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Cow genome map

           
Conread name:
           
Lng1-LNG010064H09
        

               
Conread position:
               
58-291
               

               
Cow position:
               
chr13:8450097-8450329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
30, 108
               

               
Conread position:
               
58-736
               

               
Cow position:
               
chr13:17821490-17820803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
515
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
61-257
               

               
Cow position:
               
chr13:39376289-39376486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 11
               

               
Conread position:
               
71-530
               

               
Cow position:
               
chr13:3315908-3315421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
17, 41
               

               
Conread position:
               
72-737
               

               
Cow position:
               
chr13:311211-311893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 184
               

               
Conread position:
               
73-266
               

               
Cow position:
               
chr13:51249598-51249406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 44
               

               
Conread position:
               
73-385
               

               
Cow position:
               
chr13:20534678-20534990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
73-420
               

               
Cow position:
               
chr13:7149719-7149396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 65
               

               
Conread position:
               
73-598
               

               
Cow position:
               
chr13:44201787-44202311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 87
               

               
Conread position:
               
74-300
               

               
Cow position:
               
chr13:17611769-17611544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
74-740
               

               
Cow position:
               
chr13:21235886-21235226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 70
               

               
Conread position:
               
75-424
               

               
Cow position:
               
chr13:18999314-18999689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 133
               

               
Conread position:
               
75-428
               

               
Cow position:
               
chr13:9800304-9800654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
75-478
               

               
Cow position:
               
chr13:19022044-19022479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
75-637
               

               
Cow position:
               
chr13:17855150-17855732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 163
               

               
Conread position:
               
75-740
               

               
Cow position:
               
chr13:19883251-19882583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 91
               

               
Conread position:
               
75-740
               

               
Cow position:
               
chr13:34281463-34282147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
77-314
               

               
Cow position:
               
chr13:20217618-20217376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
77-453
               

               
Cow position:
               
chr13:19188099-19188480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 79
               

               
Conread position:
               
77-503
               

               
Cow position:
               
chr13:15193104-15192669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
11, 176
               

               
Conread position:
               
77-531
               

               
Cow position:
               
chr13:26262007-26261541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
77-710
               

               
Cow position:
               
chr13:34261020-34261688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
77-740
               

               
Cow position:
               
chr13:22085947-22085295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 87
               

               
Conread position:
               
78-269
               

               
Cow position:
               
chr13:3153533-3153727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 120
               

               
Conread position:
               
78-276
               

               
Cow position:
               
chr13:11103422-11103215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
78-276
               

               
Cow position:
               
chr13:33854897-33854700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
78-296
               

               
Cow position:
               
chr13:13196025-13196243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 57
               

               
Conread position:
               
78-303
               

               
Cow position:
               
chr13:1462506-1462286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
128, 116
               

               
Conread position:
               
78-307
               

               
Cow position:
               
chr13:51695754-51695983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
111, 30
               

               
Conread position:
               
78-310
               

               
Cow position:
               
chr13:45439317-45439541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
10, 82
               

               
Conread position:
               
78-312
               

               
Cow position:
               
chr13:20314839-20314602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 94
               

               
Conread position:
               
78-313
               

               
Cow position:
               
chr13:21981184-21980955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 66
               

               
Conread position:
               
78-317
               

               
Cow position:
               
chr13:28440747-28440513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
78-327
               

               
Cow position:
               
chr13:52641165-52640909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
78-342
               

               
Cow position:
               
chr13:21170314-21170586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
78-380
               

               
Cow position:
               
chr13:10220743-10221048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 130
               

               
Conread position:
               
78-380
               

               
Cow position:
               
chr13:16038498-16038191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 84
               

               
Conread position:
               
78-396
               

               
Cow position:
               
chr13:17438076-17437749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 138
               

               
Conread position:
               
78-420
               

               
Cow position:
               
chr13:20360061-20360413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
32, 273
               

               
Conread position:
               
78-428
               

               
Cow position:
               
chr13:54389234-54388870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
78-431
               

               
Cow position:
               
chr13:17569311-17568945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
78-435
               

               
Cow position:
               
chr13:18696609-18697000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 147
               

               
Conread position:
               
78-445
               

               
Cow position:
               
chr13:29831641-29831266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
78-453
               

