Cow genome map
| Conread name: | Lng1-LNG010062C07 |
| Conread position: | 2-571 |
| Cow position: | chr28:6780617-6780056 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 48 |
| Conread position: | 17-335 |
| Cow position: | chr28:22827781-22828088 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 26 |
| Conread position: | 17-573 |
| Cow position: | chr28:7901076-7901641 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 19-240 |
| Cow position: | chr28:5796545-5796762 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 107 |
| Conread position: | 26-573 |
| Cow position: | chr28:8378301-8378848 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 14 |
| Conread position: | 27-398 |
| Cow position: | chr28:32331667-32331304 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 97 |
| Conread position: | 27-457 |
| Cow position: | chr28:15950715-15951142 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 216 |
| Conread position: | 27-571 |
| Cow position: | chr28:13441143-13440599 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 207 |
| Conread position: | 27-571 |
| Cow position: | chr28:14750282-14750824 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 210 |
| Conread position: | 28-573 |
| Cow position: | chr28:34648672-34649223 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 86 |
| Conread position: | 31-571 |
| Cow position: | chr28:9953873-9954410 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 175 |
| Conread position: | 33-333 |
| Cow position: | chr28:17330780-17330489 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 237, 72 |
| Conread position: | 33-558 |
| Cow position: | chr28:15920726-15920200 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 204 |
| Conread position: | 33-570 |
| Cow position: | chr28:5812449-5812965 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 33-570 |
| Cow position: | chr28:21358760-21359278 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 91 |
| Conread position: | 33-571 |
| Cow position: | chr28:1387650-1387123 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 53 |
| Conread position: | 33-571 |
| Cow position: | chr28:1952872-1953407 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 33-571 |
| Cow position: | chr28:2591661-2592192 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 17 |
| Conread position: | 33-571 |
| Cow position: | chr28:9155544-9155008 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 33-571 |
| Cow position: | chr28:24587173-24587712 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 204 |
| Conread position: | 34-331 |
| Cow position: | chr28:29819311-29819604 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 285, 195 |
| Conread position: | 34-493 |
| Cow position: | chr28:26426531-26426083 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 34-551 |
| Cow position: | chr28:21325530-21326048 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 34-571 |
| Cow position: | chr28:8721701-8721172 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 90 |
| Conread position: | 34-573 |
| Cow position: | chr28:782139-782674 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 127 |
| Conread position: | 34-573 |
| Cow position: | chr28:1815126-1814588 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 76 |
| Conread position: | 34-573 |
| Cow position: | chr28:2083345-2083875 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 195 |
| Conread position: | 34-573 |
| Cow position: | chr28:5565602-5566133 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 209 |
| Conread position: | 34-573 |
| Cow position: | chr28:7001729-7002269 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 208 |
| Conread position: | 34-573 |
| Cow position: | chr28:12150063-12150583 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 90 |
| Conread position: | 34-573 |
| Cow position: | chr28:14705930-14705392 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 34-573 |
| Cow position: | chr28:17388222-17388761 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 204 |
| Conread position: | 34-573 |
| Cow position: | chr28:18520720-18520180 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 209 |
| Conread position: | 34-573 |
| Cow position: | chr28:22261410-22260871 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 34-573 |
| Cow position: | chr28:32792638-32792101 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 184 |
| Conread position: | 34-574 |
| Cow position: | chr28:10582244-10581706 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 118 |
| Conread position: | 34-574 |
| Cow position: | chr28:17667771-17667233 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 135 |
| Conread position: | 35-400 |
| Cow position: | chr28:34324569-34324917 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 128 |
| Conread position: | 35-464 |
| Cow position: | chr28:7816976-7817373 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 47 |
| Conread position: | 35-570 |
| Cow position: | chr28:10619359-10618838 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 87 |
| Conread position: | 35-573 |
| Cow position: | chr28:3193050-3192512 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 204 |
| Conread position: | 35-573 |
| Cow position: | chr28:13459713-13460249 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 194 |
| Conread position: | 37-571 |
| Cow position: | chr28:7821998-7822535 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 203 |
| Conread position: | 44-430 |
| Cow position: | chr28:10591618-10591252 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 280, 80 |
| Conread position: | 45-573 |
| Cow position: | chr28:5378228-5378741 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 318 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 185, 100 |
| Conread position: | 47-455 |
| Cow position: | chr28:15585148-15585542 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 400, 88 |
| Conread position: | 50-557 |
| Cow position: | chr28:18102169-18101682 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 77 |
| Conread position: | 64-413 |
| Cow position: | chr28:24652062-24652398 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 65-287 |
| Cow position: | chr28:5752105-5751886 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 145, 178 |
| Conread position: | 65-573 |
| Cow position: | chr28:1504627-1505131 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 140 |
| Conread position: | 65-573 |
| Cow position: | chr28:15378220-15377713 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 177 |
| Conread position: | 66-536 |
| Cow position: | chr28:2989909-2989475 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 74 |
| Conread position: | 90-564 |
| Cow position: | chr28:24667378-24667850 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 47 |
| Conread position: | 104-572 |
| Cow position: | chr28:33252131-33252590 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 20 |
| Conread position: | 117-573 |
| Cow position: | chr28:5114976-5114532 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 125 |
| Conread position: | 117-573 |
| Cow position: | chr28:12410386-12409946 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 74 |
| Conread position: | 126-428 |
| Cow position: | chr28:6657475-6657173 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 31, 98 |
| Conread position: | 131-571 |
| Cow position: | chr28:22065899-22065467 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 114 |
| Conread position: | 139-573 |
| Cow position: | chr28:7740340-7740760 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 154-571 |
| Cow position: | chr28:7790437-7790007 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 173-571 |
| Cow position: | chr28:9137169-9136774 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 56 |
| Conread position: | 189-385 |
| Cow position: | chr28:22233793-22233600 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 130, 52 |
| Conread position: | 191-559 |
| Cow position: | chr28:2724993-2724625 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 238-571 |
| Cow position: | chr28:4380898-4380567 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 86 |
| Conread position: | 243-573 |
| Cow position: | chr28:12233051-12232722 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 280-573 |
| Cow position: | chr28:1167899-1167602 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 280-573 |
| Cow position: | chr28:5751724-5751426 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 65 |
| Conread position: | 280-573 |
| Cow position: | chr28:34593961-34594258 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 65 |
| Conread position: | 306-573 |
| Cow position: | chr28:29819744-29820013 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 326-573 |
| Cow position: | chr28:2846142-2845895 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 125, 101 |
| Conread position: | 335-573 |
| Cow position: | chr28:5797472-5797711 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 104, 70 |
| Conread position: | 339-571 |
| Cow position: | chr28:1931941-1931707 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 343-570 |
| Cow position: | chr28:17324303-17324068 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 179 |
| Conread position: | 377-571 |
| Cow position: | chr28:485481-485285 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 384-568 |
| Cow position: | chr28:22828104-22828290 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 420-571 |
| Cow position: | chr28:13490275-13490428 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 424-573 |
| Cow position: | chr28:5937609-5937756 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 81 |
Show alignments to all cow chromosomes.