Cow genome map
| Conread name: | Lng1-LNG010021B07 |
| Conread position: | 259-731 |
| Cow position: | chr17:13929011-13929481 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 10 |
| Conread position: | 262-731 |
| Cow position: | chr17:11088379-11087911 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 263-612 |
| Cow position: | chr17:6259042-6259391 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-731 |
| Cow position: | chr17:19270012-19269553 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 263-731 |
| Cow position: | chr17:40803727-40804210 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 328 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 267-706 |
| Cow position: | chr17:15370431-15370865 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 289 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 90, 66 |
| Conread position: | 272-684 |
| Cow position: | chr17:2587672-2588091 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 284-450 |
| Cow position: | chr17:42263919-42264084 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 54, 134 |
| Conread position: | 284-577 |
| Cow position: | chr17:18302405-18302119 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 75 |
| Conread position: | 284-584 |
| Cow position: | chr17:12670976-12670677 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 209 |
| Conread position: | 284-601 |
| Cow position: | chr17:31200712-31200387 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 20, 255 |
| Conread position: | 284-682 |
| Cow position: | chr17:20401032-20401447 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 284-693 |
| Cow position: | chr17:4081003-4081424 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 264 |
| Conread position: | 284-731 |
| Cow position: | chr17:2578924-2579371 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 284-731 |
| Cow position: | chr17:18104321-18103867 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 285-715 |
| Cow position: | chr17:2286749-2287185 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 316, 44 |
| Conread position: | 285-731 |
| Cow position: | chr17:2146582-2147015 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 96 |
| Conread position: | 288-452 |
| Cow position: | chr17:1659484-1659318 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 302-731 |
| Cow position: | chr17:1383435-1383001 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 316-502 |
| Cow position: | chr17:3710802-3710615 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 323-731 |
| Cow position: | chr17:43987921-43988348 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 15, 232 |
| Conread position: | 324-731 |
| Cow position: | chr17:15157549-15157150 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 330-731 |
| Cow position: | chr17:25737073-25737476 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 181 |
| Conread position: | 335-693 |
| Cow position: | chr17:14326083-14325719 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 180 |
| Conread position: | 336-691 |
| Cow position: | chr17:153035-152696 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 336-731 |
| Cow position: | chr17:15322247-15322626 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 323, 174 |
| Conread position: | 341-713 |
| Cow position: | chr17:249350-249710 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 307, 140 |
| Conread position: | 341-713 |
| Cow position: | chr17:2261538-2261905 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 138 |
| Conread position: | 341-729 |
| Cow position: | chr17:2249158-2248770 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 341-731 |
| Cow position: | chr17:8208531-8208920 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 164 |
| Conread position: | 341-731 |
| Cow position: | chr17:14217604-14217211 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 170 |
| Conread position: | 341-731 |
| Cow position: | chr17:22160337-22160729 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 341-731 |
| Cow position: | chr17:24633378-24633767 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 341-731 |
| Cow position: | chr17:24780473-24780861 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 28 |
| Conread position: | 344-596 |
| Cow position: | chr17:55255-55009 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 22 |
| Conread position: | 344-612 |
| Cow position: | chr17:22131366-22131631 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 359-647 |
| Cow position: | chr17:32024754-32024472 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 359-684 |
| Cow position: | chr17:1284317-1283997 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 100 |
| Conread position: | 362-608 |
| Cow position: | chr17:19609457-19609211 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 37, 144 |
| Conread position: | 372-731 |
| Cow position: | chr17:20666274-20665913 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 245, 138 |
| Conread position: | 374-731 |
| Cow position: | chr17:39933142-39933495 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 146 |
| Conread position: | 384-716 |
| Cow position: | chr17:27345272-27345603 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 273, 126 |
| Conread position: | 384-719 |
| Cow position: | chr17:16889595-16889924 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 275, 63 |
| Conread position: | 389-731 |
| Cow position: | chr17:13857305-13856956 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 127 |
| Conread position: | 390-731 |
| Cow position: | chr17:6089691-6089348 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 227, 120 |
| Conread position: | 434-719 |
| Cow position: | chr17:2737895-2738179 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 538-719 |
| Cow position: | chr17:3710444-3710263 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 121, 54 |
Show alignments to all cow chromosomes.