               
Cow position:
               
chr13:49023080-49022694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
78-476
               

               
Cow position:
               
chr13:23512166-23512558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 70
               

               
Conread position:
               
78-477
               

               
Cow position:
               
chr13:52749678-52749288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
78-479
               

               
Cow position:
               
chr13:52055808-52055393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
78-500
               

               
Cow position:
               
chr13:45074118-45073713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
78-510
               

               
Cow position:
               
chr13:11820946-11821374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
208, 32
               

               
Conread position:
               
78-520
               

               
Cow position:
               
chr13:7076026-7076498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
32, 207
               

               
Conread position:
               
78-521
               

               
Cow position:
               
chr13:55674424-55673962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 426
               

               
Conread position:
               
78-522
               

               
Cow position:
               
chr13:20881135-20880682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
78-527
               

               
Cow position:
               
chr13:19364030-19364493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
104, 45
               

               
Conread position:
               
78-528
               

               
Cow position:
               
chr13:23961021-23960556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
78-528
               

               
Cow position:
               
chr13:42200406-42200868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 75
               

               
Conread position:
               
78-530
               

               
Cow position:
               
chr13:14063735-14063276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 80
               

               
Conread position:
               
78-531
               

               
Cow position:
               
chr13:20839366-20839822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
78-536
               

               
Cow position:
               
chr13:53573764-53574216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
213, 33
               

               
Conread position:
               
78-540
               

               
Cow position:
               
chr13:19393078-19393547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
78-541
               

               
Cow position:
               
chr13:18166518-18166993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
78-552
               

               
Cow position:
               
chr13:6079617-6079144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
78-577
               

               
Cow position:
               
chr13:25817314-25817813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 81
               

               
Conread position:
               
78-595
               

               
Cow position:
               
chr13:17292344-17291816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
78-616
               

               
Cow position:
               
chr13:12449195-12448649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
78-636
               

               
Cow position:
               
chr13:2773901-2774476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 144
               

               
Conread position:
               
78-641
               

               
Cow position:
               
chr13:46515845-46516426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
78-646
               

               
Cow position:
               
chr13:17159097-17158495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 161
               

               
Conread position:
               
78-687
               

               
Cow position:
               
chr13:44278131-44278763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
78-687
               

               
Cow position:
               
chr13:56686228-56686842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
78-700
               

               
Cow position:
               
chr13:12670665-12670031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
78-708
               

               
Cow position:
               
chr13:32017730-32017110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
78-734
               

               
Cow position:
               
chr13:46525644-46525006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 151
               

               
Conread position:
               
78-736
               

               
Cow position:
               
chr13:21106929-21107597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 100
               

               
Conread position:
               
78-737
               

               
Cow position:
               
chr13:6973945-6974631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
78-740
               

               
Cow position:
               
chr13:57770197-57769561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
79-241
               

               
Cow position:
               
chr13:23478687-23478850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 159
               

               
Conread position:
               
79-242
               

               
Cow position:
               
chr13:6951367-6951529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
31, 91
               

               
Conread position:
               
79-266
               

               
Cow position:
               
chr13:6113745-6113552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
79-272
               

               
Cow position:
               
chr13:37555084-37554894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 73
               

               
Conread position:
               
79-299
               

               
Cow position:
               
chr13:57986144-57985931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
79-300
               

               
Cow position:
               
chr13:3209536-3209313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 52
               

               
Conread position:
               
79-300
               

               
Cow position:
               
chr13:37614411-37614183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
33, 219
               

               
Conread position:
               
79-301
               

               
Cow position:
               
chr13:19007730-19007939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
79-406
               

               
Cow position:
               
chr13:49204799-49205105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
79-408
               

               
Cow position:
               
chr13:58763822-58763501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
79-422
               

               
Cow position:
               
chr13:18058460-18058104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
79-426
               

               
Cow position:
               
chr13:26698710-26698348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
79-430
               

               
Cow position:
               
chr13:54582661-54583030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
29, 87
               

               
Conread position:
               
79-453
               

               
Cow position:
               
chr13:5758545-5758169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
162, 27
               

               
Conread position:
               
79-460
               

               
Cow position:
               
chr13:49503754-49503345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
9, 202
               

