Cow genome map

Conread name: Lng1-LNG010062C07

Conread position: 1-571
Cow position: chr4:66925399-66925963 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 96

Conread position: 2-522
Cow position: chr4:528391-528909 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 29

Conread position: 2-570
Cow position: chr4:32211564-32212132 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 235

Conread position: 2-571
Cow position: chr4:3125179-3125761 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 29

Conread position: 4-571
Cow position: chr4:101529-100967 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 27

Conread position: 11-573
Cow position: chr4:18425111-18424557 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 113

Conread position: 21-373
Cow position: chr4:51044473-51044132 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 129

Conread position: 21-570
Cow position: chr4:65224117-65223569 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 10

Conread position: 26-358
Cow position: chr4:25733622-25733960 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 226
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 100, 193

Conread position: 27-221
Cow position: chr4:9311659-9311853 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 27-308
Cow position: chr4:23114754-23114477 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 199
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 210, 0

Conread position: 27-554
Cow position: chr4:39272516-39271988 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 22

Conread position: 27-569
Cow position: chr4:602419-602957 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 97

Conread position: 27-571
Cow position: chr4:1931198-1930658 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 170

Conread position: 27-571
Cow position: chr4:13547450-13547995 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 210

Conread position: 27-571
Cow position: chr4:47764748-47764205 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 210

Conread position: 27-573
Cow position: chr4:40824823-40824285 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 116

Conread position: 28-571
Cow position: chr4:34185434-34184918 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 15

Conread position: 29-508
Cow position: chr4:496513-496056 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 317
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 123, 93

Conread position: 30-305
Cow position: chr4:54190285-54190553 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 20, 92

Conread position: 31-538
Cow position: chr4:3829920-3830407 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 334
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 50, 22

Conread position: 32-550
Cow position: chr4:4905581-4906091 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 206

Conread position: 33-308
Cow position: chr4:10408206-10408480 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 207

Conread position: 33-553
Cow position: chr4:1464492-1463977 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 94

Conread position: 33-571
Cow position: chr4:5879606-5880131 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 91

Conread position: 33-571
Cow position: chr4:6269200-6268664 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 203

Conread position: 33-571
Cow position: chr4:21338552-21338037 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 46

Conread position: 33-571
Cow position: chr4:28830467-28830995 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 41

Conread position: 33-571
Cow position: chr4:30308024-30307493 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 17

Conread position: 33-571
Cow position: chr4:46663632-46664157 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 94

Conread position: 33-573
Cow position: chr4:6490918-6490397 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 196

Conread position: 34-341
Cow position: chr4:1050191-1049885 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 204

Conread position: 34-464
Cow position: chr4:33493240-33493666 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 10

Conread position: 34-514
Cow position: chr4:29532285-29531807 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 204

Conread position: 34-573
Cow position: chr4:3961024-3961559 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 90

Conread position: 34-573
Cow position: chr4:12241791-12241250 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 205

Conread position: 34-573
Cow position: chr4:13492005-13492543 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 204

Conread position: 34-573
Cow position: chr4:16359321-16359851 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 42

Conread position: 34-573
Cow position: chr4:17926825-17926287 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 118

Conread position: 34-573
Cow position: chr4:18516325-18516864 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 204

Conread position: 34-573
Cow position: chr4:24445770-24445239 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 53

Conread position: 34-573
Cow position: chr4:36895803-36896335 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 10

Conread position: 34-573
Cow position: chr4:41330869-41331406 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 209

Conread position: 34-573
Cow position: chr4:43320207-43319679 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 204

Conread position: 34-573
Cow position: chr4:43880539-43881076 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 15

Conread position: 34-573
Cow position: chr4:44724512-44725051 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 204

Conread position: 34-573
Cow position: chr4:45049866-45049331 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 89

Conread position: 34-573
Cow position: chr4:48025831-48026364 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 155

Conread position: 35-418
Cow position: chr4:31668746-31669121 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 79

Conread position: 35-572
Cow position: chr4:355344-355876 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 89

Conread position: 35-573
Cow position: chr4:8598701-8598191 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 410, 70

Conread position: 36-571
Cow position: chr4:66179554-66179022 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 14

Conread position: 37-573
Cow position: chr4:11393903-11393380 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 66

Conread position: 38-568
Cow position: chr4:9101785-9102300 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 321
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 410, 21

Conread position: 44-573
Cow position: chr4:25600171-25599651 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 24

Conread position: 45-571
Cow position: chr4:16056047-16056567 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 79

Conread position: 50-571
Cow position: chr4:157961-158481 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 102

Conread position: 53-367
Cow position: chr4:11383859-11384164 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 173

Conread position: 57-479
Cow position: chr4:6215100-6214686 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 77

Conread position: 92-573
Cow position: chr4:26887356-26886897 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 99

Conread position: 95-564
Cow position: chr4:47718119-47717650 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 143

Conread position: 102-570
Cow position: chr4:969542-969078 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 308
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 39, 97

Conread position: 103-444
Cow position: chr4:15263484-15263157 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 232
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 84, 17

Conread position: 106-478
Cow position: chr4:24198696-24198342 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 245
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 38, 123

Conread position: 117-565
Cow position: chr4:11618374-11618813 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 14

Conread position: 117-573
Cow position: chr4:57979143-57979595 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 74

Conread position: 118-573
Cow position: chr4:33073584-33073142 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 124

Conread position: 128-556
Cow position: chr4:4175959-4176380 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 290
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 18, 5

Conread position: 131-447
Cow position: chr4:21564676-21564960 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 0

Conread position: 133-569
Cow position: chr4:27332970-27333399 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 105

Conread position: 134-545
Cow position: chr4:62565516-62565918 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 282
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 18, 90

Conread position: 185-569
Cow position: chr4:60264985-60264604 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 57

Conread position: 190-573
Cow position: chr4:41119597-41119981 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 47

Conread position: 249-503
Cow position: chr4:60673513-60673759 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 16

Conread position: 253-511
Cow position: chr4:23493390-23493638 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 191, 58

Conread position: 272-573
Cow position: chr4:12586961-12587266 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 73

Conread position: 286-571
Cow position: chr4:61256572-61256857 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 7, 60

Conread position: 319-571
Cow position: chr4:9355059-9354805 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 129, 0

Conread position: 346-569
Cow position: chr4:11384697-11384919 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 161

Conread position: 363-570
Cow position: chr4:9587019-9587228 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 85, 0

Conread position: 410-571
Cow position: chr4:4415885-4416048 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 34, 0

Show alignments to all cow chromosomes.