Cow genome map

Conread name: Lng1-LNG010062C07

Conread position: 2-545
Cow position: chr11:63660207-63659663 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 236

Conread position: 2-571
Cow position: chr11:17108309-17107742 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 29

Conread position: 2-571
Cow position: chr11:19064873-19064305 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 29

Conread position: 2-571
Cow position: chr11:37477740-37477175 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 122

Conread position: 2-571
Cow position: chr11:67847190-67846627 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 29

Conread position: 4-310
Cow position: chr11:49076291-49076009 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 217
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 178, 129

Conread position: 4-568
Cow position: chr11:9158043-9157492 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 45

Conread position: 4-571
Cow position: chr11:8262323-8261760 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 127

Conread position: 4-571
Cow position: chr11:17220834-17220271 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 206

Conread position: 4-571
Cow position: chr11:21466454-21467021 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 233

Conread position: 4-573
Cow position: chr11:42428707-42429279 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 189

Conread position: 5-434
Cow position: chr11:28050400-28049988 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 12

Conread position: 17-481
Cow position: chr11:44496197-44495742 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 98

Conread position: 17-571
Cow position: chr11:34020299-34020834 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 7

Conread position: 25-308
Cow position: chr11:11126315-11126592 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 94

Conread position: 25-573
Cow position: chr11:44895619-44895057 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 167

Conread position: 26-573
Cow position: chr11:71329044-71329590 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 190

Conread position: 27-570
Cow position: chr11:32450268-32450810 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 210

Conread position: 27-571
Cow position: chr11:4041660-4041132 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 97

Conread position: 27-571
Cow position: chr11:20921345-20920801 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 210

Conread position: 27-571
Cow position: chr11:36744777-36744236 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 97

Conread position: 27-571
Cow position: chr11:53288054-53287511 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 217

Conread position: 27-571
Cow position: chr11:57628646-57628102 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 210

Conread position: 27-575
Cow position: chr11:33044715-33044174 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 30

Conread position: 28-444
Cow position: chr11:35389383-35388975 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 265
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 45

Conread position: 28-571
Cow position: chr11:87127246-87127782 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 100

Conread position: 29-441
Cow position: chr11:10218150-10217757 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 270
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 322, 25

Conread position: 29-573
Cow position: chr11:36761498-36762030 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 21

Conread position: 29-604
Cow position: chr11:44861122-44860551 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 208

Conread position: 31-543
Cow position: chr11:10210558-10210047 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 95

Conread position: 31-573
Cow position: chr11:43515228-43514684 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 211

Conread position: 32-571
Cow position: chr11:75919826-75920346 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 95

Conread position: 32-573
Cow position: chr11:11987526-11988053 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 206

Conread position: 32-573
Cow position: chr11:58133778-58134333 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 92

Conread position: 33-360
Cow position: chr11:9736545-9736221 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 227
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 286, 150

Conread position: 33-571
Cow position: chr11:3492420-3492955 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 17

Conread position: 33-571
Cow position: chr11:8887743-8887214 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 164

Conread position: 33-571
Cow position: chr11:9659987-9659443 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 91

Conread position: 33-571
Cow position: chr11:12351656-12351121 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 123

Conread position: 33-571
Cow position: chr11:25526984-25527502 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 85

Conread position: 33-571
Cow position: chr11:28230342-28229809 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 126

Conread position: 33-571
Cow position: chr11:37492237-37491702 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 76

Conread position: 33-571
Cow position: chr11:54209034-54209556 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 90

Conread position: 33-571
Cow position: chr11:67449897-67450442 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 211

Conread position: 34-482
Cow position: chr11:15998306-15998747 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 128

Conread position: 34-508
Cow position: chr11:44157825-44157357 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 89

Conread position: 34-571
Cow position: chr11:1496659-1496130 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 37

Conread position: 34-573
Cow position: chr11:4028142-4027617 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 192

Conread position: 34-573
Cow position: chr11:4271458-4270915 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 38

Conread position: 34-573
Cow position: chr11:8244130-8244650 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 68

Conread position: 34-573
Cow position: chr11:10846853-10847388 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 16

Conread position: 34-573
Cow position: chr11:12359014-12358479 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 208

Conread position: 34-573
Cow position: chr11:19103078-19102540 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 122

