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Cow genome map

           
Conread name:
           
Lng1-LNG010062C07
        

               
Conread position:
               
1-570
               

               
Cow position:
               
chrX:24088871-24089438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 32
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chrX:13077224-13076660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
1-571
               

               
Cow position:
               
chrX:13097798-13097234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 31
               

               
Conread position:
               
2-386
               

               
Cow position:
               
chrX:3421970-3421591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 133
               

               
Conread position:
               
2-478
               

               
Cow position:
               
chrX:8479175-8479644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
442, 29
               

               
Conread position:
               
2-559
               

               
Cow position:
               
chrX:26400997-26400444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 29
               

               
Conread position:
               
2-570
               

               
Cow position:
               
chrX:8586564-8587130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 29
               

               
Conread position:
               
2-571
               

               
Cow position:
               
chrX:2603517-2604085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 235
               

               
Conread position:
               
2-571
               

               
Cow position:
               
chrX:6873603-6873036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 64
               

               
Conread position:
               
2-571
               

               
Cow position:
               
chrX:10532089-10531521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 29
               

               
Conread position:
               
2-571
               

               
Cow position:
               
chrX:20316584-20316018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 29
               

               
Conread position:
               
2-571
               

               
Cow position:
               
chrX:22526132-22525567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 29
               

               
Conread position:
               
2-571
               

               
Cow position:
               
chrX:31187765-31187208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
442, 224
               

               
Conread position:
               
4-338
               

               
Cow position:
               
chrX:28549367-28549690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
111, 46
               

               
Conread position:
               
4-447
               

               
Cow position:
               
chrX:22131223-22130795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
432, 123
               

               
Conread position:
               
8-464
               

               
Cow position:
               
chrX:7533573-7534000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
7, 42
               

               
Conread position:
               
8-571
               

               
Cow position:
               
chrX:23046621-23047181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 23
               

               
Conread position:
               
9-295
               

               
Cow position:
               
chrX:20360454-20360176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
11-571
               

               
Cow position:
               
chrX:5862876-5863435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 13
               

               
Conread position:
               
11-571
               

               
Cow position:
               
chrX:16363644-16363087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 20
               

               
Conread position:
               
14-571
               

               
Cow position:
               
chrX:24275151-24275707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 225
               

               
Conread position:
               
16-395
               

               
Cow position:
               
chrX:12316671-12316306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
16-517
               

               
Cow position:
               
chrX:3085419-3084920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 221
               

               
Conread position:
               
17-422
               

               
Cow position:
               
chrX:4795401-4795813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 124
               

               
Conread position:
               
17-481
               

               
Cow position:
               
chrX:19185467-19185022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 23
               

               
Conread position:
               
17-571
               

               
Cow position:
               
chrX:6909852-6909309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 213
               

               
Conread position:
               
17-571
               

               
Cow position:
               
chrX:24122435-24121883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 221
               

               
Conread position:
               
18-571
               

               
Cow position:
               
chrX:30142906-30142359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 216
               

               
Conread position:
               
20-372
               

               
Cow position:
               
chrX:8963569-8963224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
126, 103
               

               
Conread position:
               
21-570
               

               
Cow position:
               
chrX:39521395-39521943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 10
               

               
Conread position:
               
21-571
               

               
Cow position:
               
chrX:9193156-9192607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 10
               

               
Conread position:
               
23-571
               

               
Cow position:
               
chrX:35017307-35017846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 50
               

               
Conread position:
               
23-573
               

               
Cow position:
               
chrX:970254-970806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 216
               

               
Conread position:
               
26-570
               

               
Cow position:
               
chrX:25564900-25564348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
113, 140
               

               
Conread position:
               
26-573
               

               
Cow position:
               
chrX:27990280-27989742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 76
               

               
Conread position:
               
27-239
               

               
Cow position:
               
chrX:28506445-28506231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
198, 0
               

               
Conread position:
               
27-356
               

               
Cow position:
               
chrX:24380804-24381131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 210
               

               
Conread position:
               
27-368
               

               
Cow position:
               
chrX:13052166-13052496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 97
               

               
Conread position:
               
27-446
               

               
Cow position:
               
chrX:2582710-2583128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
27-465
               

               
Cow position:
               
chrX:30666446-30666009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 211
               

               
Conread position:
               
27-471
               

               
Cow position:
               
chrX:17614903-17614475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
238, 71
               

               
Conread position:
               
