Cow genome map

Conread name: Lng1-LNG010047D04

Conread position: 1-220
Cow position: chrX:21662676-21662458 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 139, 30

Conread position: 1-310
Cow position: chrX:29722793-29722465 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 91, 30

Conread position: 27-214
Cow position: chrX:37071963-37071767 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 38-262
Cow position: chrX:23135128-23134891 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 11, 188

Conread position: 38-262
Cow position: chrX:30172157-30172395 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 65, 0

Conread position: 38-263
Cow position: chrX:24441699-24441928 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 38-326
Cow position: chrX:8103752-8104051 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 161

Conread position: 38-338
Cow position: chrX:33803470-33803777 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 226
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 73, 113

Conread position: 40-250
Cow position: chrX:42530946-42531157 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 65, 181

Conread position: 40-283
Cow position: chrX:14924585-14924339 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 62

Conread position: 45-263
Cow position: chrX:44961257-44961033 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 121

Conread position: 47-200
Cow position: chrX:18509877-18510030 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 62

Conread position: 53-205
Cow position: chrX:12852970-12853128 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 577-795
Cow position: chrX:9899099-9899312 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 90, 0

Conread position: 577-796
Cow position: chrX:6044224-6044433 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 171
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 99, 39

Conread position: 577-797
Cow position: chrX:29907958-29908179 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 148
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 99, 0

Conread position: 577-797
Cow position: chrX:40693485-40693709 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 99, 176

Conread position: 578-774
Cow position: chrX:16021133-16021329 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 98, 136

Conread position: 578-785
Cow position: chrX:20790297-20790505 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 100, 0

Conread position: 578-795
Cow position: chrX:21626458-21626673 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 17

Conread position: 578-795
Cow position: chrX:22125612-22125830 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 43, 84

Conread position: 578-797
Cow position: chrX:1616991-1617210 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 98, 198

Conread position: 578-797
Cow position: chrX:4482199-4481990 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 23, 0

Conread position: 578-797
Cow position: chrX:6655793-6655995 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 62, 0

Conread position: 578-797
Cow position: chrX:11744510-11744293 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 98, 124

Conread position: 578-797
Cow position: chrX:16325284-16325506 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 170
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 155, 0

Conread position: 578-797
Cow position: chrX:19929678-19929459 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 98, 182

Conread position: 578-797
Cow position: chrX:20801026-20800812 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 98, 60

Conread position: 578-797
Cow position: chrX:24109361-24109581 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 93, 0

Conread position: 578-797
Cow position: chrX:31261390-31261610 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 21

Conread position: 580-793
Cow position: chrX:4905749-4905960 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 96, 48

Conread position: 580-796
Cow position: chrX:7485048-7484831 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 96, 0

Conread position: 580-796
Cow position: chrX:10412734-10412951 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chrX:620023-620241 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 45, 50

Conread position: 580-797
Cow position: chrX:3649582-3649796 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 96, 61

Conread position: 580-797
Cow position: chrX:6372421-6372203 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chrX:9642191-9642409 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chrX:12346137-12345919 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chrX:15260378-15260596 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chrX:16086882-16087100 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 96, 163

Conread position: 580-797
Cow position: chrX:19399019-19398801 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chrX:19608917-19608698 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chrX:24467883-24468100 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 580-797
Cow position: chrX:30163997-30164215 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chrX:30199751-30199969 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 96, 0

Conread position: 580-797
Cow position: chrX:34761307-34761089 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 91, 0

Conread position: 580-797
Cow position: chrX:46296902-46296685 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 96, 117

Conread position: 581-797
Cow position: chrX:4407123-4406906 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 166
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 95, 0

Conread position: 582-797
Cow position: chrX:2300121-2299909 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 94, 121

Conread position: 586-797
Cow position: chrX:5646869-5647081 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 90, 0

Conread position: 586-797
Cow position: chrX:9128291-9128078 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 586-797
Cow position: chrX:12651585-12651797 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 90, 0

Conread position: 586-797
Cow position: chrX:13928507-13928719 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 0

Conread position: 586-797
Cow position: chrX:27758943-27758732 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 90, 37

Conread position: 586-797
Cow position: chrX:39185408-39185196 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 64, 71

Conread position: 588-796
Cow position: chrX:36195325-36195120 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 75, 0

Conread position: 589-796
Cow position: chrX:25573585-25573376 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 592-797
Cow position: chrX:27616041-27615837 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 91, 178

Conread position: 595-797
Cow position: chrX:17663690-17663891 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 88, 177

Conread position: 600-797
Cow position: chrX:39559142-39559330 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 76, 40

Conread position: 601-781
Cow position: chrX:5427480-5427299 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 49, 56

Conread position: 601-793
Cow position: chrX:5361230-5361037 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 601-796
Cow position: chrX:39730919-39731113 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 75, 49

Conread position: 601-797
Cow position: chrX:2293380-2293577 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:4342971-4342774 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:7120827-7120630 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:9763851-9764048 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:10059685-10059488 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 72, 0

Conread position: 601-797
Cow position: chrX:11409114-11409311 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:12145322-12145122 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 601-797
Cow position: chrX:13206172-13205978 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 48

Conread position: 601-797
Cow position: chrX:15977733-15977930 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:16085438-16085635 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:18023772-18023969 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:27305149-27304952 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:28058542-28058345 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:29225698-29225501 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:30053248-30053445 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:30836607-30836410 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 601-797
Cow position: chrX:30964766-30964963 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:32643706-32643509 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:33685351-33685154 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:33763365-33763168 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:34094926-34094729 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 601-797
Cow position: chrX:36729604-36729407 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 603-797
Cow position: chrX:6453915-6453720 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 73, 0

Conread position: 604-797
Cow position: chrX:8641005-8640811 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 135
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 604-797
Cow position: chrX:42222556-42222746 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 72, 119

Conread position: 619-797
Cow position: chrX:5841514-5841337 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 70

Conread position: 641-797
Cow position: chrX:29930212-29930369 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 643-797
Cow position: chrX:11074007-11074160 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 126
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 33, 62

Conread position: 655-797
Cow position: chrX:19473982-19474125 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 656-797
Cow position: chrX:29047280-29047138 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 0

Show alignments to all cow chromosomes.