Conread position: 34-573
Cow position: chr11:23876712-23877248 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 204

Conread position: 34-573
Cow position: chr11:24392734-24393263 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 80

Conread position: 34-573
Cow position: chr11:26125520-26124985 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 90

Conread position: 34-573
Cow position: chr11:28055186-28054654 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 90

Conread position: 34-573
Cow position: chr11:29234240-29233719 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 108

Conread position: 34-573
Cow position: chr11:29669221-29668685 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 203

Conread position: 34-573
Cow position: chr11:37093654-37093116 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 204

Conread position: 34-573
Cow position: chr11:38836009-38835485 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 204

Conread position: 34-573
Cow position: chr11:41171285-41170746 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 157

Conread position: 34-573
Cow position: chr11:72110551-72110019 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 15

Conread position: 34-573
Cow position: chr11:77729118-77728574 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 190

Conread position: 35-571
Cow position: chr11:28063097-28063620 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 204

Conread position: 36-571
Cow position: chr11:52418801-52419332 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 88

Conread position: 36-573
Cow position: chr11:85394399-85393865 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 193

Conread position: 37-555
Cow position: chr11:30125835-30125335 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 36

Conread position: 39-357
Cow position: chr11:77235174-77235494 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 228
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 85, 207

Conread position: 44-571
Cow position: chr11:15983047-15983568 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 59

Conread position: 46-403
Cow position: chr11:32071535-32071877 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 249
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 219, 6

Conread position: 50-306
Cow position: chr11:8896065-8896314 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 65

Conread position: 58-573
Cow position: chr11:44230564-44231059 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 64-555
Cow position: chr11:30304687-30305157 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 62

Conread position: 64-571
Cow position: chr11:7113039-7113538 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 101

Conread position: 76-569
Cow position: chr11:9607125-9606636 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 166

Conread position: 80-573
Cow position: chr11:39833208-39833698 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 320
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 119, 67

Conread position: 95-571
Cow position: chr11:61401568-61401107 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 32

Conread position: 117-571
Cow position: chr11:45110851-45111313 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 105

Conread position: 130-463
Cow position: chr11:34750226-34750566 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 223
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 24, 107

Conread position: 134-570
Cow position: chr11:8282586-8283018 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 95

Conread position: 135-537
Cow position: chr11:81853113-81852723 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 11

Conread position: 141-510
Cow position: chr11:10049639-10050002 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 52

Conread position: 153-478
Cow position: chr11:13067484-13067172 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 283, 90

Conread position: 153-478
Cow position: chr11:13162520-13162832 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 222
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 283, 90

Conread position: 167-569
Cow position: chr11:10089876-10090278 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 62

Conread position: 184-534
Cow position: chr11:66726023-66726370 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 59

Conread position: 197-442
Cow position: chr11:62216528-62216290 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 163
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 152, 44

Conread position: 200-571
Cow position: chr11:37065550-37065174 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 35

Conread position: 208-571
Cow position: chr11:5343636-5343273 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 29

Conread position: 238-470
Cow position: chr11:30186907-30187138 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 26, 19

Conread position: 238-570
Cow position: chr11:64045605-64045941 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 241-477
Cow position: chr11:32684899-32685133 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 205, 73

Conread position: 254-562
Cow position: chr11:40776917-40776607 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 7

Conread position: 281-478
Cow position: chr11:7688265-7688460 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 158, 36

Conread position: 292-570
Cow position: chr11:73476969-73477251 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 28, 0

Conread position: 302-573
Cow position: chr11:31414251-31413987 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 141, 17

Conread position: 339-565
Cow position: chr11:8519703-8519930 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 104, 148

Conread position: 347-570
Cow position: chr11:9734929-9734705 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 101, 145

Conread position: 348-562
Cow position: chr11:17280575-17280363 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 91, 166

Conread position: 376-571
Cow position: chr11:38505857-38505661 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 88

Conread position: 392-573
Cow position: chr11:4065471-4065283 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 400-573
Cow position: chr11:12093328-12093503 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 408-571
Cow position: chr11:77235494-77235659 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 413-571
Cow position: chr11:9220336-9220176 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 424-571
Cow position: chr11:7316668-7316814 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 62

Show alignments to all cow chromosomes.