Cow genome map

Conread name: Lng1-LNG010062C07

Conread position: 1-457
Cow position: chr22:293500-293042 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 125

Conread position: 2-514
Cow position: chr22:24949495-24950005 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 29

Conread position: 2-570
Cow position: chr22:44489556-44490119 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 29

Conread position: 2-571
Cow position: chr22:35672690-35672123 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 29

Conread position: 17-552
Cow position: chr22:32485655-32485139 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 111

Conread position: 17-571
Cow position: chr22:39882494-39881943 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 81

Conread position: 20-570
Cow position: chr22:34598360-34598893 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 56

Conread position: 27-272
Cow position: chr22:18476073-18475836 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 230, 97

Conread position: 27-357
Cow position: chr22:302293-301972 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 219
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 238, 120

Conread position: 27-381
Cow position: chr22:6984944-6985296 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 210

Conread position: 27-447
Cow position: chr22:37265144-37265562 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 104

Conread position: 27-570
Cow position: chr22:46853041-46853574 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 36

Conread position: 27-571
Cow position: chr22:1270809-1270302 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 512, 125

Conread position: 27-571
Cow position: chr22:3278664-3278123 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 210

Conread position: 27-571
Cow position: chr22:5233611-5233072 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 36

Conread position: 27-571
Cow position: chr22:10546340-10546878 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 97

Conread position: 27-571
Cow position: chr22:10910162-10909600 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 67

Conread position: 27-571
Cow position: chr22:16200184-16200707 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 49

Conread position: 27-571
Cow position: chr22:27310087-27309540 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 213

Conread position: 27-573
Cow position: chr22:7277212-7277753 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 211

Conread position: 27-573
Cow position: chr22:15957004-15956469 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 49

Conread position: 28-571
Cow position: chr22:1878482-1879026 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 209

Conread position: 28-573
Cow position: chr22:32348277-32347755 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 84

Conread position: 29-229
Cow position: chr22:37067220-37067024 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 98

Conread position: 29-571
Cow position: chr22:15851033-15851552 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 57

Conread position: 29-571
Cow position: chr22:36736465-36736992 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 20

Conread position: 30-571
Cow position: chr22:6503978-6503444 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 213

Conread position: 31-553
Cow position: chr22:1321309-1321807 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 31-573
Cow position: chr22:44353254-44352728 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 187

Conread position: 33-526
Cow position: chr22:36267072-36267551 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 92

Conread position: 33-560
Cow position: chr22:46636000-46635492 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 31

Conread position: 33-569
Cow position: chr22:158219-157675 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 216

Conread position: 33-571
Cow position: chr22:118120-117609 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 94

Conread position: 33-571
Cow position: chr22:327453-326937 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 69

Conread position: 33-571
Cow position: chr22:693328-693859 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 10

Conread position: 33-571
Cow position: chr22:5307813-5308336 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 143

Conread position: 33-571
Cow position: chr22:5933284-5932767 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 91

Conread position: 33-571
Cow position: chr22:41419988-41419461 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 89

Conread position: 33-571
Cow position: chr22:44369922-44369393 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 91

Conread position: 33-573
Cow position: chr22:871154-870631 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 30

Conread position: 33-573
Cow position: chr22:1319091-1319632 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 205

Conread position: 33-573
Cow position: chr22:33350865-33351416 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 118

Conread position: 33-574
Cow position: chr22:8136496-8135965 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 19

Conread position: 34-220
Cow position: chr22:46585615-46585429 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 34-565
Cow position: chr22:31313041-31313568 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 90

Conread position: 34-571
Cow position: chr22:3307025-3306502 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 23

Conread position: 34-571
Cow position: chr22:37131348-37131866 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 71

Conread position: 34-573
Cow position: chr22:561003-560470 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 155

Conread position: 34-573
Cow position: chr22:17329043-17328504 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 202

Conread position: 34-573
Cow position: chr22:18816685-18816150 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 42

