Cow genome map
| Conread name: | Lng1-LNG010062C07 |
| Conread position: | 1-569 |
| Cow position: | chr21:25992781-25992214 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 9 |
| Conread position: | 3-571 |
| Cow position: | chr21:11505427-11506002 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 8 |
| Conread position: | 5-571 |
| Cow position: | chr21:2510497-2511057 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 6 |
| Conread position: | 13-571 |
| Cow position: | chr21:2541566-2541007 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 15 |
| Conread position: | 17-418 |
| Cow position: | chr21:2716824-2716431 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 18-563 |
| Cow position: | chr21:47947962-47948506 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 221 |
| Conread position: | 23-571 |
| Cow position: | chr21:7267680-7267131 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 26-571 |
| Cow position: | chr21:13124135-13123600 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 27-240 |
| Cow position: | chr21:28529681-28529469 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 27-368 |
| Cow position: | chr21:27708624-27708964 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 210 |
| Conread position: | 27-403 |
| Cow position: | chr21:26819151-26818785 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 13 |
| Conread position: | 27-501 |
| Cow position: | chr21:33755164-33755636 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 27-548 |
| Cow position: | chr21:21947939-21947425 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 107 |
| Conread position: | 27-570 |
| Cow position: | chr21:11453791-11453251 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 97 |
| Conread position: | 27-571 |
| Cow position: | chr21:2476648-2476135 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 202 |
| Conread position: | 27-571 |
| Cow position: | chr21:4090513-4091055 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 191 |
| Conread position: | 27-571 |
| Cow position: | chr21:6699697-6699177 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 358 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 52, 118 |
| Conread position: | 27-571 |
| Cow position: | chr21:12056135-12055595 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 97 |
| Conread position: | 27-573 |
| Cow position: | chr21:216171-216697 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 72 |
| Conread position: | 27-573 |
| Cow position: | chr21:36714493-36715036 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 28-571 |
| Cow position: | chr21:39424926-39425469 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 211 |
| Conread position: | 30-571 |
| Cow position: | chr21:2416105-2416624 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 30 |
| Conread position: | 30-573 |
| Cow position: | chr21:31559789-31559248 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 33-406 |
| Cow position: | chr21:3615162-3615532 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 43 |
| Conread position: | 33-443 |
| Cow position: | chr21:34259344-34258954 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 88 |
| Conread position: | 33-542 |
| Cow position: | chr21:47939347-47939848 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 178 |
| Conread position: | 33-548 |
| Cow position: | chr21:3426356-3426868 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 94 |
| Conread position: | 33-562 |
| Cow position: | chr21:9891479-9892000 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 98 |
| Conread position: | 33-570 |
| Cow position: | chr21:1292303-1291786 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 17 |
| Conread position: | 33-571 |
| Cow position: | chr21:2530257-2529722 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 17 |
| Conread position: | 33-571 |
| Cow position: | chr21:2674769-2674206 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 190 |
| Conread position: | 33-571 |
| Cow position: | chr21:4076716-4077243 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 91 |
| Conread position: | 33-571 |
| Cow position: | chr21:26638595-26638059 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 190 |
| Conread position: | 33-571 |
| Cow position: | chr21:34292887-34293421 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 100 |
| Conread position: | 33-571 |
| Cow position: | chr21:37044783-37045316 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 20 |
| Conread position: | 33-571 |
| Cow position: | chr21:46915453-46915994 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 34-217 |
| Cow position: | chr21:40271944-40271768 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 34-343 |
| Cow position: | chr21:1190911-1191218 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 34-571 |
| Cow position: | chr21:358885-359439 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 180 |
| Conread position: | 34-573 |
| Cow position: | chr21:145789-146330 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 84 |
| Conread position: | 34-573 |
| Cow position: | chr21:2883865-2883340 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 90 |
| Conread position: | 34-573 |
| Cow position: | chr21:3778637-3779174 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 122 |
| Conread position: | 34-573 |
| Cow position: | chr21:10849949-10850487 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 204 |
| Conread position: | 34-573 |
| Cow position: | chr21:30561671-30562210 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 204 |
| Conread position: | 34-573 |
| Cow position: | chr21:30600046-30599518 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 90 |
| Conread position: | 34-573 |
| Cow position: | chr21:48115977-48116509 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 90 |
| Conread position: | 35-571 |
| Cow position: | chr21:4183408-4183923 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 88 |
| Conread position: | 35-574 |
| Cow position: | chr21:20744879-20744360 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 92 |
| Conread position: | 36-432 |
| Cow position: | chr21:33251263-33251657 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 206 |
| Conread position: | 36-526 |
| Cow position: | chr21:4222816-4222333 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 199 |
| Conread position: | 36-573 |
| Cow position: | chr21:10566548-10567076 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 89 |
| Conread position: | 37-461 |
| Cow position: | chr21:2769592-2769166 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 208 |
| Conread position: | 44-571 |
| Cow position: | chr21:35596250-35596772 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 32 |
| Conread position: | 64-571 |
| Cow position: | chr21:4456729-4457232 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 19 |
| Conread position: | 86-571 |
| Cow position: | chr21:2789070-2788587 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 146 |
| Conread position: | 95-569 |
| Cow position: | chr21:26823297-26822830 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 25 |
| Conread position: | 109-554 |
| Cow position: | chr21:993072-992640 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 238, 82 |
| Conread position: | 121-571 |
| Cow position: | chr21:23811832-23812281 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 121 |
| Conread position: | 127-572 |
| Cow position: | chr21:4590028-4589584 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 102 |
| Conread position: | 127-574 |
| Cow position: | chr21:21914247-21914693 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 114 |
| Conread position: | 129-513 |
| Cow position: | chr21:8678397-8678013 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 156-573 |
| Cow position: | chr21:27282378-27282793 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 290 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 157-570 |
| Cow position: | chr21:6339558-6339971 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 80 |
| Conread position: | 158-570 |
| Cow position: | chr21:3194389-3194784 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 192-474 |
| Cow position: | chr21:18692750-18693020 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 238-510 |
| Cow position: | chr21:34054672-34054391 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 82, 92 |
| Conread position: | 238-571 |
| Cow position: | chr21:40271608-40271271 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 246-559 |
| Cow position: | chr21:21926625-21926317 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 264-571 |
| Cow position: | chr21:3798276-3797965 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 293-570 |
| Cow position: | chr21:2502018-2502295 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 301-573 |
| Cow position: | chr21:1191295-1191571 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 350-570 |
| Cow position: | chr21:26650224-26650446 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 363-571 |
| Cow position: | chr21:18820232-18820024 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 76, 150 |
| Conread position: | 376-573 |
| Cow position: | chr21:35143977-35144164 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 77, 98 |
Show alignments to all cow chromosomes.