               
Conread position:
               
79-477
               

               
Cow position:
               
chr13:24229992-24230413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
79-478
               

               
Cow position:
               
chr13:37818958-37818556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
79-503
               

               
Cow position:
               
chr13:17745045-17745467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
79-503
               

               
Cow position:
               
chr13:33054586-33054170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 121
               

               
Conread position:
               
79-506
               

               
Cow position:
               
chr13:37593159-37592708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
84, 33
               

               
Conread position:
               
79-512
               

               
Cow position:
               
chr13:23667044-23667496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 45
               

               
Conread position:
               
79-524
               

               
Cow position:
               
chr13:44322679-44323149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
79-528
               

               
Cow position:
               
chr13:35659541-35660003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 161
               

               
Conread position:
               
79-558
               

               
Cow position:
               
chr13:17021939-17021439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
79-594
               

               
Cow position:
               
chr13:13088819-13089344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 81
               

               
Conread position:
               
79-615
               

               
Cow position:
               
chr13:6189813-6189293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 87
               

               
Conread position:
               
79-651
               

               
Cow position:
               
chr13:38329405-38330006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
79-664
               

               
Cow position:
               
chr13:151757-152330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 27
               

               
Conread position:
               
79-740
               

               
Cow position:
               
chr13:34263586-34262919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
79-740
               

               
Cow position:
               
chr13:38284184-38283519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
80-314
               

               
Cow position:
               
chr13:21171784-21171548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
33, 86
               

               
Conread position:
               
80-326
               

               
Cow position:
               
chr13:17089725-17089483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
80-351
               

               
Cow position:
               
chr13:36876853-36877119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
80-424
               

               
Cow position:
               
chr13:5671798-5671445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
80-522
               

               
Cow position:
               
chr13:21242288-21241848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
80-740
               

               
Cow position:
               
chr13:52057347-52057993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
82-414
               

               
Cow position:
               
chr13:20288128-20288466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
86-576
               

               
Cow position:
               
chr13:54701975-54702485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 419
               

               
Conread position:
               
87-246
               

               
Cow position:
               
chr13:23399561-23399720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 79
               

               
Conread position:
               
87-273
               

               
Cow position:
               
chr13:53850615-53850805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
87-310
               

               
Cow position:
               
chr13:55494724-55494510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr13:19598870-19598646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
25, 93
               

               
Conread position:
               
87-314
               

               
Cow position:
               
chr13:35557316-35557089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
87-380
               

               
Cow position:
               
chr13:620453-620158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
87-381
               

               
Cow position:
               
chr13:46329808-46329500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
220, 23
               

               
Conread position:
               
87-396
               

               
Cow position:
               
chr13:19278890-19279209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
26, 37
               

               
Conread position:
               
87-449
               

               
Cow position:
               
chr13:20473880-20473515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
87-462
               

               
Cow position:
               
chr13:47186025-47186409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 124
               

               
Conread position:
               
87-487
               

               
Cow position:
               
chr13:37803674-37804089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
26, 211
               

               
Conread position:
               
87-515
               

               
Cow position:
               
chr13:24585843-24586284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
87-518
               

               
Cow position:
               
chr13:19610769-19610339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
26, 94
               

               
Conread position:
               
87-520
               

               
Cow position:
               
chr13:17114586-17114138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 117
               

               
Conread position:
               
87-532
               

               
Cow position:
               
chr13:20784389-20784842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
87-596
               

               
Cow position:
               
chr13:27525464-27524943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 82
               

               
Conread position:
               
87-640
               

               
Cow position:
               
chr13:13320592-13321139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
87-737
               

               
Cow position:
               
chr13:972102-971435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 83
               

               
Conread position:
               
87-740
               

               
Cow position:
               
chr13:61977163-61976503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
88-357
               

               
Cow position:
               
chr13:11933810-11933541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 124
               

               
Conread position:
               
88-425
               

               
Cow position:
               
chr13:11808377-11808706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 56
               

               
Conread position:
               
88-430
               

               
Cow position:
               
chr13:14016761-14016416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
211, 26
               

               
Conread position:
               
88-464
               

               
Cow position:
               
chr13:15991435-15991035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
88-543
               

