Cow genome map

Conread name: Lng1-LNG010062C07

Conread position: 2-240
Cow position: chr10:55092848-55093086 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 2-571
Cow position: chr10:280881-280315 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 29

Conread position: 2-571
Cow position: chr10:4192474-4191920 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 25

Conread position: 2-571
Cow position: chr10:41566847-41567409 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 29

Conread position: 7-538
Cow position: chr10:24314086-24313564 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 121

Conread position: 17-414
Cow position: chr10:60489415-60489801 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 114

Conread position: 17-447
Cow position: chr10:4499462-4499861 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 17-571
Cow position: chr10:29695993-29696537 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 35

Conread position: 17-573
Cow position: chr10:46191136-46191665 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 422, 27

Conread position: 20-571
Cow position: chr10:21400918-21400365 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 219

Conread position: 22-574
Cow position: chr10:41351987-41351451 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 422, 35

Conread position: 25-573
Cow position: chr10:14859738-14860271 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 204

Conread position: 27-571
Cow position: chr10:14803597-14804142 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 210

Conread position: 27-571
Cow position: chr10:21740986-21740446 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 97

Conread position: 27-571
Cow position: chr10:41876680-41877224 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 211

Conread position: 27-571
Cow position: chr10:47906543-47907084 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 97

Conread position: 27-571
Cow position: chr10:51952839-51952316 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 97

Conread position: 27-571
Cow position: chr10:57559784-57559230 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 22

Conread position: 27-572
Cow position: chr10:32578066-32578596 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 421, 197

Conread position: 27-573
Cow position: chr10:16475528-16476064 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 347
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 15, 56

Conread position: 28-466
Cow position: chr10:38847136-38847558 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 97

Conread position: 28-573
Cow position: chr10:24299090-24298552 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 203

Conread position: 29-565
Cow position: chr10:34685661-34686194 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 14

Conread position: 30-394
Cow position: chr10:42747865-42748217 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 252
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 21, 138

Conread position: 31-565
Cow position: chr10:32063915-32064457 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 60

Conread position: 31-573
Cow position: chr10:62409085-62408549 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 174

Conread position: 33-289
Cow position: chr10:64303202-64302949 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 85, 74

Conread position: 33-412
Cow position: chr10:19839922-19840298 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 33

Conread position: 33-495
Cow position: chr10:276363-276818 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 17

Conread position: 33-530
Cow position: chr10:29633090-29632599 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 92

Conread position: 33-569
Cow position: chr10:41389784-41389241 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 350
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 128, 35

Conread position: 33-571
Cow position: chr10:10478377-10477830 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 84

Conread position: 33-571
Cow position: chr10:11685897-11685365 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 93

Conread position: 33-571
Cow position: chr10:25498125-25498658 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 17

Conread position: 33-571
Cow position: chr10:25565477-25564952 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 210

Conread position: 33-571
Cow position: chr10:38546454-38545919 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 196

Conread position: 33-571
Cow position: chr10:39817581-39817057 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 150

Conread position: 33-571
Cow position: chr10:41157218-41157753 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 45

Conread position: 33-571
Cow position: chr10:62778112-62778654 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 206

Conread position: 33-572
Cow position: chr10:3543810-3543281 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 30

Conread position: 34-317
Cow position: chr10:37060700-37060972 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 90, 0

Conread position: 34-391
Cow position: chr10:29846840-29846485 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 209

Conread position: 34-562
Cow position: chr10:38538720-38538196 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 26

Conread position: 34-573
Cow position: chr10:1375306-1375841 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 192

Conread position: 34-573
Cow position: chr10:7282913-7282379 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 157

Conread position: 34-573
Cow position: chr10:8289740-8290286 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 170

Conread position: 34-573
Cow position: chr10:21486686-21487223 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 157

Conread position: 34-573
Cow position: chr10:22101011-22101538 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 157

Conread position: 34-573
Cow position: chr10:25359169-25359707 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 157

Conread position: 34-573
Cow position: chr10:37769592-37770129 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 204

Conread position: 34-573
Cow position: chr10:38345593-38345054 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 204

Conread position: 34-573
Cow position: chr10:39041535-39040994 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 145

Conread position: 34-573
Cow position: chr10:57990194-57989686 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 505, 208

Conread position: 35-297
Cow position: chr10:20383768-20383516 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 21, 0

Conread position: 35-522
Cow position: chr10:19143568-19143082 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 156