Conread position: 34-573
Cow position: chr22:19144001-19143464 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 10

Conread position: 34-573
Cow position: chr22:21589029-21589559 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 157

Conread position: 34-573
Cow position: chr22:31335336-31334803 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 107

Conread position: 34-573
Cow position: chr22:34168028-34168566 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 10

Conread position: 34-573
Cow position: chr22:36861834-36861295 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 208

Conread position: 34-573
Cow position: chr22:39469821-39469288 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 90

Conread position: 34-573
Cow position: chr22:42990868-42991407 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 204

Conread position: 34-573
Cow position: chr22:44933676-44934214 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 207

Conread position: 36-441
Cow position: chr22:1293795-1293395 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 46

Conread position: 42-573
Cow position: chr22:44609320-44609827 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 14

Conread position: 44-571
Cow position: chr22:11030666-11031193 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 109

Conread position: 47-478
Cow position: chr22:11782821-11782389 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 293
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 280, 19

Conread position: 50-306
Cow position: chr22:9658030-9658286 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 168, 87

Conread position: 61-570
Cow position: chr22:36183482-36183988 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 34

Conread position: 64-571
Cow position: chr22:27283776-27284264 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 9

Conread position: 77-478
Cow position: chr22:27386692-27386292 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 114

Conread position: 78-571
Cow position: chr22:13675417-13674941 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 317
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 103, 65

Conread position: 80-526
Cow position: chr22:36274548-36274996 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 160

Conread position: 99-571
Cow position: chr22:536862-537334 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 138

Conread position: 109-570
Cow position: chr22:13917278-13917735 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 17

Conread position: 117-437
Cow position: chr22:12732065-12731754 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 222
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 152, 125

Conread position: 117-573
Cow position: chr22:15314169-15313717 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 112

Conread position: 120-573
Cow position: chr22:298552-298106 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 297
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 9, 113

Conread position: 125-573
Cow position: chr22:525886-525458 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 6

Conread position: 147-478
Cow position: chr22:34606872-34607195 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 94, 0

Conread position: 168-569
Cow position: chr22:36533907-36533512 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 61

Conread position: 174-571
Cow position: chr22:46547828-46547431 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 63

Conread position: 179-571
Cow position: chr22:44475096-44475467 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 140, 56

Conread position: 191-573
Cow position: chr22:20240988-20240607 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 46

Conread position: 209-573
Cow position: chr22:8874865-8875222 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 255
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 106, 32

Conread position: 238-571
Cow position: chr22:42771371-42771688 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 232
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 210, 105

Conread position: 238-571
Cow position: chr22:46581689-46581355 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 19, 45

Conread position: 238-573
Cow position: chr22:1048307-1048636 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 27

Conread position: 242-418
Cow position: chr22:13772878-13773052 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 23

Conread position: 242-479
Cow position: chr22:45975877-45976109 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 23, 17

Conread position: 245-571
Cow position: chr22:6020565-6020895 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 273-569
Cow position: chr22:44396382-44396681 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 72

Conread position: 281-573
Cow position: chr22:309717-310012 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 41, 253

Conread position: 291-570
Cow position: chr22:35943260-35942978 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 10, 79

Conread position: 298-573
Cow position: chr22:41238131-41238407 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 192
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 27

Conread position: 301-463
Cow position: chr22:1860846-1860687 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 138, 10

Conread position: 332-522
Cow position: chr22:37073221-37073030 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 34, 85

Conread position: 375-519
Cow position: chr22:47640942-47641086 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 20

Conread position: 376-571
Cow position: chr22:18027316-18027512 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 68, 55

Conread position: 377-549
Cow position: chr22:1283613-1283439 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 71, 0

Conread position: 392-571
Cow position: chr22:23853383-23853563 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 114

Conread position: 396-571
Cow position: chr22:38938027-38937850 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 52, 137

Conread position: 408-575
Cow position: chr22:45879542-45879372 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 0

Show alignments to all cow chromosomes.