               
Cow position:
               
chr13:19024056-19023574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
22, 125
               

               
Conread position:
               
88-740
               

               
Cow position:
               
chr13:49804784-49805431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 22
               

               
Conread position:
               
90-272
               

               
Cow position:
               
chr13:31507644-31507464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
90-272
               

               
Cow position:
               
chr13:52913674-52913853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
90-288
               

               
Cow position:
               
chr13:18340328-18340529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
90-300
               

               
Cow position:
               
chr13:40541311-40541097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 120
               

               
Conread position:
               
90-300
               

               
Cow position:
               
chr13:49393152-49392935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
90-300
               

               
Cow position:
               
chr13:54128800-54128588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
90-308
               

               
Cow position:
               
chr13:2776082-2776304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
90-308
               

               
Cow position:
               
chr13:45130314-45130533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
90-313
               

               
Cow position:
               
chr13:18197810-18197587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
90-347
               

               
Cow position:
               
chr13:33962961-33962708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 70
               

               
Conread position:
               
90-378
               

               
Cow position:
               
chr13:15659073-15659377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
90-395
               

               
Cow position:
               
chr13:27550533-27550857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 123
               

               
Conread position:
               
90-404
               

               
Cow position:
               
chr13:14576013-14576334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
90-411
               

               
Cow position:
               
chr13:14879157-14878818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 123
               

               
Conread position:
               
90-417
               

               
Cow position:
               
chr13:21269783-21269440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
90-424
               

               
Cow position:
               
chr13:2822665-2823006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 47
               

               
Conread position:
               
90-433
               

               
Cow position:
               
chr13:17450890-17451251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 123
               

               
Conread position:
               
90-477
               

               
Cow position:
               
chr13:37775408-37775027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
90-478
               

               
Cow position:
               
chr13:20509525-20509933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
20, 127
               

               
Conread position:
               
90-481
               

               
Cow position:
               
chr13:19223449-19223853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
23, 124
               

               
Conread position:
               
90-481
               

               
Cow position:
               
chr13:48597707-48598108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
90-499
               

               
Cow position:
               
chr13:5263481-5263065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
90-501
               

               
Cow position:
               
chr13:7059256-7059698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
23, 123
               

               
Conread position:
               
90-522
               

               
Cow position:
               
chr13:9587784-9587340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
90-525
               

               
Cow position:
               
chr13:60600138-60599695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
23, 102
               

               
Conread position:
               
90-530
               

               
Cow position:
               
chr13:43595307-43594864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 115
               

               
Conread position:
               
90-539
               

               
Cow position:
               
chr13:21288287-21287829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
90-543
               

               
Cow position:
               
chr13:15041677-15041207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 194
               

               
Conread position:
               
90-649
               

               
Cow position:
               
chr13:20821039-20820466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
90-685
               

               
Cow position:
               
chr13:12045548-12044932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 422
               

               
Conread position:
               
90-698
               

               
Cow position:
               
chr13:20880027-20879414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
90-709
               

               
Cow position:
               
chr13:42113813-42114443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
90-719
               

               
Cow position:
               
chr13:47007915-47007295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
90-728
               

               
Cow position:
               
chr13:9906526-9907187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 122
               

               
Conread position:
               
90-736
               

               
Cow position:
               
chr13:6616965-6616288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 118
               

               
Conread position:
               
90-737
               

               
Cow position:
               
chr13:20174535-20175199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
90-740
               

               
Cow position:
               
chr13:41806574-41807217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 23
               

               
Conread position:
               
93-300
               

               
Cow position:
               
chr13:15996837-15997042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
93-310
               

               
Cow position:
               
chr13:54353243-54353025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
93-380
               

               
Cow position:
               
chr13:12974616-12974905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
20, 68
               

               
Conread position:
               
93-411
               

               
Cow position:
               
chr13:25579394-25579053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 121
               

               
Conread position:
               
93-426
               

               
Cow position:
               
chr13:13251611-13251277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
93-434
               

               
Cow position:
               
chr13:607462-607108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
20, 121
               

               
Conread position:
               
93-447
               

               
Cow position:
               
chr13:13954595-13954218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 118
               

               
Conread position:
               
