Cow genome map
| Conread name: | Lng1-LNG010021B07 |
| Conread position: | 256-731 |
| Cow position: | chr6:15281131-15280645 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 259-731 |
| Cow position: | chr6:39161635-39162096 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 260-731 |
| Cow position: | chr6:50498034-50497561 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 262-592 |
| Cow position: | chr6:66194553-66194224 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 10, 239 |
| Conread position: | 263-549 |
| Cow position: | chr6:2111534-2111246 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-620 |
| Cow position: | chr6:52093-51736 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 28, 59 |
| Conread position: | 263-638 |
| Cow position: | chr6:24238470-24238847 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-719 |
| Cow position: | chr6:21686321-21686773 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-725 |
| Cow position: | chr6:40555191-40554701 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 321 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 263-731 |
| Cow position: | chr6:1823820-1823352 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 263-731 |
| Cow position: | chr6:34893588-34893112 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 263-731 |
| Cow position: | chr6:65841012-65841492 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 271-719 |
| Cow position: | chr6:48367865-48368277 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 70 |
| Conread position: | 272-479 |
| Cow position: | chr6:66538761-66538970 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 5, 68 |
| Conread position: | 278-719 |
| Cow position: | chr6:42360224-42359794 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 63 |
| Conread position: | 280-498 |
| Cow position: | chr6:59741576-59741361 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 60, 80 |
| Conread position: | 281-731 |
| Cow position: | chr6:8201173-8201629 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 284-616 |
| Cow position: | chr6:25357114-25357450 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 236 |
| Conread position: | 284-647 |
| Cow position: | chr6:28509075-28509435 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 284-710 |
| Cow position: | chr6:51189992-51190414 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 145 |
| Conread position: | 284-719 |
| Cow position: | chr6:913075-913514 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 284-719 |
| Cow position: | chr6:55544883-55544441 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 284-731 |
| Cow position: | chr6:15141726-15141278 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 304 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 284-731 |
| Cow position: | chr6:21971121-21971571 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 285-465 |
| Cow position: | chr6:51584555-51584367 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 285-731 |
| Cow position: | chr6:36525490-36525940 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 286-731 |
| Cow position: | chr6:5951789-5951339 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 288-683 |
| Cow position: | chr6:7180211-7179835 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 69 |
| Conread position: | 305-731 |
| Cow position: | chr6:13943384-13943808 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 312, 16 |
| Conread position: | 312-716 |
| Cow position: | chr6:63198652-63198261 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 313-719 |
| Cow position: | chr6:1384366-1383960 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 192 |
| Conread position: | 322-719 |
| Cow position: | chr6:52803904-52804293 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 163 |
| Conread position: | 324-719 |
| Cow position: | chr6:65900421-65900033 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 92 |
| Conread position: | 324-731 |
| Cow position: | chr6:7141978-7141574 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 67 |
| Conread position: | 324-731 |
| Cow position: | chr6:17598795-17598382 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 14, 218 |
| Conread position: | 324-731 |
| Cow position: | chr6:45671756-45672162 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 333-716 |
| Cow position: | chr6:17045561-17045941 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 178 |
| Conread position: | 333-734 |
| Cow position: | chr6:29310992-29311390 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 178 |
| Conread position: | 335-731 |
| Cow position: | chr6:3889987-3889582 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 175 |
| Conread position: | 336-479 |
| Cow position: | chr6:2885747-2885889 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 336-482 |
| Cow position: | chr6:1101297-1101159 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 336-505 |
| Cow position: | chr6:37477743-37477911 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 336-716 |
| Cow position: | chr6:38231780-38232158 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 174 |
| Conread position: | 336-719 |
| Cow position: | chr6:6476949-6476569 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 80 |
| Conread position: | 336-719 |
| Cow position: | chr6:65880361-65880752 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 180 |
| Conread position: | 336-731 |
| Cow position: | chr6:3278449-3278053 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 95 |
| Conread position: | 336-731 |
| Cow position: | chr6:20561608-20561212 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 174 |
| Conread position: | 336-731 |
| Cow position: | chr6:27530494-27530106 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 30 |
| Conread position: | 336-731 |
| Cow position: | chr6:28274493-28274881 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 323, 35 |
| Conread position: | 336-731 |
| Cow position: | chr6:35877215-35876821 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 277 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 36, 99 |
| Conread position: | 336-731 |
| Cow position: | chr6:39437144-39437538 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 169 |
| Conread position: | 337-672 |
| Cow position: | chr6:2955451-2955123 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 165 |
| Conread position: | 337-719 |
| Cow position: | chr6:42723420-42723039 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 179 |
| Conread position: | 341-586 |
| Cow position: | chr6:52735910-52736149 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 341-606 |
| Cow position: | chr6:28106255-28105999 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 251, 25 |
| Conread position: | 341-638 |
| Cow position: | chr6:41757478-41757186 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 276, 19 |
| Conread position: | 341-639 |
| Cow position: | chr6:6935619-6935324 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 341-716 |
| Cow position: | chr6:43617221-43617599 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 170 |
| Conread position: | 341-719 |
| Cow position: | chr6:6566118-6566498 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 169 |
| Conread position: | 341-719 |
| Cow position: | chr6:30478605-30478976 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 315, 173 |
| Conread position: | 341-731 |
| Cow position: | chr6:331973-331571 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 78, 207 |
| Conread position: | 341-731 |
| Cow position: | chr6:39907662-39908047 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 276, 138 |
| Conread position: | 341-731 |
| Cow position: | chr6:68026287-68026679 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 341-734 |
| Cow position: | chr6:27169082-27169476 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 341-792 |
| Cow position: | chr6:40274763-40275219 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 152 |
| Conread position: | 342-693 |
| Cow position: | chr6:10559129-10558797 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 307, 49 |
| Conread position: | 342-700 |
| Cow position: | chr6:59919767-59919412 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 344-612 |
| Cow position: | chr6:33459093-33459360 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 5 |
| Conread position: | 344-719 |
| Cow position: | chr6:27468767-27469137 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 352-719 |
| Cow position: | chr6:701470-701840 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 353-654 |
| Cow position: | chr6:11278177-11277885 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 359-719 |
| Cow position: | chr6:19453457-19453808 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 300, 69 |
| Conread position: | 359-731 |
| Cow position: | chr6:65007369-65007733 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 195, 57 |
| Conread position: | 362-731 |
| Cow position: | chr6:11353263-11353639 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 383-813 |
| Cow position: | chr6:35421012-35420598 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 276, 38 |
| Conread position: | 384-668 |
| Cow position: | chr6:2401791-2402078 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 160 |
| Conread position: | 384-719 |
| Cow position: | chr6:42564496-42564829 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 94, 64 |
| Conread position: | 394-731 |
| Cow position: | chr6:40314470-40314799 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 270, 73 |
| Conread position: | 402-731 |
| Cow position: | chr6:28474276-28474599 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 172, 93 |
| Conread position: | 403-731 |
| Cow position: | chr6:8761733-8761403 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 249, 107 |
| Conread position: | 448-731 |
| Cow position: | chr6:31569314-31569038 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 211, 56 |
| Conread position: | 532-725 |
| Cow position: | chr6:37642093-37642293 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 89 |
Show alignments to all cow chromosomes.