Cow genome map
| Conread name: | Lng1-LNG010021B07 |
| Conread position: | 263-707 |
| Cow position: | chr11:24392488-24392940 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-719 |
| Cow position: | chr11:28055432-28054968 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 263-731 |
| Cow position: | chr11:19103325-19102847 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-731 |
| Cow position: | chr11:23876465-23876944 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-731 |
| Cow position: | chr11:72110798-72110321 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-754 |
| Cow position: | chr11:37093901-37093402 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 268-719 |
| Cow position: | chr11:41171516-41171065 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 270-537 |
| Cow position: | chr11:38006146-38005874 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 267 |
| Conread position: | 280-616 |
| Cow position: | chr11:24242629-24242966 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 188 |
| Conread position: | 281-505 |
| Cow position: | chr11:72005231-72005453 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 60 |
| Conread position: | 281-570 |
| Cow position: | chr11:48084523-48084799 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 281-689 |
| Cow position: | chr11:12092939-12093342 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 284 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 281-715 |
| Cow position: | chr11:76375284-76374856 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 281-725 |
| Cow position: | chr11:29234443-29234013 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 281-731 |
| Cow position: | chr11:26125745-26125293 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 281-731 |
| Cow position: | chr11:38836234-38835777 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 282-574 |
| Cow position: | chr11:81853405-81853113 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 198 |
| Conread position: | 282-620 |
| Cow position: | chr11:17925377-17925042 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 283-734 |
| Cow position: | chr11:8243889-8244348 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 302 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 284-524 |
| Cow position: | chr11:3237739-3237974 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 284-546 |
| Cow position: | chr11:25180275-25180534 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 284-581 |
| Cow position: | chr11:53432583-53432284 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 36, 20 |
| Conread position: | 284-593 |
| Cow position: | chr11:24677248-24677554 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 284-606 |
| Cow position: | chr11:72017411-72017735 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 28, 217 |
| Conread position: | 284-644 |
| Cow position: | chr11:21440816-21441160 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 284-654 |
| Cow position: | chr11:65162341-65161978 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 284-719 |
| Cow position: | chr11:10846637-10847072 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 20 |
| Conread position: | 284-719 |
| Cow position: | chr11:33044932-33044493 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 284-719 |
| Cow position: | chr11:43731620-43732038 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 284-725 |
| Cow position: | chr11:42428523-42428970 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 284-727 |
| Cow position: | chr11:87127040-87127481 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 284-731 |
| Cow position: | chr11:12359233-12358782 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 284-731 |
| Cow position: | chr11:29669440-29668989 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 284-731 |
| Cow position: | chr11:49076470-49076047 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 285-719 |
| Cow position: | chr11:44496397-44495970 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 285-731 |
| Cow position: | chr11:9660194-9659760 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 295 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 373, 23 |
| Conread position: | 286-719 |
| Cow position: | chr11:11126115-11126542 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 132 |
| Conread position: | 288-592 |
| Cow position: | chr11:44507376-44507665 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 305-559 |
| Cow position: | chr11:27283191-27283450 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 308-731 |
| Cow position: | chr11:63660372-63659942 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 232 |
| Conread position: | 312-719 |
| Cow position: | chr11:28062913-28063318 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 324-716 |
| Cow position: | chr11:52418622-52419012 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 157 |
| Conread position: | 324-731 |
| Cow position: | chr11:19065027-19064610 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 194 |
| Conread position: | 324-731 |
| Cow position: | chr11:20921517-20921106 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 329-725 |
| Cow position: | chr11:19220524-19220132 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 258, 5 |
| Conread position: | 330-731 |
| Cow position: | chr11:44157994-44157596 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 336-700 |
| Cow position: | chr11:4028308-4027942 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 47, 169 |
| Conread position: | 336-704 |
| Cow position: | chr11:43515390-43515018 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 178 |
| Conread position: | 336-716 |
| Cow position: | chr11:8262449-8262075 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 18 |
| Conread position: | 336-716 |
| Cow position: | chr11:10218310-10217937 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 245, 174 |
| Conread position: | 336-719 |
| Cow position: | chr11:58133601-58133997 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 154, 268 |
| Conread position: | 336-731 |
| Cow position: | chr11:7687158-7687558 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 336-731 |
| Cow position: | chr11:67449738-67450137 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 199, 144 |
| Conread position: | 340-632 |
| Cow position: | chr11:52462343-52462636 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 255, 170 |
| Conread position: | 341-719 |
| Cow position: | chr11:54208875-54209246 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 317, 169 |
| Conread position: | 341-731 |
| Cow position: | chr11:3492263-3492650 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 53, 152 |
| Conread position: | 341-731 |
| Cow position: | chr11:28230494-28230109 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 315, 139 |
| Conread position: | 341-731 |
| Cow position: | chr11:36744929-36744541 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 341-731 |
| Cow position: | chr11:37477867-37477480 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 341-731 |
| Cow position: | chr11:67847317-67846929 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 14 |
| Conread position: | 342-731 |
| Cow position: | chr11:17108437-17108046 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 350-719 |
| Cow position: | chr11:15998150-15998522 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 351-719 |
| Cow position: | chr11:9158155-9157798 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 310, 11 |
| Conread position: | 353-725 |
| Cow position: | chr11:77729266-77728894 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 296, 157 |
| Conread position: | 355-647 |
| Cow position: | chr11:9220751-9220466 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 126, 7 |
| Conread position: | 359-731 |
| Cow position: | chr11:8887884-8887513 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 151 |
| Conread position: | 372-654 |
| Cow position: | chr11:33195333-33195061 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 372-700 |
| Cow position: | chr11:40777452-40777122 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 182, 57 |
| Conread position: | 372-731 |
| Cow position: | chr11:32071391-32071749 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 77, 111 |
| Conread position: | 373-719 |
| Cow position: | chr11:37492364-37492021 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 286, 137 |
| Conread position: | 383-719 |
| Cow position: | chr11:31414945-31414609 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 79 |
| Conread position: | 384-719 |
| Cow position: | chr11:25526868-25527200 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 97, 115 |
| Conread position: | 391-719 |
| Cow position: | chr11:21466381-21466704 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 268, 114 |
| Conread position: | 394-694 |
| Cow position: | chr11:7073162-7072870 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 111, 51 |
| Conread position: | 394-719 |
| Cow position: | chr11:44861226-44860897 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 118 |
| Conread position: | 403-664 |
| Cow position: | chr11:17220895-17220640 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 206, 75 |
| Conread position: | 514-716 |
| Cow position: | chr11:30304667-30304866 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 49 |
Show alignments to all cow chromosomes.