Cow genome map

Conread name: Lng1-LNG010062C07

Conread position: 1-573
Cow position: chr29:1714927-1715486 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 42

Conread position: 2-479
Cow position: chr29:16109404-16109877 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 200

Conread position: 2-571
Cow position: chr29:35296553-35297117 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 93

Conread position: 4-565
Cow position: chr29:104256-104804 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 105

Conread position: 4-569
Cow position: chr29:30811221-30811763 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 64

Conread position: 4-570
Cow position: chr29:15950506-15949949 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 102

Conread position: 7-571
Cow position: chr29:610931-610369 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 128

Conread position: 27-308
Cow position: chr29:31121508-31121782 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 56, 0

Conread position: 27-446
Cow position: chr29:28060966-28060548 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 210

Conread position: 27-479
Cow position: chr29:15969448-15969001 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 134

Conread position: 27-501
Cow position: chr29:13853320-13852853 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 64

Conread position: 27-535
Cow position: chr29:32315740-32316246 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 210

Conread position: 27-571
Cow position: chr29:15895148-15894607 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 97

Conread position: 28-571
Cow position: chr29:27250634-27250099 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 213

Conread position: 31-571
Cow position: chr29:21543672-21543126 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 217

Conread position: 31-573
Cow position: chr29:10824257-10823724 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 216

Conread position: 32-353
Cow position: chr29:34609243-34608934 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 74

Conread position: 32-573
Cow position: chr29:2099549-2100090 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 206

Conread position: 33-419
Cow position: chr29:31180829-31181213 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 204

Conread position: 33-434
Cow position: chr29:16176060-16175666 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 251
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 135

Conread position: 33-568
Cow position: chr29:10848410-10847852 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 154

Conread position: 33-571
Cow position: chr29:2750677-2750178 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 506, 29

Conread position: 33-571
Cow position: chr29:7840501-7841039 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 98

Conread position: 33-571
Cow position: chr29:11048989-11049521 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 92

Conread position: 33-571
Cow position: chr29:16769838-16770366 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 172

Conread position: 33-571
Cow position: chr29:27041054-27040529 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 93

Conread position: 33-571
Cow position: chr29:43366290-43365759 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 24

Conread position: 34-435
Cow position: chr29:21246275-21246675 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 209

Conread position: 34-572
Cow position: chr29:10648538-10648007 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 90

Conread position: 34-573
Cow position: chr29:48769-48235 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 195

Conread position: 34-573
Cow position: chr29:2689612-2690145 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 90

Conread position: 34-573
Cow position: chr29:2841658-2841128 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 90

Conread position: 34-573
Cow position: chr29:6266785-6266256 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 35

Conread position: 34-573
Cow position: chr29:7431509-7430974 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 208

Conread position: 34-573
Cow position: chr29:19623537-19623002 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 90

Conread position: 34-573
Cow position: chr29:19652815-19653353 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 204

Conread position: 34-573
Cow position: chr29:20250866-20251404 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 157

Conread position: 34-573
Cow position: chr29:23975539-23976085 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 213

Conread position: 34-573
Cow position: chr29:25932837-25932299 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 176

Conread position: 34-573
Cow position: chr29:26165115-26164577 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 10

Conread position: 34-573
Cow position: chr29:38226701-38227225 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 70

Conread position: 34-573
Cow position: chr29:39079999-39079467 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 204

Conread position: 34-573
Cow position: chr29:40503272-40502737 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 157

Conread position: 34-573
Cow position: chr29:43322266-43322800 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 207

Conread position: 34-573
Cow position: chr29:45459426-45459961 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 90

Conread position: 34-574
Cow position: chr29:34800099-34799562 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 42

Conread position: 34-589
Cow position: chr29:19893474-19894035 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 364
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 168, 22

Conread position: 35-570
Cow position: chr29:5957311-5957846 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 100

Conread position: 35-573
Cow position: chr29:32539518-32540055 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 208

Conread position: 37-335
Cow position: chr29:32640497-32640784 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 16, 46

Conread position: 45-571
Cow position: chr29:35196393-35196907 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 83

Conread position: 47-470
Cow position: chr29:4635242-4634835 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 35

Conread position: 67-526
Cow position: chr29:17662661-17663101 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 172

Conread position: 68-573
Cow position: chr29:16022272-16022775 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 60

Conread position: 82-573
Cow position: chr29:11855354-11855847 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 74

Conread position: 87-447
Cow position: chr29:24198860-24198504 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 34

Conread position: 119-571
Cow position: chr29:34925263-34925722 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 281, 0

Conread position: 124-551
Cow position: chr29:27981123-27980694 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 117

Conread position: 145-571
Cow position: chr29:19884887-19885313 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 92

Conread position: 172-414
Cow position: chr29:5983335-5983096 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 150, 57

Conread position: 172-573
Cow position: chr29:11841511-11841903 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 19

Conread position: 189-470
Cow position: chr29:13648279-13648544 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 252, 56

Conread position: 191-573
Cow position: chr29:14585790-14586167 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 53

Conread position: 197-571
Cow position: chr29:670187-669814 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 40

Conread position: 198-573
Cow position: chr29:45587475-45587115 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 259
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 151, 44

Conread position: 238-571
Cow position: chr29:18857038-18856701 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 240-573
Cow position: chr29:42650193-42650531 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 105

Conread position: 240-573
Cow position: chr29:42802053-42802391 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 105

Conread position: 242-455
Cow position: chr29:6471308-6471514 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 38

Conread position: 250-570
Cow position: chr29:2466418-2466092 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 70, 95

Conread position: 253-571
Cow position: chr29:13581995-13582311 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 67, 8

Conread position: 256-573
Cow position: chr29:9643835-9643511 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 154

Conread position: 269-573
Cow position: chr29:4056087-4056395 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 201
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 47

Conread position: 293-527
Cow position: chr29:12796400-12796167 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 151, 12

Conread position: 314-570
Cow position: chr29:10844229-10844482 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 168
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 22

Conread position: 319-573
Cow position: chr29:410536-410280 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 30, 24

Show alignments to all cow chromosomes.