27-498
               

               
Cow position:
               
chrX:16236826-16237272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 62
               

               
Conread position:
               
27-553
               

               
Cow position:
               
chrX:22893865-22893350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 49
               

               
Conread position:
               
27-559
               

               
Cow position:
               
chrX:5395469-5394937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 186
               

               
Conread position:
               
27-569
               

               
Cow position:
               
chrX:7481100-7481638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 96
               

               
Conread position:
               
27-569
               

               
Cow position:
               
chrX:12280762-12280235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
421, 207
               

               
Conread position:
               
27-569
               

               
Cow position:
               
chrX:20796106-20796648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 32
               

               
Conread position:
               
27-570
               

               
Cow position:
               
chrX:24484914-24484377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:8670089-8670629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 97
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:9007837-9008375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 23
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:9061675-9062211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:13007140-13006588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 158
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:15179935-15179394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 95
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:17479029-17478485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 116
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:21339896-21340441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 23
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:22619821-22619271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 211
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:27426823-27426283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 210
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:28634919-28634379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 97
               

               
Conread position:
               
27-571
               

               
Cow position:
               
chrX:37848506-37849051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 185
               

               
Conread position:
               
27-573
               

               
Cow position:
               
chrX:8454249-8454791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 177
               

               
Conread position:
               
27-573
               

               
Cow position:
               
chrX:17668787-17668263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 22
               

               
Conread position:
               
27-573
               

               
Cow position:
               
chrX:18532499-18533028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 103
               

               
Conread position:
               
28-413
               

               
Cow position:
               
chrX:34344059-34344430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
317, 44
               

               
Conread position:
               
29-571
               

               
Cow position:
               
chrX:21289989-21289454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 53
               

               
Conread position:
               
32-571
               

               
Cow position:
               
chrX:40057563-40057028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 94
               

               
Conread position:
               
33-414
               

               
Cow position:
               
chrX:12341697-12342071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 172
               

               
Conread position:
               
33-508
               

               
Cow position:
               
chrX:11668936-11668469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 100
               

               
Conread position:
               
33-514
               

               
Cow position:
               
chrX:12289442-12288957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 203
               

               
Conread position:
               
33-559
               

               
Cow position:
               
chrX:2860299-2859776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 89
               

               
Conread position:
               
33-569
               

               
Cow position:
               
chrX:5324216-5323688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 17
               

               
Conread position:
               
33-569
               

               
Cow position:
               
chrX:20803639-20804162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
33-570
               

               
Cow position:
               
chrX:22777815-22778348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 93
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:1833334-1833865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 91
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:5284233-5283698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:7029690-7030225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 190
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:7093102-7093635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 17
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:11465497-11464965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 28
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:12655254-12654723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 196
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:13398614-13398083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 128
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:14787373-14786835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 204
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:18218896-18219434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 204
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:21602388-21602916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
406, 146
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:21633082-21632550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
411, 68
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:22583213-22582662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 163
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:24136895-24136368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 204
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:26504695-26505221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 62
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:28759126-28758604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 196
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:29794623-29794079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 165
               

               
Conread position:
               
33-571
               

               
Cow position:
               
chrX:29873058-29872528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 92
               

               
Conread position:
               
33-573
               

               
Cow position:
               
chrX:2101361-2101898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 91
               

               
Conread position:
               
34-290
               

               
Cow position:
               
chrX:38145561-38145812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
34-295
               

               
Cow position:
               
chrX:41151728-41151983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
34-298
               

               
Cow position:
               
chrX:25332594-25332849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
34-325
               

               
Cow position:
               
chrX:29093005-29093289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 0
               

               
Conread position:
               
34-451
               

               
Cow position:
               
chrX:31198102-31198523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
90, 151
               

               
Conread position:
               
34-540
               

               
Cow position:
               
chrX:16017622-16017138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 16
               

               
Conread position:
               
34-560
               

               
Cow position:
               
chrX:32095458-32094937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 99
               

               
Conread position:
               
34-565
               

               
Cow position:
               
chrX:29854063-29853535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 205
               

               
Conread position:
               
34-569
               

               
Cow position:
               
chrX:16698802-16699335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 149
               

               
Conread position:
               
34-570
               

               
Cow position:
               
chrX:21829027-21829560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 15
               

               
Conread position:
               
34-570
               

               
Cow position:
               
chrX:30179492-30178959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 211
               

               
Conread position:
               
34-571
               

               
Cow position:
               
chrX:7751399-7751937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 203
               

               
Conread position:
               
