Cow genome map

Conread name: Lng1-LNG010047D04

Conread position: 1-255
Cow position: chr5:57613476-57613726 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 98, 30

Conread position: 1-256
Cow position: chr5:43004354-43004095 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 108, 30

Conread position: 1-264
Cow position: chr5:32088180-32088446 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 98, 30

Conread position: 1-264
Cow position: chr5:33471928-33472194 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 102, 30

Conread position: 1-285
Cow position: chr5:54110801-54110521 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 108, 30

Conread position: 1-301
Cow position: chr5:30347377-30347678 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 30

Conread position: 1-310
Cow position: chr5:6286763-6287077 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 13, 31

Conread position: 1-316
Cow position: chr5:48405420-48405726 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 30

Conread position: 2-256
Cow position: chr5:19560907-19561162 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 103, 27

Conread position: 2-264
Cow position: chr5:46317842-46318102 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 192
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 113, 29

Conread position: 2-327
Cow position: chr5:4328855-4328539 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 87, 27

Conread position: 3-275
Cow position: chr5:46295094-46295361 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 130, 28

Conread position: 37-258
Cow position: chr5:34584618-34584845 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 65, 142

Conread position: 38-253
Cow position: chr5:50201438-50201654 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 73, 131

Conread position: 38-264
Cow position: chr5:33793440-33793206 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 66, 0

Conread position: 38-264
Cow position: chr5:37288757-37288518 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 184
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 65, 0

Conread position: 38-264
Cow position: chr5:48574228-48574465 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 38-280
Cow position: chr5:46104397-46104641 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 67, 128

Conread position: 38-308
Cow position: chr5:16206592-16206863 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 237

Conread position: 38-326
Cow position: chr5:41067574-41067265 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 72, 55

Conread position: 38-328
Cow position: chr5:24643262-24643556 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 72, 41

Conread position: 38-328
Cow position: chr5:25930340-25930641 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 219
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 66, 123

Conread position: 40-256
Cow position: chr5:10096284-10096502 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 72, 112

Conread position: 43-265
Cow position: chr5:21547734-21547959 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 45-205
Cow position: chr5:48535359-48535191 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 45-293
Cow position: chr5:8996457-8996704 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 77, 184

Conread position: 48-257
Cow position: chr5:25928147-25928363 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 103

Conread position: 577-790
Cow position: chr5:7140832-7141046 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 100, 64

Conread position: 577-795
Cow position: chr5:23754088-23754300 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 577-797
Cow position: chr5:7553032-7552823 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 171
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 99, 43

Conread position: 577-797
Cow position: chr5:31560521-31560291 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 18, 0

Conread position: 578-781
Cow position: chr5:16100294-16100493 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 95, 121

Conread position: 578-792
Cow position: chr5:55088121-55087905 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 98, 0

Conread position: 578-796
Cow position: chr5:8529912-8529699 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 169
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 38, 0

Conread position: 578-796
Cow position: chr5:24221262-24221045 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 99, 200

Conread position: 578-797
Cow position: chr5:17027332-17027124 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 40, 0

Conread position: 578-797
Cow position: chr5:51502151-51501931 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 86

Conread position: 578-797
Cow position: chr5:67654591-67654373 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 36, 77

Conread position: 578-797
Cow position: chr5:71456780-71456999 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 48, 34

Conread position: 580-766
Cow position: chr5:2395043-2395230 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chr5:709887-710104 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 96, 23

Conread position: 580-797
Cow position: chr5:6585189-6585406 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 96, 132

Conread position: 580-797
Cow position: chr5:15723050-15723269 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 63, 0

Conread position: 580-797
Cow position: chr5:18118710-18118928 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chr5:25912983-25912767 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 63, 158

Conread position: 580-797
Cow position: chr5:30582591-30582373 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chr5:34683097-34683313 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 66, 61

Conread position: 580-797
Cow position: chr5:42744055-42743839 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 96, 64

Conread position: 580-797
Cow position: chr5:44617410-44617192 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chr5:53075605-53075823 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 96, 0

Conread position: 584-797
Cow position: chr5:6180800-6180583 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 92, 35

Conread position: 586-797
Cow position: chr5:6694793-6694581 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 90, 0

Conread position: 586-797
Cow position: chr5:46667333-46667121 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 85, 0

Conread position: 587-797
Cow position: chr5:16894892-16895099 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 89, 107

Conread position: 588-797
Cow position: chr5:12212790-12212580 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 88, 0

Conread position: 588-797
Cow position: chr5:29223008-29223218 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 88, 0

Conread position: 588-797
Cow position: chr5:42283420-42283217 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 44

Conread position: 588-797
Cow position: chr5:54927662-54927872 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 88, 0

Conread position: 588-797
Cow position: chr5:54929990-54930200 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 88, 0

Conread position: 589-797
Cow position: chr5:41228793-41229000 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 87, 67

Conread position: 594-797
Cow position: chr5:29769311-29769107 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 78, 0

Conread position: 595-797
Cow position: chr5:29558842-29558644 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 136

Conread position: 595-797
Cow position: chr5:40792082-40791883 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 81, 14

Conread position: 596-797
Cow position: chr5:73444649-73444445 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 80, 0

Conread position: 597-795
Cow position: chr5:19969794-19969983 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 159, 73

Conread position: 598-790
Cow position: chr5:1230050-1229860 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 78, 23

Conread position: 598-792
Cow position: chr5:41356596-41356790 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 78, 105

Conread position: 598-797
Cow position: chr5:34523993-34524190 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 78, 90

Conread position: 599-797
Cow position: chr5:2704305-2704505 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 160
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 46, 0

Conread position: 600-787
Cow position: chr5:5937551-5937363 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 600-792
Cow position: chr5:64845023-64845215 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 76, 41

Conread position: 600-795
Cow position: chr5:62377610-62377415 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 76, 43

Conread position: 600-797
Cow position: chr5:32697546-32697755 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 17, 56

Conread position: 601-791
Cow position: chr5:28013101-28012910 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 75, 0

Conread position: 601-793
Cow position: chr5:295509-295316 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chr5:445723-445526 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chr5:1059323-1059520 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chr5:10066306-10066503 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chr5:12337518-12337321 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 601-797
Cow position: chr5:24577680-24577483 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chr5:24632795-24632992 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chr5:26052975-26052778 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chr5:26073544-26073739 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 75, 83

Conread position: 601-797
Cow position: chr5:36369748-36369945 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chr5:36906818-36907015 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chr5:54136394-54136591 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chr5:54951878-54952075 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 605-793
Cow position: chr5:76098790-76098979 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 71, 0

Conread position: 606-796
Cow position: chr5:41391970-41391777 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 28, 139

Conread position: 606-797
Cow position: chr5:38848346-38848538 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 70, 0

Conread position: 608-792
Cow position: chr5:70402116-70401932 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 21, 63

Conread position: 612-797
Cow position: chr5:20107794-20107980 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 64, 0

Conread position: 614-797
Cow position: chr5:37626090-37625906 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 616-792
Cow position: chr5:26082406-26082579 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 87

Conread position: 623-797
Cow position: chr5:2203169-2203344 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 53, 0

Conread position: 638-793
Cow position: chr5:47696999-47697155 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 655-797
Cow position: chr5:13630304-13630447 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 656-797
Cow position: chr5:69771252-69771108 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 122
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 5, 0

Conread position: 682-797
Cow position: chr5:50604192-50604307 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.