Conread position: 35-569
Cow position: chr10:62216377-62216910 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 202

Conread position: 35-573
Cow position: chr10:124080-124618 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 156

Conread position: 35-573
Cow position: chr10:19511378-19511914 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 48

Conread position: 35-573
Cow position: chr10:24978359-24977831 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 83

Conread position: 37-571
Cow position: chr10:19496500-19495980 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 16

Conread position: 37-571
Cow position: chr10:39179555-39180089 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 105

Conread position: 40-569
Cow position: chr10:58860896-58860382 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 337
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 281, 84

Conread position: 43-297
Cow position: chr10:8328531-8328296 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 13, 0

Conread position: 44-416
Cow position: chr10:39881490-39881109 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 259
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 191, 80

Conread position: 44-573
Cow position: chr10:32650511-32651041 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 195

Conread position: 50-471
Cow position: chr10:54059565-54059151 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 45

Conread position: 56-573
Cow position: chr10:42109524-42110020 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 98

Conread position: 59-378
Cow position: chr10:21518537-21518230 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 35, 0

Conread position: 67-571
Cow position: chr10:13366050-13365564 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 172

Conread position: 77-571
Cow position: chr10:184078-184580 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 343
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 184, 47

Conread position: 83-316
Cow position: chr10:31537146-31537375 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 54

Conread position: 89-465
Cow position: chr10:28116598-28116237 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 252
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 38, 0

Conread position: 98-447
Cow position: chr10:57575447-57575785 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 232
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 222, 20

Conread position: 104-341
Cow position: chr10:65307963-65308198 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 215, 133

Conread position: 107-573
Cow position: chr10:14928491-14928929 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 317
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 52, 45

Conread position: 118-573
Cow position: chr10:44294697-44295142 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 304
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 39, 18

Conread position: 127-555
Cow position: chr10:39904789-39905231 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 111

Conread position: 127-569
Cow position: chr10:15862272-15861835 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 64

Conread position: 127-571
Cow position: chr10:46694516-46694070 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 117

Conread position: 133-565
Cow position: chr10:10415299-10415699 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 64

Conread position: 136-573
Cow position: chr10:38404636-38404201 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 291
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 309, 83

Conread position: 146-571
Cow position: chr10:39854133-39853704 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 92

Conread position: 158-573
Cow position: chr10:14951794-14952177 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 281
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 382, 11

Conread position: 161-573
Cow position: chr10:16925431-16925843 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 78

Conread position: 168-573
Cow position: chr10:58377687-58377299 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 278
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 92, 59

Conread position: 173-572
Cow position: chr10:38526835-38527209 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 276
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 272, 11

Conread position: 200-571
Cow position: chr10:2123327-2122956 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 42

Conread position: 237-573
Cow position: chr10:40751620-40751955 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 24, 17

Conread position: 238-573
Cow position: chr10:34318322-34317987 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 233

Conread position: 244-468
Cow position: chr10:54979905-54979681 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 79, 40

Conread position: 244-572
Cow position: chr10:49310481-49310793 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 123

Conread position: 249-573
Cow position: chr10:40152474-40152146 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 163

Conread position: 251-570
Cow position: chr10:11820315-11820636 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 73, 81

Conread position: 263-573
Cow position: chr10:20371969-20371670 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 99, 49

Conread position: 268-522
Cow position: chr10:55093241-55093495 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 52, 79

Conread position: 269-465
Cow position: chr10:39445139-39444941 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 68

Conread position: 294-582
Cow position: chr10:10581817-10582120 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 26, 51

Conread position: 301-573
Cow position: chr10:6260764-6260489 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 182
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 46

Conread position: 319-514
Cow position: chr10:28931973-28931778 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 120, 190

Conread position: 319-570
Cow position: chr10:19758403-19758653 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 137, 124

Conread position: 319-571
Cow position: chr10:33346653-33346906 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 44

Conread position: 332-573
Cow position: chr10:23431873-23432119 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 17, 238

Conread position: 346-573
Cow position: chr10:8328193-8327963 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 82, 18

Conread position: 376-572
Cow position: chr10:42628732-42628930 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 63, 0

Conread position: 377-573
Cow position: chr10:31537376-31537572 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 71, 128

Conread position: 381-570
Cow position: chr10:31523913-31524103 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 147
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 158, 0

Conread position: 392-565
Cow position: chr10:47157073-47157251 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 56, 137

Show alignments to all cow chromosomes.