Cow genome map

Conread name: Lng1-LNG010021B07

Conread position: 257-723
Cow position: chr3:60387752-60388231 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 309
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 51, 134

Conread position: 259-719
Cow position: chr3:36882536-36882074 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 41

Conread position: 262-719
Cow position: chr3:65584218-65583772 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 73

Conread position: 263-520
Cow position: chr3:53515112-53515374 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 39

Conread position: 263-715
Cow position: chr3:38865785-38866239 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 312
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 257

Conread position: 263-719
Cow position: chr3:593977-594423 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 312
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 9, 46

Conread position: 263-719
Cow position: chr3:2633318-2633771 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 302
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 22, 77

Conread position: 263-719
Cow position: chr3:6684836-6685305 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 49

Conread position: 263-719
Cow position: chr3:43040312-43039848 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 49

Conread position: 263-730
Cow position: chr3:57485344-57484872 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 263-731
Cow position: chr3:2711578-2711104 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 263-731
Cow position: chr3:69932779-69933250 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 45

Conread position: 266-719
Cow position: chr3:17936678-17936220 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 315
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 58, 22

Conread position: 270-731
Cow position: chr3:56650877-56650412 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 36

Conread position: 271-731
Cow position: chr3:45775671-45775218 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 68

Conread position: 272-719
Cow position: chr3:49545777-49545333 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 304
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 32, 54

Conread position: 282-621
Cow position: chr3:83700730-83700408 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 51

Conread position: 282-716
Cow position: chr3:19692686-19692253 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 90

Conread position: 284-557
Cow position: chr3:54782963-54783244 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 194
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 152

Conread position: 284-642
Cow position: chr3:30929082-30929453 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 209

Conread position: 284-647
Cow position: chr3:19801822-19802191 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 152

Conread position: 284-648
Cow position: chr3:30313963-30314325 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 20

Conread position: 284-678
Cow position: chr3:49309259-49308880 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 277
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 50, 43

Conread position: 284-700
Cow position: chr3:24592206-24591801 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 50

Conread position: 284-705
Cow position: chr3:50208766-50209192 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 297
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 30, 222

Conread position: 284-716
Cow position: chr3:15177720-15178152 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 102

Conread position: 284-716
Cow position: chr3:21946001-21945565 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 59

Conread position: 284-719
Cow position: chr3:53410342-53410761 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 304
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 26, 91

Conread position: 284-719
Cow position: chr3:72629475-72629913 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 38

Conread position: 284-725
Cow position: chr3:18357468-18357035 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 98

Conread position: 284-731
Cow position: chr3:5882943-5883397 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 20

Conread position: 284-731
Cow position: chr3:42630403-42630871 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 81

Conread position: 284-731
Cow position: chr3:47273562-47273124 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 39

Conread position: 284-731
Cow position: chr3:48061419-48060974 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 29

Conread position: 284-731
Cow position: chr3:58208682-58208234 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 49

Conread position: 284-731
Cow position: chr3:78028008-78027554 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 29

Conread position: 285-716
Cow position: chr3:36099309-36098863 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 218

Conread position: 294-517
Cow position: chr3:80871159-80871375 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 297-719
Cow position: chr3:42431657-42432075 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 284
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 37, 77

Conread position: 302-731
Cow position: chr3:32623583-32623166 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 284
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 151

Conread position: 303-684
Cow position: chr3:34093969-34093613 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 265
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 88

Conread position: 303-716
Cow position: chr3:49140979-49140570 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 82

Conread position: 304-664
Cow position: chr3:56340995-56340639 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 241
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 30, 204

Conread position: 324-719
Cow position: chr3:19938359-19938758 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 188

Conread position: 324-731
Cow position: chr3:2916915-2917317 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 273
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 14, 44

Conread position: 324-731
Cow position: chr3:37968530-37968935 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 278
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 14, 188

Conread position: 324-731
Cow position: chr3:64028637-64028229 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 188

Conread position: 325-719
Cow position: chr3:57500063-57499674 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 99

Conread position: 325-731
Cow position: chr3:4285335-4285742 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 279
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 13, 50

Conread position: 326-695
Cow position: chr3:2909622-2909273 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 265
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 333, 13

Conread position: 333-731
Cow position: chr3:6781847-6782244 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 177

