Cow genome map

Conread name: Lng1-LNG010021B07

Conread position: 259-719
Cow position: chr2:42672380-42671932 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 32

Conread position: 260-711
Cow position: chr2:40452512-40452971 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 317
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 6, 109

Conread position: 263-480
Cow position: chr2:26655279-26655049 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 263-642
Cow position: chr2:2363153-2363527 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 265
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 19, 79

Conread position: 263-716
Cow position: chr2:13046689-13046237 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 263-719
Cow position: chr2:5481634-5481186 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 310
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 19, 77

Conread position: 263-719
Cow position: chr2:10187233-10186778 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 298
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 19, 45

Conread position: 263-719
Cow position: chr2:52061662-52062122 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 263-719
Cow position: chr2:65939450-65938992 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 53

Conread position: 263-731
Cow position: chr2:53328740-53329216 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 263-731
Cow position: chr2:81255798-81256285 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 326
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 19, 38

Conread position: 270-716
Cow position: chr2:11724845-11725299 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 291
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 59, 38

Conread position: 276-462
Cow position: chr2:3439080-3439261 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 68

Conread position: 280-731
Cow position: chr2:11160111-11159659 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 123

Conread position: 283-706
Cow position: chr2:36990913-36991333 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 286
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 23, 82

Conread position: 284-501
Cow position: chr2:7210445-7210666 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 50, 0

Conread position: 284-509
Cow position: chr2:30388261-30388484 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 26, 44

Conread position: 284-597
Cow position: chr2:36979116-36979432 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 223
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 42, 29

Conread position: 284-716
Cow position: chr2:42334252-42333813 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 89

Conread position: 284-719
Cow position: chr2:3729760-3730185 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 176

Conread position: 284-719
Cow position: chr2:24921360-24921801 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 29

Conread position: 284-719
Cow position: chr2:75676849-75676425 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 185

Conread position: 284-731
Cow position: chr2:976251-975810 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 24

Conread position: 284-731
Cow position: chr2:8117254-8117718 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 14

Conread position: 284-731
Cow position: chr2:16899259-16899714 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 43

Conread position: 284-731
Cow position: chr2:19009248-19009701 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 20

Conread position: 284-731
Cow position: chr2:28651211-28650759 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 20

Conread position: 284-731
Cow position: chr2:63293553-63293106 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 136

Conread position: 285-581
Cow position: chr2:28792073-28792368 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 198
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 41, 19

Conread position: 285-719
Cow position: chr2:32458999-32458552 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 49

Conread position: 285-719
Cow position: chr2:38589201-38589626 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 39

Conread position: 285-719
Cow position: chr2:72922806-72922376 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 285
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 375, 41

Conread position: 285-720
Cow position: chr2:75250802-75251211 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 302
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 53, 19

Conread position: 285-731
Cow position: chr2:6877516-6877958 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 75

Conread position: 285-731
Cow position: chr2:24145295-24145743 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 19

Conread position: 285-731
Cow position: chr2:50984210-50983761 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 19

Conread position: 299-716
Cow position: chr2:5519962-5519535 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 285
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 17, 73

Conread position: 303-719
Cow position: chr2:20904081-20903682 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 68

Conread position: 303-731
Cow position: chr2:769348-768926 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 208

Conread position: 305-719
Cow position: chr2:43958673-43959072 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 285
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 26, 56

Conread position: 305-731
Cow position: chr2:3748953-3749374 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 125

Conread position: 306-731
Cow position: chr2:5871283-5870866 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 27

Conread position: 312-477
Cow position: chr2:20875049-20874881 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 315-719
Cow position: chr2:10733775-10733382 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 270
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 10, 96

Conread position: 319-731
Cow position: chr2:54649737-54649334 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 47

Conread position: 324-700
Cow position: chr2:78741209-78741567 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 261
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 340, 75

Conread position: 324-731
Cow position: chr2:41656145-41656550 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 274
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 14, 85

Conread position: 324-731
Cow position: chr2:44090363-44090767 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 277
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 14, 157

Conread position: 324-731
Cow position: chr2:52615528-52615939 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 188

Conread position: 325-719
Cow position: chr2:51305835-51305452 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 8

Conread position: 328-632
Cow position: chr2:73190903-73191201 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 50, 22