34-571
               

               
Cow position:
               
chrX:13413615-13413079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 204
               

               
Conread position:
               
34-571
               

               
Cow position:
               
chrX:15127742-15127205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 209
               

               
Conread position:
               
34-571
               

               
Cow position:
               
chrX:15598430-15598967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 204
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:319971-320507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 185
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:1546435-1546974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 208
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:2483139-2482599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 209
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:6015954-6015422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:12804359-12803825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
410, 90
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:18955014-18954486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 157
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:21222428-21222967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 204
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:22487689-22488220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 208
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:23392101-23391560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 204
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:23456070-23455539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 157
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:26527476-26528015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 204
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:26767692-26767159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 90
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:30184387-30183855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 64
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:30232603-30232069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
409, 204
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:30710855-30711388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 25
               

               
Conread position:
               
34-573
               

               
Cow position:
               
chrX:32466755-32467291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 90
               

               
Conread position:
               
35-535
               

               
Cow position:
               
chrX:21489735-21490229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 89
               

               
Conread position:
               
35-561
               

               
Cow position:
               
chrX:2787711-2787203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
79, 63
               

               
Conread position:
               
35-569
               

               
Cow position:
               
chrX:29951064-29950545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 89
               

               
Conread position:
               
35-570
               

               
Cow position:
               
chrX:23018834-23019360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 87
               

               
Conread position:
               
35-571
               

               
Cow position:
               
chrX:27494206-27494747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 210
               

               
Conread position:
               
35-573
               

               
Cow position:
               
chrX:20698775-20698260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 185
               

               
Conread position:
               
36-570
               

               
Cow position:
               
chrX:5299700-5299187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
408, 82
               

               
Conread position:
               
36-573
               

               
Cow position:
               
chrX:2142806-2143319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
408, 17
               

               
Conread position:
               
36-573
               

               
Cow position:
               
chrX:26759088-26758566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 206
               

               
Conread position:
               
36-573
               

               
Cow position:
               
chrX:29882744-29882191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 137
               

               
Conread position:
               
37-570
               

               
Cow position:
               
chrX:12478225-12478756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 187
               

               
Conread position:
               
40-570
               

               
Cow position:
               
chrX:2563351-2562821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 201
               

               
Conread position:
               
43-573
               

               
Cow position:
               
chrX:28875892-28875384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
44-569
               

               
Cow position:
               
chrX:17632311-17631794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 20
               

               
Conread position:
               
44-573
               

               
Cow position:
               
chrX:12998050-12997540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
401, 76
               

               
Conread position:
               
44-573
               

               
Cow position:
               
chrX:21270671-21270157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
401, 100
               

               
Conread position:
               
46-478
               

               
Cow position:
               
chrX:2380301-2380714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
303, 60
               

               
Conread position:
               
46-479
               

               
Cow position:
               
chrX:26428513-26428101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
279, 80
               

               
Conread position:
               
50-357
               

               
Cow position:
               
chrX:39717317-39717619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 76
               

               
Conread position:
               
50-571
               

               
Cow position:
               
chrX:32430207-32430695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
68, 39
               

               
Conread position:
               
54-406
               

               
Cow position:
               
chrX:37757301-37757643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 59
               

               
Conread position:
               
63-396
               

               
Cow position:
               
chrX:6276061-6275733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 74
               

               
Conread position:
               
65-240
               

               
Cow position:
               
chrX:12973901-12973728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
65-571
               

               
Cow position:
               
chrX:28562679-28562177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 59
               

               
Conread position:
               
70-316
               

               
Cow position:
               
chrX:13418479-13418244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 10
               

               
Conread position:
               
75-538
               

               
Cow position:
               
chrX:6283539-6283089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 114
               

               
Conread position:
               
95-571
               

               
Cow position:
               
chrX:35529422-35529899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 40
               

               
Conread position:
               
105-573
               

               
Cow position:
               
chrX:5839911-5840371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
114-571
               

               
Cow position:
               
chrX:18660201-18659746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 47
               

               
Conread position:
               
115-573
               

               
Cow position:
               
chrX:34988462-34988938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 107
               

               
Conread position:
               
117-573
               

               
Cow position:
               
chrX:23041532-23041084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 125
               

               
Conread position:
               
127-571
               

               
Cow position:
               
chrX:9124952-9125396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 107
               

               
Conread position:
               
129-570
               

               
Cow position:
               
chrX:2537176-2536745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 89
               

               
Conread position:
               