Conread position: 335-706
Cow position: chr3:83295780-83295420 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 252
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 313, 20

Conread position: 336-528
Cow position: chr3:18464287-18464099 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 132
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 336-719
Cow position: chr3:32842961-32842586 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 274
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 237, 19

Conread position: 336-731
Cow position: chr3:3979857-3980246 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 274
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 323, 45

Conread position: 336-731
Cow position: chr3:21183218-21182828 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 35

Conread position: 336-731
Cow position: chr3:40822848-40823243 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 265
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 323, 174

Conread position: 336-731
Cow position: chr3:59860825-59861222 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 174

Conread position: 336-731
Cow position: chr3:64650084-64650488 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 275
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 24, 181

Conread position: 336-734
Cow position: chr3:23291944-23291548 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 31

Conread position: 338-719
Cow position: chr3:64358698-64358321 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 119

Conread position: 339-609
Cow position: chr3:5996404-5996142 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 171, 0

Conread position: 341-571
Cow position: chr3:24359726-24359953 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 150
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 169, 0

Conread position: 341-654
Cow position: chr3:14440262-14439954 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 211
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 150, 0

Conread position: 341-716
Cow position: chr3:49677227-49677600 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 254
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 318, 169

Conread position: 341-729
Cow position: chr3:57856201-57856591 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 25

Conread position: 341-731
Cow position: chr3:15989563-15989179 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 270
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 32, 25

Conread position: 341-731
Cow position: chr3:22335364-22335749 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 261
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 276, 19

Conread position: 341-731
Cow position: chr3:66891489-66891105 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 261
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 315, 138

Conread position: 341-731
Cow position: chr3:72704662-72705054 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 263
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 32, 25

Conread position: 341-838
Cow position: chr3:40340497-40340000 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 297
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 149, 170

Conread position: 342-503
Cow position: chr3:75041679-75041517 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 151, 0

Conread position: 342-691
Cow position: chr3:3054088-3054419 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 241
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 16, 0

Conread position: 342-729
Cow position: chr3:52865279-52864895 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 151

Conread position: 342-731
Cow position: chr3:18542944-18542551 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 170

Conread position: 342-731
Cow position: chr3:64017896-64017509 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 28

Conread position: 344-719
Cow position: chr3:16072638-16072996 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 262
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 61, 40

Conread position: 344-719
Cow position: chr3:36126871-36127235 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 90

Conread position: 345-731
Cow position: chr3:46861830-46861447 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 261
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 149, 166

Conread position: 351-725
Cow position: chr3:60210690-60210325 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 112

Conread position: 352-661
Cow position: chr3:13513725-13513424 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 198
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 141, 153

Conread position: 353-731
Cow position: chr3:39326167-39326544 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 258
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 16, 158

Conread position: 354-716
Cow position: chr3:48231493-48231153 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 234
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 354-731
Cow position: chr3:63005663-63005292 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 8

Conread position: 359-731
Cow position: chr3:207677-207306 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 151

Conread position: 363-731
Cow position: chr3:36691702-36691336 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 130, 13

Conread position: 367-719
Cow position: chr3:5047693-5047340 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 137

Conread position: 382-731
Cow position: chr3:56320818-56321173 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 237
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 212, 111

Conread position: 384-719
Cow position: chr3:9716319-9716658 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 236
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 250, 130

Conread position: 384-719
Cow position: chr3:42580457-42580121 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 137

Conread position: 384-719
Cow position: chr3:77474272-77474604 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 238
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 282, 56

Conread position: 389-693
Cow position: chr3:2653634-2653926 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 269, 78

Conread position: 391-726
Cow position: chr3:66119170-66119506 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 120, 51

Conread position: 394-719
Cow position: chr3:19757442-19757115 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 270, 116

Conread position: 398-731
Cow position: chr3:47179682-47179347 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 231
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 157, 112

Conread position: 401-635
Cow position: chr3:66618715-66618939 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 402-719
Cow position: chr3:14588214-14588528 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 82

Conread position: 406-727
Cow position: chr3:54865151-54864843 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 241
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 246, 29

Conread position: 428-716
Cow position: chr3:3932317-3932593 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 231, 67

Conread position: 537-731
Cow position: chr3:66638397-66638596 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 122, 0

Show alignments to all cow chromosomes.