Cow genome map
| Conread name: | Lng1-LNG010018E09 |
| Conread position: | 6-370 |
| Cow position: | chr21:9209415-9209058 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 222, 26 |
| Conread position: | 6-370 |
| Cow position: | chr21:34181774-34181416 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 172, 26 |
| Conread position: | 7-370 |
| Cow position: | chr21:25738099-25738449 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 171, 25 |
| Conread position: | 15-367 |
| Cow position: | chr21:47978367-47978021 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:1752490-1752140 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:3924012-3923662 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 213, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:7525217-7524868 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:10757011-10756662 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:11143750-11144099 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:11292808-11292457 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:16575347-16575696 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:18574614-18574265 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:21624184-21623835 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:23329242-23329592 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 162, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:23341752-23341402 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:25598764-25598415 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:26756625-26756972 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:26854593-26854942 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:26875691-26875342 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 213, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:30655739-30655390 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:33107394-33107743 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:33709400-33709749 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-370 |
| Cow position: | chr21:41795624-41795974 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 15-395 |
| Cow position: | chr21:31950513-31950137 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 213, 17 |
| Conread position: | 31-227 |
| Cow position: | chr21:12314065-12313871 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 32-363 |
| Cow position: | chr21:46598771-46599102 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 36-361 |
| Cow position: | chr21:1058557-1058231 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 36-361 |
| Cow position: | chr21:3813714-3814037 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 196, 18 |
| Conread position: | 36-361 |
| Cow position: | chr21:4282111-4282433 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 197, 18 |
| Conread position: | 36-363 |
| Cow position: | chr21:11082868-11083196 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 36-367 |
| Cow position: | chr21:150229-149900 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 196, 18 |
| Conread position: | 36-367 |
| Cow position: | chr21:27607610-27607939 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 196, 18 |
| Conread position: | 36-370 |
| Cow position: | chr21:9363284-9363624 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 36-370 |
| Cow position: | chr21:10571353-10571021 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 142, 18 |
| Conread position: | 36-370 |
| Cow position: | chr21:28512294-28511963 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 196, 18 |
| Conread position: | 36-370 |
| Cow position: | chr21:39401353-39401015 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 42-362 |
| Cow position: | chr21:36701209-36701524 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 186, 12 |
| Conread position: | 48-401 |
| Cow position: | chr21:31706821-31706458 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 52-363 |
| Cow position: | chr21:45457468-45457153 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 127, 44 |
| Conread position: | 107-370 |
| Cow position: | chr21:5898720-5898988 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 73 |
| Conread position: | 108-370 |
| Cow position: | chr21:19050805-19051064 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 18 |
| Conread position: | 111-367 |
| Cow position: | chr21:3818795-3818534 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 14 |
| Conread position: | 111-367 |
| Cow position: | chr21:10854270-10854010 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 111-370 |
| Cow position: | chr21:5021152-5020889 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 113-364 |
| Cow position: | chr21:36956640-36956388 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 122, 10 |
| Conread position: | 115-370 |
| Cow position: | chr21:20262654-20262915 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 78, 10 |
| Conread position: | 116-359 |
| Cow position: | chr21:34658715-34658470 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 116-361 |
| Cow position: | chr21:10000610-10000852 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 116-364 |
| Cow position: | chr21:22856858-22856606 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 116, 9 |
| Conread position: | 116-367 |
| Cow position: | chr21:26744278-26744533 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 116-370 |
| Cow position: | chr21:28768757-28769014 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 116-370 |
| Cow position: | chr21:32358886-32359140 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 116-370 |
| Cow position: | chr21:42558783-42558525 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 117-370 |
| Cow position: | chr21:5238084-5237829 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 115, 8 |
| Conread position: | 121-370 |
| Cow position: | chr21:451881-451631 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 122-370 |
| Cow position: | chr21:21103723-21103469 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 6, 45 |
| Conread position: | 122-370 |
| Cow position: | chr21:26628772-26628518 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 6, 45 |
| Conread position: | 122-370 |
| Cow position: | chr21:30965937-30966192 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 182 |
| Conread position: | 122-370 |
| Cow position: | chr21:31039830-31040084 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 40 |
| Conread position: | 134-361 |
| Cow position: | chr21:725226-725458 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 60 |
| Conread position: | 134-367 |
| Cow position: | chr21:19626718-19626956 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 134-370 |
| Cow position: | chr21:48135-47894 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 134-370 |
| Cow position: | chr21:3496515-3496755 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 98, 28 |
| Conread position: | 134-370 |
| Cow position: | chr21:3585911-3586149 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 35 |
| Conread position: | 134-370 |
| Cow position: | chr21:4718828-4719069 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 134-370 |
| Cow position: | chr21:5595326-5595087 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 134-370 |
| Cow position: | chr21:5641846-5642086 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 134-370 |
| Cow position: | chr21:7597279-7597520 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 134-370 |
| Cow position: | chr21:10075272-10075513 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 134-370 |
| Cow position: | chr21:13735170-13735411 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 134-370 |
| Cow position: | chr21:18289326-18289085 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 101, 51 |
| Conread position: | 134-370 |
| Cow position: | chr21:30571088-30571329 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 134-370 |
| Cow position: | chr21:33770669-33770428 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 134-370 |
| Cow position: | chr21:36892240-36892481 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 134-370 |
| Cow position: | chr21:39429610-39429371 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 134-370 |
| Cow position: | chr21:39469773-39470014 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 134-370 |
| Cow position: | chr21:40479253-40479012 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 134-372 |
| Cow position: | chr21:38450020-38450263 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 95, 60 |
| Conread position: | 134-386 |
| Cow position: | chr21:44657980-44657726 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 103, 53 |
| Conread position: | 136-370 |
| Cow position: | chr21:2514834-2514598 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 136-370 |
| Cow position: | chr21:22719114-22719351 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 102, 43 |
| Conread position: | 137-367 |
| Cow position: | chr21:29855333-29855098 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 100, 48 |
| Conread position: | 141-367 |
| Cow position: | chr21:19614229-19613998 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 180-370 |
| Cow position: | chr21:47168908-47168711 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.