93-453
               

               
Cow position:
               
chr13:17338226-17338610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
22, 120
               

               
Conread position:
               
93-513
               

               
Cow position:
               
chr13:24369386-24369820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
93-519
               

               
Cow position:
               
chr13:10925122-10924665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
18, 112
               

               
Conread position:
               
93-532
               

               
Cow position:
               
chr13:8194897-8195335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
93-568
               

               
Cow position:
               
chr13:15257566-15257086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 135
               

               
Conread position:
               
93-634
               

               
Cow position:
               
chr13:8362946-8362389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 114
               

               
Conread position:
               
93-736
               

               
Cow position:
               
chr13:12977379-12978014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 67
               

               
Conread position:
               
94-396
               

               
Cow position:
               
chr13:15194919-15194613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
94-702
               

               
Cow position:
               
chr13:20893842-20893213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 137
               

               
Conread position:
               
95-740
               

               
Cow position:
               
chr13:44626168-44626829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 117
               

               
Conread position:
               
96-430
               

               
Cow position:
               
chr13:6930727-6931068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
96-663
               

               
Cow position:
               
chr13:52283712-52284294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
96-684
               

               
Cow position:
               
chr13:15289115-15288526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
97-333
               

               
Cow position:
               
chr13:43183049-43183295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 78
               

               
Conread position:
               
98-300
               

               
Cow position:
               
chr13:18548507-18548713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
98-407
               

               
Cow position:
               
chr13:39233021-39232702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
98-478
               

               
Cow position:
               
chr13:61188334-61188736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 116
               

               
Conread position:
               
98-539
               

               
Cow position:
               
chr13:54382118-54381674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
98-740
               

               
Cow position:
               
chr13:33875478-33876118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
99-427
               

               
Cow position:
               
chr13:17150228-17150557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
97, 62
               

               
Conread position:
               
99-587
               

               
Cow position:
               
chr13:20814467-20813973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
99-602
               

               
Cow position:
               
chr13:2883864-2884375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
14, 207
               

               
Conread position:
               
102-552
               

               
Cow position:
               
chr13:61047020-61047481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
102-740
               

               
Cow position:
               
chr13:20606311-20605658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 399
               

               
Conread position:
               
102-740
               

               
Cow position:
               
chr13:31808337-31808976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
102-740
               

               
Cow position:
               
chr13:34375073-34375719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 72
               

               
Conread position:
               
105-728
               

               
Cow position:
               
chr13:58043438-58044080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 85
               

               
Conread position:
               
109-424
               

               
Cow position:
               
chr13:1363509-1363841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
81, 52
               

               
Conread position:
               
109-530
               

               
Cow position:
               
chr13:23478847-23479281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 298
               

               
Conread position:
               
109-581
               

               
Cow position:
               
chr13:14927081-14927541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 55
               

               
Conread position:
               
109-692
               

               
Cow position:
               
chr13:8203051-8202473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 102
               

               
Conread position:
               
109-740
               

               
Cow position:
               
chr13:20666567-20665927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 55
               

               
Conread position:
               
109-740
               

               
Cow position:
               
chr13:60509305-60508659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 97
               

               
Conread position:
               
113-482
               

               
Cow position:
               
chr13:52228275-52227895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
69, 43
               

               
Conread position:
               
122-482
               

               
Cow position:
               
chr13:53195450-53195087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 52
               

               
Conread position:
               
122-653
               

               
Cow position:
               
chr13:32950159-32949631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
125-497
               

               
Cow position:
               
chr13:17004765-17004373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
36, 89
               

               
Conread position:
               
126-370
               

               
Cow position:
               
chr13:50751224-50750961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
129-660
               

               
Cow position:
               
chr13:6087053-6086517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 47
               

               
Conread position:
               
136-740
               

               
Cow position:
               
chr13:56155305-56154715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
618
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 32
               

               
Conread position:
               
138-614
               

               
Cow position:
               
chr13:34507734-34508213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 34
               

               
Conread position:
               
142-420
               

               
Cow position:
               
chr13:11381872-11381579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 14
               

               
Conread position:
               
142-430
               

               
Cow position:
               
chr13:28689312-28689619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
143-696
               