129-573
               

               
Cow position:
               
chrX:29285028-29285455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
129-573
               

               
Cow position:
               
chrX:30369405-30368979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 6
               

               
Conread position:
               
131-571
               

               
Cow position:
               
chrX:21304942-21304489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 106
               

               
Conread position:
               
137-472
               

               
Cow position:
               
chrX:32468323-32468641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
245, 82
               

               
Conread position:
               
146-570
               

               
Cow position:
               
chrX:41411408-41410985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 13
               

               
Conread position:
               
149-571
               

               
Cow position:
               
chrX:37811777-37812199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 88
               

               
Conread position:
               
164-571
               

               
Cow position:
               
chrX:12670230-12669827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 52
               

               
Conread position:
               
171-573
               

               
Cow position:
               
chrX:40247677-40247277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 58
               

               
Conread position:
               
174-571
               

               
Cow position:
               
chrX:39564289-39563894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 55
               

               
Conread position:
               
191-571
               

               
Cow position:
               
chrX:28603798-28603421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 44
               

               
Conread position:
               
191-571
               

               
Cow position:
               
chrX:29947364-29947744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 46
               

               
Conread position:
               
225-572
               

               
Cow position:
               
chrX:35390405-35390059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
40, 23
               

               
Conread position:
               
238-472
               

               
Cow position:
               
chrX:6886146-6885926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
207, 22
               

               
Conread position:
               
238-473
               

               
Cow position:
               
chrX:21586867-21587103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
82, 76
               

               
Conread position:
               
238-571
               

               
Cow position:
               
chrX:982338-982675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
238-573
               

               
Cow position:
               
chrX:1943343-1943005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 128
               

               
Conread position:
               
238-573
               

               
Cow position:
               
chrX:12973531-12973192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
242-571
               

               
Cow position:
               
chrX:26628328-26627995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
249-568
               

               
Cow position:
               
chrX:44386183-44386510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
255-571
               

               
Cow position:
               
chrX:28584699-28585017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
65, 6
               

               
Conread position:
               
264-513
               

               
Cow position:
               
chrX:5336742-5336491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
56, 81
               

               
Conread position:
               
267-562
               

               
Cow position:
               
chrX:16461406-16461698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
53, 78
               

               
Conread position:
               
270-573
               

               
Cow position:
               
chrX:31192070-31191771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
40, 78
               

               
Conread position:
               
284-573
               

               
Cow position:
               
chrX:30133083-30132796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
285-573
               

               
Cow position:
               
chrX:38146052-38146344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 60
               

               
Conread position:
               
292-563
               

               
Cow position:
               
chrX:5834210-5833935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 53
               

               
Conread position:
               
292-573
               

               
Cow position:
               
chrX:24114437-24114148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
292-573
               

               
Cow position:
               
chrX:29757914-29758200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
32, 109
               

               
Conread position:
               
299-573
               

               
Cow position:
               
chrX:29998556-29998826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
308-569
               

               
Cow position:
               
chrX:31724798-31725061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 9
               

               
Conread position:
               
311-553
               

               
Cow position:
               
chrX:38576048-38575800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 86
               

               
Conread position:
               
317-573
               

               
Cow position:
               
chrX:28549642-28549904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
22, 104
               

               
Conread position:
               
322-590
               

               
Cow position:
               
chrX:11663719-11663449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
348-568
               

               
Cow position:
               
chrX:39719249-39719471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
48, 158
               

               
Conread position:
               
348-573
               

               
Cow position:
               
chrX:24139214-24138989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
96, 149
               

               
Conread position:
               
351-573
               

               
Cow position:
               
chrX:30056457-30056684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
363-571
               

               
Cow position:
               
chrX:30044318-30044108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
364-571
               

               
Cow position:
               
chrX:31493252-31493458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
376-570
               

               
Cow position:
               
chrX:17050933-17051130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
376-570
               

               
Cow position:
               
chrX:47457858-47457661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
377-571
               

               
Cow position:
               
chrX:12353081-12353277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
401-574
               

               
Cow position:
               
chrX:13052497-13052667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
404-573
               

               
Cow position:
               
chrX:23276890-23277061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
415-571
               

               
Cow position:
               
chrX:6275739-6275580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
416-571
               

               
Cow position:
               
chrX:37142710-37142553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
429-571
               

               
Cow position:
               
chrX:20360158-20360014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               
Show alignments to all cow chromosomes.