29509464-29509615 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 1-148
Cow position: chrX:29601853-29602004 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 47, 68

Conread position: 1-148
Cow position: chrX:32020142-32020293 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 1-148
Cow position: chrX:34441474-34441623 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 1-148
Cow position: chrX:35609966-35609815 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 48, 69

Conread position: 1-148
Cow position: chrX:36961620-36961464 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 127
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 47, 0

Conread position: 1-148
Cow position: chrX:38439455-38439303 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 48, 68

Conread position: 1-148
Cow position: chrX:38967625-38967479 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 91

Conread position: 1-148
Cow position: chrX:39558373-39558518 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 68

Conread position: 1-148
Cow position: chrX:42994590-42994443 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 108, 65

Conread position: 1-148
Cow position: chrX:44063743-44063888 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 1-148
Cow position: chrX:46315400-46315552 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 1-148
Cow position: chrX:47756951-47757100 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 1-151
Cow position: chrX:4091625-4091473 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 106

Conread position: 1-151
Cow position: chrX:11717811-11717957 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 1-151
Cow position: chrX:16541694-16541852 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 1-151
Cow position: chrX:26440801-26440954 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 69

Conread position: 1-151
Cow position: chrX:27680372-27680227 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 34

Conread position: 2-141
Cow position: chrX:27228104-27227962 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 119
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 46, 135

Conread position: 2-145
Cow position: chrX:26285955-26285811 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 46, 22

Conread position: 2-146
Cow position: chrX:38549423-38549279 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 99, 52

Conread position: 2-148
Cow position: chrX:9635209-9635352 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 2-148
Cow position: chrX:30922162-30922010 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 2-148
Cow position: chrX:42874960-42874806 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 5-141
Cow position: chrX:23514042-23514179 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 43, 64

Conread position: 5-148
Cow position: chrX:33020458-33020314 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 7-146
Cow position: chrX:13868674-13868524 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 7-148
Cow position: chrX:12249773-12249635 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 39, 61

Conread position: 7-148
Cow position: chrX:18694953-18695091 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 61

Conread position: 7-148
Cow position: chrX:42247215-42247355 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 9-148
Cow position: chrX:40116390-40116250 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 14-150
Cow position: chrX:47300939-47301077 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 99, 0

Conread position: 17-100
Cow position: chrX:18111350-18111267 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 75
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 17-133
Cow position: chrX:21064243-21064128 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 17-147
Cow position: chrX:22921281-22921143 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 122

Conread position: 17-148
Cow position: chrX:1055433-1055561 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 90, 0

Conread position: 17-148
Cow position: chrX:16996463-16996335 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 86, 0

Conread position: 17-148
Cow position: chrX:47344255-47344123 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 92, 68

Conread position: 19-146
Cow position: chrX:37843682-37843551 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 19-148
Cow position: chrX:39938564-39938694 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 110
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 81, 47

Conread position: 20-147
Cow position: chrX:46722776-46722911 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 24-148
Cow position: chrX:29563420-29563542 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 24-148
Cow position: chrX:36975906-36975778 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 24-148
Cow position: chrX:37541079-37540953 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 83

Conread position: 29-150
Cow position: chrX:32978308-32978429 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 36

Conread position: 34-148
Cow position: chrX:21663255-21663137 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 127-739
Cow position: chrX:39701928-39702514 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 16

Conread position: 133-471
Cow position: chrX:40070536-40070210 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 43

Conread position: 137-423
Cow position: chrX:620193-619901 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 229

Conread position: 137-687
Cow position: chrX:28156610-28157151 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 37

Conread position: 137-823
Cow position: chrX:34553819-34554488 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 48

Conread position: 138-814
Cow position: chrX:6406425-6407095 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 149

Conread position: 142-796
Cow position: chrX:27590946-27590305 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 12

Conread position: 145-824
Cow position: chrX:33803915-33803257 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 200

Conread position: 146-655
Cow position: chrX:22579306-22578804 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 205

Conread position: 146-670
Cow position: chrX:21582524-21583043 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 205

Conread position: 146-825
Cow position: chrX:14782264-14781585 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 196

Conread position: 146-825
Cow position: chrX:23038903-23038237 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 164

Conread position: 150-481
Cow position: chrX:29700858-29700543 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 125

Conread position: 150-665
Cow position: chrX:31372547-31373058 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 170

Conread position: 152-482
Cow position: chrX:30681417-30681092 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 207

Conread position: 157-424
Cow position: chrX:33583786-33584048 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 58, 163

Conread position: 159-678
Cow position: chrX:30089952-30089444 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 176

Conread position: 165-676
Cow position: chrX:29722331-29722819 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 86

Conread position: 166-827
Cow position: chrX:17610354-17609695 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 219

Conread position: 171-427
Cow position: chrX:26447192-26447441 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 45, 62

Conread position: 176-667
Cow position: chrX:28879482-28879008 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 63

Conread position: 177-494
Cow position: chrX:7444018-7444331 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 175

Conread position: 186-691
Cow position: chrX:7177784-7178273 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 192

Conread position: 206-682
Cow position: chrX:22871261-22871732 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 147

Conread position: 213-825
Cow position: chrX:160579-161188 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 121

Conread position: 214-815
Cow position: chrX:25329163-25329761 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 48

Conread position: 239-495
Cow position: chrX:11613679-11613934 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 111

Conread position: 263-487
Cow position: chrX:27445879-27446092 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 184
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 118, 93

Conread position: 297-649
Cow position: chrX:10146435-10146087 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 52

Conread position: 301-817
Cow position: chrX:20976812-20976307 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 50

Conread position: 341-532
Cow position: chrX:39698276-39698466 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 44, 12

Conread position: 344-607
Cow position: chrX:45884106-45884370 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 202
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 32, 39

Conread position: 344-819
Cow position: chrX:22812338-22812816 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 16

Conread position: 347-827
Cow position: chrX:47380180-47379705 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 78

Conread position: 352-690
Cow position: chrX:25360848-25361182 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 72

Conread position: 357-573
Cow position: chrX:3154991-3154782 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 18

Conread position: 362-825
Cow position: chrX:32039545-32039083 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 24

Conread position: 369-825
Cow position: chrX:11674357-11674818 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 57

Conread position: 370-827
Cow position: chrX:17631529-17631068 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 53

Conread position: 379-825
Cow position: chrX:24317381-24317826 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 56

Show alignments to all cow chromosomes.