Conread position: 333-731
Cow position: chr2:32388634-32389031 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 77

Conread position: 336-505
Cow position: chr2:74392294-74392125 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 336-647
Cow position: chr2:22076869-22077167 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 41, 25

Conread position: 336-715
Cow position: chr2:32654426-32654799 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 35

Conread position: 336-719
Cow position: chr2:10269586-10269205 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 174

Conread position: 336-731
Cow position: chr2:47039333-47038945 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 253
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 320, 153

Conread position: 336-731
Cow position: chr2:47810096-47810478 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 270
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 323, 7

Conread position: 336-731
Cow position: chr2:78761563-78761943 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 271
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 323, 20

Conread position: 337-731
Cow position: chr2:202579-202185 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 151

Conread position: 337-731
Cow position: chr2:15580915-15580518 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 259
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 169, 232

Conread position: 338-731
Cow position: chr2:44935992-44935617 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 267
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 311, 121

Conread position: 340-731
Cow position: chr2:2380203-2380593 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 170

Conread position: 341-691
Cow position: chr2:47604718-47604374 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 242
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 318, 160

Conread position: 341-705
Cow position: chr2:6959826-6960187 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 71

Conread position: 341-714
Cow position: chr2:27816852-27817227 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 252
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 278, 173

Conread position: 341-716
Cow position: chr2:3325491-3325112 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 257
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 32, 25

Conread position: 341-730
Cow position: chr2:57334282-57334667 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 268
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 276, 30

Conread position: 341-731
Cow position: chr2:25031387-25031008 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 269
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 276, 27

Conread position: 341-731
Cow position: chr2:26920773-26921164 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 259
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 276, 37

Conread position: 341-731
Cow position: chr2:57142611-57142219 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 267
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 32, 25

Conread position: 341-731
Cow position: chr2:80956565-80956169 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 258
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 32, 25

Conread position: 342-691
Cow position: chr2:782648-782309 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 240
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 307, 51

Conread position: 342-731
Cow position: chr2:213146-212751 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 262
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 258, 13

Conread position: 342-731
Cow position: chr2:44345790-44346183 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 259
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 26, 174

Conread position: 342-731
Cow position: chr2:45214179-45213788 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 163

Conread position: 344-704
Cow position: chr2:54736709-54737064 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 248
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 312, 135

Conread position: 344-731
Cow position: chr2:1673569-1673190 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 253
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 9, 181

Conread position: 344-731
Cow position: chr2:12225071-12224679 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 265
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 9, 136

Conread position: 345-719
Cow position: chr2:14560280-14560655 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 224
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 90, 122

Conread position: 350-725
Cow position: chr2:20921681-20921321 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 259
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 308, 43

Conread position: 351-535
Cow position: chr2:6879266-6879448 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 153, 0

Conread position: 351-731
Cow position: chr2:283607-283225 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 159

Conread position: 354-599
Cow position: chr2:28644297-28644052 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 81, 28

Conread position: 355-719
Cow position: chr2:16288345-16288702 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 155

Conread position: 355-719
Cow position: chr2:44992189-44991824 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 294, 34

Conread position: 359-719
Cow position: chr2:422164-422526 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 238
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 300, 45

Conread position: 367-630
Cow position: chr2:15578550-15578294 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 239, 40

Conread position: 373-731
Cow position: chr2:50076707-50077068 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 243
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 13, 142

Conread position: 384-719
Cow position: chr2:1491306-1490972 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 231
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 63, 119

Conread position: 384-719
Cow position: chr2:85356648-85356314 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 126

Conread position: 431-725
Cow position: chr2:38372014-38372309 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 174, 73

Conread position: 434-719
Cow position: chr2:6772993-6772716 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 80, 0

Conread position: 439-725
Cow position: chr2:67430247-67430510 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 280, 52

Conread position: 448-712
Cow position: chr2:3439572-3439838 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 184
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 39

Conread position: 515-719
Cow position: chr2:10712182-10711974 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 40, 22

Conread position: 544-719
Cow position: chr2:46465934-46465755 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 114, 29

Conread position: 546-731
Cow position: chr2:7210983-7211172 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 112, 57

Show alignments to all cow chromosomes.