Cow genome map
Conread name: | Lng1-LNG010062C07 |
Conread position: | 2-571 |
Cow position: | chr24:6433992-6434559 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 317, 29 |
Conread position: | 4-468 |
Cow position: | chr24:38635493-38635969 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 76 |
Conread position: | 4-571 |
Cow position: | chr24:16649548-16648998 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 256, 237 |
Conread position: | 5-473 |
Cow position: | chr24:39678189-39678629 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 175, 38 |
Conread position: | 11-411 |
Cow position: | chr24:6645178-6645570 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 309, 20 |
Conread position: | 13-571 |
Cow position: | chr24:36560317-36559768 (view UCSC Genome Browser custom track) |
Alignm length: | 561 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 431, 36 |
Conread position: | 17-353 |
Cow position: | chr24:12288961-12288630 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 113 |
Conread position: | 17-561 |
Cow position: | chr24:12797993-12797459 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 422, 26 |
Conread position: | 17-571 |
Cow position: | chr24:12236820-12237373 (view UCSC Genome Browser custom track) |
Alignm length: | 561 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 109 |
Conread position: | 19-573 |
Cow position: | chr24:35841847-35841302 (view UCSC Genome Browser custom track) |
Alignm length: | 560 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 174 |
Conread position: | 21-413 |
Cow position: | chr24:2635890-2636276 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 298, 10 |
Conread position: | 21-570 |
Cow position: | chr24:44017316-44017864 (view UCSC Genome Browser custom track) |
Alignm length: | 554 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 298, 10 |
Conread position: | 22-470 |
Cow position: | chr24:12224709-12224245 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 21 |
Conread position: | 24-358 |
Cow position: | chr24:584423-584101 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 232 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 161, 26 |
Conread position: | 26-571 |
Cow position: | chr24:8029925-8030470 (view UCSC Genome Browser custom track) |
Alignm length: | 550 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 294, 211 |
Conread position: | 27-571 |
Cow position: | chr24:6025321-6024779 (view UCSC Genome Browser custom track) |
Alignm length: | 551 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 211 |
Conread position: | 27-571 |
Cow position: | chr24:6083792-6084336 (view UCSC Genome Browser custom track) |
Alignm length: | 550 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 292, 210 |
Conread position: | 27-571 |
Cow position: | chr24:9188956-9188413 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 293, 210 |
Conread position: | 27-571 |
Cow position: | chr24:22792952-22793491 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 293, 97 |
Conread position: | 27-571 |
Cow position: | chr24:33739567-33739021 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 257, 49 |
Conread position: | 27-571 |
Cow position: | chr24:36707635-36708165 (view UCSC Genome Browser custom track) |
Alignm length: | 550 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 259, 44 |
Conread position: | 27-573 |
Cow position: | chr24:6537337-6537858 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 418, 47 |
Conread position: | 27-573 |
Cow position: | chr24:12485542-12484996 (view UCSC Genome Browser custom track) |
Alignm length: | 552 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 293, 210 |
Conread position: | 27-573 |
Cow position: | chr24:32331120-32331636 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 73 |
Conread position: | 28-431 |
Cow position: | chr24:36296944-36297345 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 271 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 23, 128 |
Conread position: | 28-571 |
Cow position: | chr24:15392527-15392021 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 321, 98 |
Conread position: | 29-571 |
Cow position: | chr24:35838854-35838301 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 215 |
Conread position: | 33-419 |
Cow position: | chr24:7060883-7061265 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 286, 184 |
Conread position: | 33-427 |
Cow position: | chr24:17187327-17187713 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 180 |
Conread position: | 33-445 |
Cow position: | chr24:16140871-16141265 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 275 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 84, 10 |
Conread position: | 33-447 |
Cow position: | chr24:14390940-14390542 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 0 |
Conread position: | 33-471 |
Cow position: | chr24:12161660-12162094 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 71 |
Conread position: | 33-571 |
Cow position: | chr24:6145141-6145687 (view UCSC Genome Browser custom track) |
Alignm length: | 552 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 277, 210 |
Conread position: | 33-571 |
Cow position: | chr24:6335476-6336001 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 41 |
Conread position: | 33-571 |
Cow position: | chr24:13187969-13188492 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 91 |
Conread position: | 33-571 |
Cow position: | chr24:37321818-37321295 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 346 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 129, 49 |
Conread position: | 34-357 |
Cow position: | chr24:13531749-13531433 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 16 |
Conread position: | 34-498 |
Cow position: | chr24:12131699-12131241 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 16 |
Conread position: | 34-569 |
Cow position: | chr24:19833166-19833702 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 285, 90 |
Conread position: | 34-573 |
Cow position: | chr24:12085982-12086519 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 99 |
Conread position: | 34-573 |
Cow position: | chr24:14384829-14384294 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 231, 103 |
Conread position: | 35-570 |
Cow position: | chr24:33933151-33933684 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 285, 117 |
Conread position: | 35-573 |
Cow position: | chr24:1447353-1447875 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 318, 88 |
Conread position: | 45-571 |
Cow position: | chr24:16084867-16084340 (view UCSC Genome Browser custom track) |
Alignm length: | 532 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 274, 192 |
Conread position: | 51-573 |
Cow position: | chr24:4415724-4415208 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 113 |
Conread position: | 86-568 |
Cow position: | chr24:14584929-14585393 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 362, 12 |
Conread position: | 104-542 |
Cow position: | chr24:22951988-22952426 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 87 |
Conread position: | 104-573 |
Cow position: | chr24:148763-148298 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 88 |
Conread position: | 106-570 |
Cow position: | chr24:9092419-9091967 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 203, 132 |
Conread position: | 109-573 |
Cow position: | chr24:40548731-40549195 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 132 |
Conread position: | 117-573 |
Cow position: | chr24:12335927-12335454 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 110 |
Conread position: | 167-562 |
Cow position: | chr24:37216919-37217309 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 76 |
Conread position: | 167-573 |
Cow position: | chr24:40654306-40654705 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 282 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 13, 26 |
Conread position: | 168-383 |
Cow position: | chr24:35987428-35987228 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 155 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 151, 61 |
Conread position: | 244-573 |
Cow position: | chr24:17696979-17696657 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 17 |
Conread position: | 295-542 |
Cow position: | chr24:13524145-13524394 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 167 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 9, 113 |
Conread position: | 308-573 |
Cow position: | chr24:29187337-29187604 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 0 |
Conread position: | 319-572 |
Cow position: | chr24:1438118-1437868 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 175 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 221, 24 |
Conread position: | 379-571 |
Cow position: | chr24:6645827-6646022 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 138 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 404-570 |
Cow position: | chr24:7061539-7061707 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 121 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.