Cow genome map
| Conread name: | Lng1-LNG010062C07 |
| Conread position: | 2-570 |
| Cow position: | chr18:47741776-47742343 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 29 |
| Conread position: | 2-571 |
| Cow position: | chr18:16078461-16079043 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 29 |
| Conread position: | 4-573 |
| Cow position: | chr18:37599768-37599214 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 7 |
| Conread position: | 17-308 |
| Cow position: | chr18:45958466-45958742 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 17-477 |
| Cow position: | chr18:43200840-43201285 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 17-565 |
| Cow position: | chr18:2019914-2019365 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 110 |
| Conread position: | 17-571 |
| Cow position: | chr18:23944600-23944049 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 21-255 |
| Cow position: | chr18:37585886-37585658 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 25-571 |
| Cow position: | chr18:1520908-1521471 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 26-568 |
| Cow position: | chr18:44601324-44601842 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 56 |
| Conread position: | 26-571 |
| Cow position: | chr18:6869474-6868933 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 94 |
| Conread position: | 27-322 |
| Cow position: | chr18:29763239-29763528 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 27-405 |
| Cow position: | chr18:44621541-44621917 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 210 |
| Conread position: | 27-571 |
| Cow position: | chr18:19352169-19352711 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 6 |
| Conread position: | 27-571 |
| Cow position: | chr18:33953785-33953249 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 45 |
| Conread position: | 27-571 |
| Cow position: | chr18:55089143-55088599 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 208 |
| Conread position: | 28-515 |
| Cow position: | chr18:18897288-18897762 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 69 |
| Conread position: | 28-570 |
| Cow position: | chr18:22602270-22602812 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 209 |
| Conread position: | 28-571 |
| Cow position: | chr18:33268622-33269151 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 213 |
| Conread position: | 29-571 |
| Cow position: | chr18:48221662-48222204 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 34 |
| Conread position: | 29-573 |
| Cow position: | chr18:32293559-32294086 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 101 |
| Conread position: | 33-308 |
| Cow position: | chr18:51660205-51660476 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 33-463 |
| Cow position: | chr18:29070050-29070461 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 57 |
| Conread position: | 33-471 |
| Cow position: | chr18:16660216-16659793 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 175 |
| Conread position: | 33-529 |
| Cow position: | chr18:54024567-54024077 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 25 |
| Conread position: | 33-565 |
| Cow position: | chr18:43147136-43146606 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 197 |
| Conread position: | 33-569 |
| Cow position: | chr18:54172055-54171540 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 193 |
| Conread position: | 33-571 |
| Cow position: | chr18:33358656-33359191 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 89 |
| Conread position: | 33-571 |
| Cow position: | chr18:39748370-39748903 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 93 |
| Conread position: | 33-571 |
| Cow position: | chr18:47719781-47719258 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 33-571 |
| Cow position: | chr18:51257771-51258309 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 167 |
| Conread position: | 33-571 |
| Cow position: | chr18:51310371-51310909 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 134 |
| Conread position: | 33-574 |
| Cow position: | chr18:35335274-35335808 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 208 |
| Conread position: | 34-269 |
| Cow position: | chr18:25349828-25350059 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 169, 157 |
| Conread position: | 34-290 |
| Cow position: | chr18:32651785-32652036 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 81, 119 |
| Conread position: | 34-366 |
| Cow position: | chr18:27986818-27987146 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 93 |
| Conread position: | 34-571 |
| Cow position: | chr18:16863864-16864381 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 340 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 34-573 |
| Cow position: | chr18:14415768-14416303 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 90 |
| Conread position: | 34-573 |
| Cow position: | chr18:16176817-16176290 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 122 |
| Conread position: | 34-573 |
| Cow position: | chr18:23797440-23797975 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 131 |
| Conread position: | 34-573 |
| Cow position: | chr18:27838514-27837989 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 208 |
| Conread position: | 34-573 |
| Cow position: | chr18:28974109-28973575 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 31 |
| Conread position: | 34-573 |
| Cow position: | chr18:36508122-36508660 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 34-573 |
| Cow position: | chr18:37504854-37505391 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 90 |
| Conread position: | 34-573 |
| Cow position: | chr18:40478172-40478710 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 212 |
| Conread position: | 34-573 |
| Cow position: | chr18:41841036-41840497 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 204 |
| Conread position: | 34-573 |
| Cow position: | chr18:51480629-51481167 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 90 |
| Conread position: | 36-569 |
| Cow position: | chr18:16533776-16534302 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 17 |
| Conread position: | 36-569 |
| Cow position: | chr18:33335662-33336186 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 88 |
| Conread position: | 37-571 |
| Cow position: | chr18:11275307-11274780 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 13 |
| Conread position: | 40-447 |
| Cow position: | chr18:9186967-9186568 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 10 |
| Conread position: | 64-571 |
| Cow position: | chr18:53785660-53786163 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 63 |
| Conread position: | 67-570 |
| Cow position: | chr18:51689449-51689949 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 68 |
| Conread position: | 67-573 |
| Cow position: | chr18:46878165-46877681 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 98, 60 |
| Conread position: | 96-295 |
| Cow position: | chr18:22869605-22869801 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 142 |
| Conread position: | 98-570 |
| Cow position: | chr18:29236671-29237133 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 81 |
| Conread position: | 104-571 |
| Cow position: | chr18:2887164-2886696 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 117-418 |
| Cow position: | chr18:35288402-35288709 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 76 |
| Conread position: | 120-571 |
| Cow position: | chr18:51341561-51342012 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 117 |
| Conread position: | 121-478 |
| Cow position: | chr18:29946068-29946415 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 147-573 |
| Cow position: | chr18:36258452-36258028 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 222, 17 |
| Conread position: | 191-573 |
| Cow position: | chr18:14130334-14130712 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 202-573 |
| Cow position: | chr18:52650888-52651247 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 238-562 |
| Cow position: | chr18:114383-114706 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 264-571 |
| Cow position: | chr18:24040718-24040406 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 267-514 |
| Cow position: | chr18:25350682-25350933 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 267-571 |
| Cow position: | chr18:51463057-51462753 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 113 |
| Conread position: | 269-585 |
| Cow position: | chr18:45958740-45959056 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 170, 181 |
| Conread position: | 272-570 |
| Cow position: | chr18:19539557-19539260 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 48, 259 |
| Conread position: | 281-513 |
| Cow position: | chr18:54269617-54269860 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 56, 98 |
| Conread position: | 285-527 |
| Cow position: | chr18:32652256-32652500 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 319-573 |
| Cow position: | chr18:16843264-16843013 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 67 |
| Conread position: | 324-549 |
| Cow position: | chr18:18089396-18089172 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 376-570 |
| Cow position: | chr18:27987189-27987389 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 395-571 |
| Cow position: | chr18:17992273-17992095 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 431-571 |
| Cow position: | chr18:56462719-56462577 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 14, 102 |
Show alignments to all cow chromosomes.