               
Cow position:
               
chr13:12547055-12546486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 35
               

               
Conread position:
               
143-735
               

               
Cow position:
               
chr13:46324936-46324331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 43
               

               
Conread position:
               
144-416
               

               
Cow position:
               
chr13:51116171-51115889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
157, 24
               

               
Conread position:
               
144-464
               

               
Cow position:
               
chr13:21283850-21283519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
45, 34
               

               
Conread position:
               
144-497
               

               
Cow position:
               
chr13:18172188-18172559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
148, 358
               

               
Conread position:
               
144-503
               

               
Cow position:
               
chr13:17439916-17439541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 98
               

               
Conread position:
               
144-516
               

               
Cow position:
               
chr13:20679193-20679582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
155, 18
               

               
Conread position:
               
144-570
               

               
Cow position:
               
chr13:51822020-51821595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
186, 24
               

               
Conread position:
               
144-725
               

               
Cow position:
               
chr13:36771567-36770973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
144-740
               

               
Cow position:
               
chr13:51940588-51941198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 18
               

               
Conread position:
               
145-503
               

               
Cow position:
               
chr13:55316342-55315964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
146-380
               

               
Cow position:
               
chr13:47022221-47022462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
157, 7
               

               
Conread position:
               
146-686
               

               
Cow position:
               
chr13:8609693-8609151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
147-736
               

               
Cow position:
               
chr13:15460919-15460338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 29
               

               
Conread position:
               
148-636
               

               
Cow position:
               
chr13:1043106-1042597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 30
               

               
Conread position:
               
149-653
               

               
Cow position:
               
chr13:18835061-18835563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 87
               

               
Conread position:
               
150-460
               

               
Cow position:
               
chr13:11643799-11644116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
149, 52
               

               
Conread position:
               
150-655
               

               
Cow position:
               
chr13:45604556-45604039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
155-526
               

               
Cow position:
               
chr13:11460495-11460871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 337
               

               
Conread position:
               
156-635
               

               
Cow position:
               
chr13:11820463-11820935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 51
               

               
Conread position:
               
159-740
               

               
Cow position:
               
chr13:31813742-31814323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 273
               

               
Conread position:
               
161-540
               

               
Cow position:
               
chr13:15233795-15234172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 253
               

               
Conread position:
               
162-536
               

               
Cow position:
               
chr13:11060857-11061243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
41, 270
               

               
Conread position:
               
162-634
               

               
Cow position:
               
chr13:21176449-21175966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 34
               

               
Conread position:
               
163-637
               

               
Cow position:
               
chr13:23270334-23269853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 72
               

               
Conread position:
               
164-732
               

               
Cow position:
               
chr13:10929116-10928536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 91
               

               
Conread position:
               
191-443
               

               
Cow position:
               
chr13:15902923-15903183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
111, 143
               

               
Conread position:
               
204-619
               

               
Cow position:
               
chr13:890257-889842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 55
               

               
Conread position:
               
205-731
               

               
Cow position:
               
chr13:37484366-37483809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 303
               

               
Conread position:
               
208-587
               

               
Cow position:
               
chr13:20816239-20816620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 94
               

               
Conread position:
               
208-636
               

               
Cow position:
               
chr13:40651850-40652292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
209-518
               

               
Cow position:
               
chr13:13176567-13176889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
84, 207
               

               
Conread position:
               
209-733
               

               
Cow position:
               
chr13:34941733-34941200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 176
               

               
Conread position:
               
211-398
               

               
Cow position:
               
chr13:34555909-34555711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
211-405
               

               
Cow position:
               
chr13:15144447-15144244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 145
               

               
Conread position:
               
211-418
               

               
Cow position:
               
chr13:48375714-48375504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 122
               

               
Conread position:
               
211-422
               

               
Cow position:
               
chr13:17966290-17966064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
211-435
               

               
Cow position:
               
chr13:62600926-62601163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
100, 173
               

               
Conread position:
               
211-474
               

               
Cow position:
               
chr13:8652523-8652240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 197
               

               
Conread position:
               
211-477
               

               
Cow position:
               
chr13:15529117-15528828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
211-482
               

               
Cow position:
               
chr13:9643968-9643677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
211-503
               

