Cow genome map

Conread name: Lng1-LNG010062C07

Conread position: 1-571
Cow position: chr16:51685414-51685975 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 69

Conread position: 4-434
Cow position: chr16:54647301-54647718 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 20

Conread position: 17-537
Cow position: chr16:36232617-36232110 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 107

Conread position: 17-571
Cow position: chr16:32935129-32935714 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 109

Conread position: 18-501
Cow position: chr16:40887280-40886791 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 64

Conread position: 18-573
Cow position: chr16:31376245-31375740 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 58

Conread position: 19-395
Cow position: chr16:52815635-52815275 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 95

Conread position: 23-561
Cow position: chr16:42051359-42050857 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 63

Conread position: 27-310
Cow position: chr16:16687867-16688146 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 192

Conread position: 27-437
Cow position: chr16:32605825-32606233 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 210

Conread position: 27-476
Cow position: chr16:54180680-54180232 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 311
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 127, 15

Conread position: 27-478
Cow position: chr16:4303472-4303031 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 93

Conread position: 27-570
Cow position: chr16:5918482-5919022 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 210

Conread position: 27-571
Cow position: chr16:6942620-6943172 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 210

Conread position: 27-573
Cow position: chr16:9929554-9930080 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 97

Conread position: 27-573
Cow position: chr16:24155432-24154902 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 23

Conread position: 28-409
Cow position: chr16:29676308-29675934 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 210

Conread position: 28-468
Cow position: chr16:56164804-56165237 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 278
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 42

Conread position: 28-565
Cow position: chr16:47562687-47563225 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 101

Conread position: 28-573
Cow position: chr16:25440619-25441166 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 12

Conread position: 31-570
Cow position: chr16:11052173-11052699 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 94

Conread position: 31-570
Cow position: chr16:42740419-42739885 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 22

Conread position: 31-571
Cow position: chr16:10808171-10808690 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 508, 18

Conread position: 33-463
Cow position: chr16:5888488-5888893 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 50

Conread position: 33-551
Cow position: chr16:2239726-2239212 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 41

Conread position: 33-571
Cow position: chr16:5660864-5661390 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 204

Conread position: 33-571
Cow position: chr16:7905647-7906159 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 74

Conread position: 33-571
Cow position: chr16:20255303-20254771 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 27

Conread position: 33-571
Cow position: chr16:25084625-25085161 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 197

Conread position: 33-571
Cow position: chr16:25157213-25156683 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 104

Conread position: 33-571
Cow position: chr16:28171355-28170823 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 156

Conread position: 33-571
Cow position: chr16:49257560-49257043 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 49

Conread position: 33-573
Cow position: chr16:41559680-41560193 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 71

Conread position: 33-574
Cow position: chr16:6549517-6548981 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 41

Conread position: 34-414
Cow position: chr16:18688120-18687744 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 10

Conread position: 34-433
Cow position: chr16:1430232-1430623 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 174

Conread position: 34-568
Cow position: chr16:23982316-23982848 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 204

Conread position: 34-572
Cow position: chr16:15491712-15492250 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 204

Conread position: 34-573
Cow position: chr16:408027-407489 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 101

Conread position: 34-573
Cow position: chr16:1568445-1567912 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 70

Conread position: 34-573
Cow position: chr16:2411965-2411427 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 195

Conread position: 34-573
Cow position: chr16:2484132-2483600 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 90

Conread position: 34-573
Cow position: chr16:2728308-2727746 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 118

Conread position: 34-573
Cow position: chr16:8817100-8816562 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 122

Conread position: 34-573
Cow position: chr16:10204410-10203888 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 74

Conread position: 34-573
Cow position: chr16:10437262-10437785 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 90

Conread position: 34-573
Cow position: chr16:12538920-12538383 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 203

Conread position: 34-573
Cow position: chr16:15565755-15566286 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 157

Conread position: 34-573
Cow position: chr16:23253498-23252965 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 29

Conread position: 34-573
Cow position: chr16:25340976-25341507 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 10

Conread position: 34-573
Cow position: chr16:26662755-26663291 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 90

Conread position: 34-573
Cow position: chr16:27734800-27734260 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 205

Conread position: 34-573
Cow position: chr16:28472091-28471559 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 157

Conread position: 34-573
Cow position: chr16:29046025-29046564 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 208

Conread position: 34-573
Cow position: chr16:40297170-40296636 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 56

Conread position: 34-573
Cow position: chr16:43898264-43897729 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 208

Conread position: 35-447
Cow position: chr16:26518003-26517604 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 264
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 22, 71

Conread position: 35-466
Cow position: chr16:16276502-16276073 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 186

Conread position: 35-573
Cow position: chr16:15183812-15184345 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 89

Conread position: 35-573
Cow position: chr16:31592901-31592365 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 205

Conread position: 36-571
Cow position: chr16:31756-32278 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 37

Conread position: 36-571
Cow position: chr16:36282405-36282937 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 182

Conread position: 44-573
Cow position: chr16:25458456-25457923 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 75

Conread position: 55-570
Cow position: chr16:25187668-25188181 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 6

Conread position: 64-568
Cow position: chr16:36362313-36361825 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 81

Conread position: 65-573
Cow position: chr16:836073-836571 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 15

Conread position: 67-538
Cow position: chr16:28438744-28438281 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 302
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 368, 68

Conread position: 69-571
Cow position: chr16:56551168-56551660 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 168

Conread position: 80-520
Cow position: chr16:5651802-5652227 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 161

Conread position: 86-574
Cow position: chr16:39820695-39821173 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 40

Conread position: 117-573
Cow position: chr16:34529413-34529863 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 126

Conread position: 127-573
Cow position: chr16:5483419-5483865 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 10

Conread position: 129-573
Cow position: chr16:335399-335831 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 17

Conread position: 133-569
Cow position: chr16:16029890-16030322 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 282
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 45, 26

Conread position: 145-573
Cow position: chr16:14666715-14666287 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 97

Conread position: 162-357
Cow position: chr16:30047657-30047849 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 44, 70

Conread position: 245-573
Cow position: chr16:10566069-10565740 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 217
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 75, 12

Conread position: 266-569
Cow position: chr16:44966402-44966704 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 206
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 143

Conread position: 268-573
Cow position: chr16:9777317-9777627 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 93

Conread position: 270-571
Cow position: chr16:33611844-33611537 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 50, 118

Conread position: 273-573
Cow position: chr16:18500106-18499811 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 204
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 26, 66

Conread position: 276-571
Cow position: chr16:19713643-19713349 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 122

Conread position: 331-569
Cow position: chr16:49235848-49235613 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 113, 32

Conread position: 337-570
Cow position: chr16:53045657-53045893 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 55, 0

Conread position: 348-569
Cow position: chr16:48681760-48681539 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 146
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 349-573
Cow position: chr16:41758131-41757906 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 189, 0

Conread position: 396-571
Cow position: chr16:52815124-52814951 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 49, 104

Conread position: 410-571
Cow position: chr16:29033094-29033257 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 127, 0

Show alignments to all cow chromosomes.