Cow genome map

Conread name: Lng1-LNG010021B07

Conread position: 255-610
Cow position: chr5:54619751-54620097 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 260
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 89

Conread position: 259-611
Cow position: chr5:41963657-41963303 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 244
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 23, 85

Conread position: 259-731
Cow position: chr5:10918077-10918553 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 49

Conread position: 260-731
Cow position: chr5:32945156-32945630 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 63

Conread position: 263-667
Cow position: chr5:68472275-68471875 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 256
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 58, 27

Conread position: 263-704
Cow position: chr5:49119999-49119553 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 263-731
Cow position: chr5:416443-415967 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 315
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 19, 45

Conread position: 263-731
Cow position: chr5:1342518-1342038 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 64

Conread position: 263-731
Cow position: chr5:2430855-2430377 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 54

Conread position: 263-731
Cow position: chr5:2913728-2914206 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 263-731
Cow position: chr5:3785088-3785559 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 256

Conread position: 263-731
Cow position: chr5:6158915-6158439 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 39

Conread position: 263-731
Cow position: chr5:7273144-7273607 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 255

Conread position: 263-731
Cow position: chr5:24097927-24098404 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 263-731
Cow position: chr5:34695863-34696340 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 263-731
Cow position: chr5:37731622-37732101 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 68

Conread position: 263-731
Cow position: chr5:55627282-55627747 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 64

Conread position: 264-731
Cow position: chr5:3963761-3964226 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 312
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 52, 40

Conread position: 269-731
Cow position: chr5:45182811-45182354 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 321
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 25, 99

Conread position: 272-611
Cow position: chr5:23756283-23755950 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 241
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 5, 72

Conread position: 281-715
Cow position: chr5:30088408-30087982 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 171

Conread position: 284-449
Cow position: chr5:7503088-7502913 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 284-507
Cow position: chr5:24151379-24151609 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 132

Conread position: 284-508
Cow position: chr5:60900003-60900240 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 284-545
Cow position: chr5:26070535-26070294 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 27, 0

Conread position: 284-627
Cow position: chr5:25001611-25001275 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 65

Conread position: 284-664
Cow position: chr5:46631109-46630741 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 50

Conread position: 284-672
Cow position: chr5:59282064-59282453 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 229

Conread position: 284-685
Cow position: chr5:26095047-26095433 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 232

Conread position: 284-700
Cow position: chr5:12682201-12681793 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 285
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 24, 230

Conread position: 284-702
Cow position: chr5:27488327-27488746 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 211

Conread position: 284-704
Cow position: chr5:27000506-27000909 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 302
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 20, 108

Conread position: 284-705
Cow position: chr5:29454541-29454136 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 280
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 27, 44

Conread position: 284-719
Cow position: chr5:48809407-48808972 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 80

Conread position: 284-731
Cow position: chr5:3504940-3504491 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 29

Conread position: 284-731
Cow position: chr5:14347066-14346622 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 291
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 27, 57

Conread position: 285-684
Cow position: chr5:34167367-34167768 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 299
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 20, 204

Conread position: 286-719
Cow position: chr5:51772040-51771602 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 299
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 20, 210

Conread position: 287-716
Cow position: chr5:26769127-26769551 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 286
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 49

Conread position: 294-716
Cow position: chr5:57366686-57366281 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 287
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 110

Conread position: 305-719
Cow position: chr5:56858376-56857952 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 190

Conread position: 305-731
Cow position: chr5:46663331-46663754 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 279
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 13, 20

Conread position: 308-706
Cow position: chr5:41359405-41358998 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 265
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 34, 25

Conread position: 313-719
Cow position: chr5:49100977-49101378 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 104

Conread position: 321-654
Cow position: chr5:58747237-58747558 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 25

Conread position: 321-716
Cow position: chr5:23227604-23227996 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 36

Conread position: 324-696
Cow position: chr5:46659058-46659452 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 267
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 145, 31

Conread position: 335-719
Cow position: chr5:29008712-29009103 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 258
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 8, 180

Conread position: 336-586
Cow position: chr5:23688112-23687864 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 200, 0

Conread position: 336-654
Cow position: chr5:46644069-46644374 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 208
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 336-664
Cow position: chr5:6519263-6519569 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 336-693
Cow position: chr5:23716582-23716233 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 22

Conread position: 336-704
Cow position: chr5:54793259-54792889 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 174

Conread position: 336-713
Cow position: chr5:49594092-49593718 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 22

Conread position: 336-716
Cow position: chr5:27683386-27683029 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 279
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 13, 132

Conread position: 336-719
Cow position: chr5:6187919-6188310 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 259
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 35, 211

Conread position: 336-731
Cow position: chr5:4068349-4068745 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 174

Conread position: 336-731
Cow position: chr5:4384594-4384982 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 265
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 323, 35

Conread position: 336-731
Cow position: chr5:46739223-46738829 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 107

Conread position: 336-731
Cow position: chr5:57483182-57482791 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 25

Conread position: 336-731
Cow position: chr5:64782654-64782263 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 35

Conread position: 338-671
Cow position: chr5:58056374-58056044 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 223
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 29, 37

Conread position: 341-633
Cow position: chr5:10443838-10443554 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 188

Conread position: 341-654
Cow position: chr5:37755775-37755465 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 211
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 32, 25

Conread position: 341-719
Cow position: chr5:41530197-41529828 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 266
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 243, 20

Conread position: 341-730
Cow position: chr5:26079854-26079464 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 25

Conread position: 341-731
Cow position: chr5:4019834-4019443 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 58

Conread position: 341-731
Cow position: chr5:10844509-10844119 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 261
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 276, 14

Conread position: 341-731
Cow position: chr5:14379532-14379918 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 270
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 32, 140

Conread position: 341-731
Cow position: chr5:24576278-24576669 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 260
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 32, 14

Conread position: 341-731
Cow position: chr5:27909904-27909515 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 315, 169

Conread position: 341-731
Cow position: chr5:32674360-32673987 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 17

Conread position: 341-731
Cow position: chr5:48468908-48468521 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 266
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 276, 14

Conread position: 341-731
Cow position: chr5:59059982-59060376 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 17, 26

Conread position: 343-731
Cow position: chr5:59144145-59144537 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 263
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 30, 23

Conread position: 352-609
Cow position: chr5:61273790-61273538 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 186
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 28, 123

Conread position: 359-716
Cow position: chr5:39165415-39165057 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 10

Conread position: 363-699
Cow position: chr5:9687021-9686690 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 235
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 34, 132

Conread position: 366-691
Cow position: chr5:52804723-52805050 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 144

Conread position: 373-719
Cow position: chr5:49181682-49182019 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 240
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 286, 120

Conread position: 373-731
Cow position: chr5:45699677-45700039 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 250
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 236, 42

Conread position: 374-706
Cow position: chr5:31204198-31203874 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 225
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 119, 19

Conread position: 384-694
Cow position: chr5:32733835-32733528 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 275, 15

Conread position: 394-716
Cow position: chr5:41551506-41551187 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 265, 87

Conread position: 396-664
Cow position: chr5:12185079-12185344 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 186
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 114, 0

Conread position: 410-719
Cow position: chr5:29123366-29123058 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 44, 18

Conread position: 457-734
Cow position: chr5:54932738-54932460 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 192
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 162, 57

Show alignments to all cow chromosomes.