Cow genome map
| Conread name: | Lng1-LNG010062C07 |
| Conread position: | 1-570 |
| Cow position: | chr17:8208657-8209223 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 124 |
| Conread position: | 2-514 |
| Cow position: | chr17:24780598-24781108 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 29 |
| Conread position: | 2-559 |
| Cow position: | chr17:2249031-2248478 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 29 |
| Conread position: | 2-569 |
| Cow position: | chr17:14217474-14216907 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 25 |
| Conread position: | 17-569 |
| Cow position: | chr17:4294941-4295460 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 110 |
| Conread position: | 17-570 |
| Cow position: | chr17:44853363-44852816 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 7 |
| Conread position: | 17-573 |
| Cow position: | chr17:42264091-42264621 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 109 |
| Conread position: | 18-561 |
| Cow position: | chr17:249487-250047 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 18-571 |
| Cow position: | chr17:2173440-2173996 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 229 |
| Conread position: | 18-573 |
| Cow position: | chr17:152898-152356 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 21 |
| Conread position: | 21-570 |
| Cow position: | chr17:6089592-6089044 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 10 |
| Conread position: | 27-282 |
| Cow position: | chr17:39933266-39933507 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 27-307 |
| Cow position: | chr17:13893957-13893686 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 27-308 |
| Cow position: | chr17:11782945-11783222 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 27-479 |
| Cow position: | chr17:22160490-22160941 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 210 |
| Conread position: | 27-571 |
| Cow position: | chr17:1383237-1382696 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 97 |
| Conread position: | 27-571 |
| Cow position: | chr17:4081227-4081746 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 100 |
| Conread position: | 27-571 |
| Cow position: | chr17:9653875-9653338 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 97 |
| Conread position: | 27-571 |
| Cow position: | chr17:15435367-15435909 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 22 |
| Conread position: | 27-571 |
| Cow position: | chr17:20666152-20665608 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 210 |
| Conread position: | 27-571 |
| Cow position: | chr17:43988112-43988651 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 95 |
| Conread position: | 27-573 |
| Cow position: | chr17:2587909-2588423 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 27-573 |
| Cow position: | chr17:16859983-16859448 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 27-573 |
| Cow position: | chr17:20401257-20401781 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 23 |
| Conread position: | 28-560 |
| Cow position: | chr17:22429908-22429387 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 28-570 |
| Cow position: | chr17:24633532-24634071 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 136 |
| Conread position: | 28-571 |
| Cow position: | chr17:35591792-35592332 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 15 |
| Conread position: | 28-573 |
| Cow position: | chr17:1658982-1658446 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 136 |
| Conread position: | 29-462 |
| Cow position: | chr17:15381582-15381988 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 281 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 103 |
| Conread position: | 29-571 |
| Cow position: | chr17:27345384-27345916 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 53 |
| Conread position: | 29-573 |
| Cow position: | chr17:3643260-3642716 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 209 |
| Conread position: | 33-342 |
| Cow position: | chr17:2146790-2147082 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 33-553 |
| Cow position: | chr17:2261690-2262206 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 204 |
| Conread position: | 33-570 |
| Cow position: | chr17:15143790-15143250 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 98 |
| Conread position: | 33-571 |
| Cow position: | chr17:228722-228190 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 182 |
| Conread position: | 33-571 |
| Cow position: | chr17:4059687-4060217 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 33-571 |
| Cow position: | chr17:14325913-14325395 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 89 |
| Conread position: | 33-571 |
| Cow position: | chr17:15157379-15156846 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 111 |
| Conread position: | 33-573 |
| Cow position: | chr17:6002429-6001898 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 10 |
| Conread position: | 33-573 |
| Cow position: | chr17:13857193-13856649 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 162 |
| Conread position: | 34-288 |
| Cow position: | chr17:2737959-2738208 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 34-322 |
| Cow position: | chr17:2579142-2579423 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 34-434 |
| Cow position: | chr17:15322412-15322788 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 90 |
| Conread position: | 34-571 |
| Cow position: | chr17:16889708-16890242 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 31 |
| Conread position: | 34-573 |
| Cow position: | chr17:1879673-1880214 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 119 |
| Conread position: | 34-573 |
| Cow position: | chr17:13929249-13929788 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 157 |
| Conread position: | 34-573 |
| Cow position: | chr17:14893738-14894273 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 34-573 |
| Cow position: | chr17:15849980-15850517 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 35 |
| Conread position: | 34-573 |
| Cow position: | chr17:18104099-18103565 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 204 |
| Conread position: | 34-573 |
| Cow position: | chr17:19269783-19269246 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 92 |
| Conread position: | 34-573 |
| Cow position: | chr17:25737245-25737783 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 81 |
| Conread position: | 35-357 |
| Cow position: | chr17:15370661-15370974 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 35-574 |
| Cow position: | chr17:2286959-2287507 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 214 |
| Conread position: | 36-570 |
| Cow position: | chr17:23857449-23856917 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 107 |
| Conread position: | 36-573 |
| Cow position: | chr17:11088138-11087604 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 88 |
| Conread position: | 37-571 |
| Cow position: | chr17:16418253-16417720 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 203, 77 |
| Conread position: | 39-566 |
| Cow position: | chr17:20183640-20183118 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 44-571 |
| Cow position: | chr17:23324851-23324336 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 64-571 |
| Cow position: | chr17:1946587-1947087 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 175 |
| Conread position: | 64-571 |
| Cow position: | chr17:18185913-18185417 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 173 |
| Conread position: | 78-459 |
| Cow position: | chr17:4671820-4672196 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 43, 36 |
| Conread position: | 95-426 |
| Cow position: | chr17:18301991-18301699 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 118-573 |
| Cow position: | chr17:6259510-6259964 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 73 |
| Conread position: | 127-571 |
| Cow position: | chr17:20088056-20087629 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 109 |
| Conread position: | 179-578 |
| Cow position: | chr17:2555850-2556247 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 183-571 |
| Cow position: | chr17:18027027-18026639 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 54 |
| Conread position: | 238-481 |
| Cow position: | chr17:12670666-12670427 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 131, 79 |
| Conread position: | 243-482 |
| Cow position: | chr17:18849484-18849726 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 254-573 |
| Cow position: | chr17:2579422-2579735 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 291-529 |
| Cow position: | chr17:39933491-39933731 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 293-571 |
| Cow position: | chr17:181201-181481 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 328-573 |
| Cow position: | chr17:40804689-40804937 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 376-550 |
| Cow position: | chr17:26205886-26205710 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 381-571 |
| Cow position: | chr17:15370976-15371165 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 102, 162 |
| Conread position: | 397-571 |
| Cow position: | chr17:1283763-1283587 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 424-573 |
| Cow position: | chr17:15323215-15323365 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 442-565 |
| Cow position: | chr17:36987682-36987559 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 9 |
Show alignments to all cow chromosomes.