Cow genome map
| Conread name: | Lng1-LNG010021B07 |
| Conread position: | 256-731 |
| Cow position: | chr29:40503526-40503040 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 260-719 |
| Cow position: | chr29:2841905-2841442 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 263-620 |
| Cow position: | chr29:45587838-45587475 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-704 |
| Cow position: | chr29:23975293-23975748 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 216 |
| Conread position: | 263-719 |
| Cow position: | chr29:49016-48551 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 263-719 |
| Cow position: | chr29:2099306-2099771 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 263-719 |
| Cow position: | chr29:7431756-7431289 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-719 |
| Cow position: | chr29:21543896-21543438 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 311 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 263-731 |
| Cow position: | chr29:10648782-10648313 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 263-731 |
| Cow position: | chr29:25933084-25932606 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 263-731 |
| Cow position: | chr29:26165358-26164884 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-731 |
| Cow position: | chr29:32539271-32539749 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-731 |
| Cow position: | chr29:34800329-34799871 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 311 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 263-731 |
| Cow position: | chr29:39080246-39079767 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 281-706 |
| Cow position: | chr29:4635479-4635053 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 95 |
| Conread position: | 281-724 |
| Cow position: | chr29:38226477-38226933 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 282-731 |
| Cow position: | chr29:14012972-14013410 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 31, 51 |
| Conread position: | 282-731 |
| Cow position: | chr29:14073441-14073001 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 307 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 31, 51 |
| Conread position: | 284-480 |
| Cow position: | chr29:131080-131280 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 284-580 |
| Cow position: | chr29:34752193-34751910 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 284-654 |
| Cow position: | chr29:32890698-32891068 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 284-706 |
| Cow position: | chr29:803846-803412 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 284-715 |
| Cow position: | chr29:104068-104496 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 284-716 |
| Cow position: | chr29:19652593-19653032 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 284-731 |
| Cow position: | chr29:10824471-10824017 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 304 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 284-731 |
| Cow position: | chr29:11841198-11841602 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 44 |
| Conread position: | 284-731 |
| Cow position: | chr29:15950691-15950245 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 50 |
| Conread position: | 284-731 |
| Cow position: | chr29:19623759-19623309 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 284-731 |
| Cow position: | chr29:20250644-20251098 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 284-731 |
| Cow position: | chr29:21246057-21246508 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 285-716 |
| Cow position: | chr29:10848609-10848185 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 266, 23 |
| Conread position: | 285-719 |
| Cow position: | chr29:11048777-11049209 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 295 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 305-719 |
| Cow position: | chr29:5957115-5957529 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 273 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 324-704 |
| Cow position: | chr29:16109256-16109640 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 14, 214 |
| Conread position: | 336-731 |
| Cow position: | chr29:43322101-43322498 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 336-732 |
| Cow position: | chr29:30811093-30811471 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 142 |
| Conread position: | 337-608 |
| Cow position: | chr29:14368489-14368758 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 337-731 |
| Cow position: | chr29:15895303-15894912 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 341-509 |
| Cow position: | chr29:21431795-21431627 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 164 |
| Conread position: | 341-716 |
| Cow position: | chr29:611066-610689 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 137, 171 |
| Conread position: | 341-716 |
| Cow position: | chr29:13577974-13578342 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 293, 139 |
| Conread position: | 341-716 |
| Cow position: | chr29:32315589-32315964 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 315, 152 |
| Conread position: | 341-731 |
| Cow position: | chr29:15969594-15969212 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 341-731 |
| Cow position: | chr29:27250786-27250396 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 344-664 |
| Cow position: | chr29:9644171-9643857 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 350-731 |
| Cow position: | chr29:31121364-31121744 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 355-693 |
| Cow position: | chr29:43366429-43366096 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 304, 18 |
| Conread position: | 357-714 |
| Cow position: | chr29:2750819-2750472 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 307, 89 |
| Conread position: | 384-719 |
| Cow position: | chr29:16769726-16770055 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 116 |
| Conread position: | 384-719 |
| Cow position: | chr29:27041170-27040837 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 275, 126 |
| Conread position: | 386-716 |
| Cow position: | chr29:8063315-8062983 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 125, 42 |
| Conread position: | 406-731 |
| Cow position: | chr29:2689518-2689840 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 249, 74 |
| Conread position: | 473-725 |
| Cow position: | chr29:21427378-21427122 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 497-733 |
| Cow position: | chr29:34609242-34609011 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 162, 17 |
| Conread position: | 537-719 |
| Cow position: | chr29:17662661-17662850 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 0 |
Show alignments to all cow chromosomes.