               
Cow position:
               
chr13:39459734-39460012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
284, 96
               

               
Conread position:
               
211-509
               

               
Cow position:
               
chr13:6061089-6060777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
102, 289
               

               
Conread position:
               
211-509
               

               
Cow position:
               
chr13:11955198-11954883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 189
               

               
Conread position:
               
211-523
               

               
Cow position:
               
chr13:8524699-8524376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
84, 165
               

               
Conread position:
               
211-526
               

               
Cow position:
               
chr13:13501699-13501374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
85, 95
               

               
Conread position:
               
211-526
               

               
Cow position:
               
chr13:15885103-15884766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
84, 296
               

               
Conread position:
               
211-558
               

               
Cow position:
               
chr13:18243781-18244135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
81, 213
               

               
Conread position:
               
211-610
               

               
Cow position:
               
chr13:17622207-17622617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 248
               

               
Conread position:
               
211-612
               

               
Cow position:
               
chr13:19138359-19138772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 218
               

               
Conread position:
               
211-637
               

               
Cow position:
               
chr13:53566520-53566944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
211-689
               

               
Cow position:
               
chr13:20650068-20649576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 229
               

               
Conread position:
               
212-420
               

               
Cow position:
               
chr13:52929631-52929852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
212-740
               

               
Cow position:
               
chr13:46181712-46182236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 190
               

               
Conread position:
               
213-458
               

               
Cow position:
               
chr13:20231269-20231019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
96, 10
               

               
Conread position:
               
213-526
               

               
Cow position:
               
chr13:8201562-8201237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
39, 177
               

               
Conread position:
               
213-753
               

               
Cow position:
               
chr13:7663501-7662954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 223
               

               
Conread position:
               
219-740
               

               
Cow position:
               
chr13:12619188-12618628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 393
               

               
Conread position:
               
220-543
               

               
Cow position:
               
chr13:55295698-55295361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
220-549
               

               
Cow position:
               
chr13:24376421-24376758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
80, 209
               

               
Conread position:
               
225-734
               

               
Cow position:
               
chr13:52922031-52922559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 11
               

               
Conread position:
               
233-530
               

               
Cow position:
               
chr13:30693655-30693953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
67, 176
               

               
Conread position:
               
240-734
               

               
Cow position:
               
chr13:20440633-20440143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 141
               

               
Conread position:
               
245-443
               

               
Cow position:
               
chr13:28652756-28652964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
251-466
               

               
Cow position:
               
chr13:966050-966267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
74, 52
               

               
Conread position:
               
260-510
               

               
Cow position:
               
chr13:54093713-54093972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
42, 147
               

               
Conread position:
               
261-722
               

               
Cow position:
               
chr13:12682577-12682095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 243
               

               
Conread position:
               
310-518
               

               
Cow position:
               
chr13:54331043-54331259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 185
               

               
Conread position:
               
329-501
               

               
Cow position:
               
chr13:6975742-6975567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
11, 84
               

               
Conread position:
               
330-740
               

               
Cow position:
               
chr13:3701490-3701896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
334-736
               

               
Cow position:
               
chr13:19426640-19426238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 75
               

               
Conread position:
               
337-523
               

               
Cow position:
               
chr13:12282894-12283080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 147
               

               
Conread position:
               
338-620
               

               
Cow position:
               
chr13:13265868-13266144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 102
               

               
Conread position:
               
339-464
               

               
Cow position:
               
chr13:22025647-22025522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
339-502
               

               
Cow position:
               
chr13:20536562-20536724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 87
               

               
Conread position:
               
339-605
               

               
Cow position:
               
chr13:20834795-20834529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
162, 145
               

               
Conread position:
               
339-607
               

               
Cow position:
               
chr13:38484893-38485148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
33, 92
               

               
Conread position:
               
339-649
               

               
Cow position:
               
chr13:563081-562765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 150
               

               
Conread position:
               
339-731
               

               
Cow position:
               
chr13:25249095-25248684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 177
               

               
Conread position:
               
339-740
               

               
Cow position:
               
chr13:27027713-27027314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 152
               

               
Conread position:
               
340-547
               

               
Cow position:
               
chr13:38278072-38277868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
65, 0
               
Show alignments to all cow chromosomes.