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Cow genome map

           
Conread name:
           
Lng1-LNG010064H09
        

               
Conread position:
               
53-399
               

               
Cow position:
               
chr15:49273823-49274177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
54-291
               

               
Cow position:
               
chr15:50332837-50333083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 127
               

               
Conread position:
               
58-300
               

               
Cow position:
               
chr15:3695505-3695744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
5, 15
               

               
Conread position:
               
58-567
               

               
Cow position:
               
chr15:26158727-26158228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
59-740
               

               
Cow position:
               
chr15:14870626-14871307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
710
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 17
               

               
Conread position:
               
70-400
               

               
Cow position:
               
chr15:24982299-24981966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
71-740
               

               
Cow position:
               
chr15:26912185-26911513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 12
               

               
Conread position:
               
72-371
               

               
Cow position:
               
chr15:49784397-49784093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
72-430
               

               
Cow position:
               
chr15:36887720-36888080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
73-300
               

               
Cow position:
               
chr15:4694633-4694855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
73-499
               

               
Cow position:
               
chr15:50322495-50322920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
227, 46
               

               
Conread position:
               
73-603
               

               
Cow position:
               
chr15:3700401-3699854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
73-641
               

               
Cow position:
               
chr15:22530965-22531523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 82
               

               
Conread position:
               
75-736
               

               
Cow position:
               
chr15:25208874-25208203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 420
               

               
Conread position:
               
77-526
               

               
Cow position:
               
chr15:21893665-21894134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
77-528
               

               
Cow position:
               
chr15:27973320-27972861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 65
               

               
Conread position:
               
77-530
               

               
Cow position:
               
chr15:24994628-24994172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
77-697
               

               
Cow position:
               
chr15:31201888-31202530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 214
               

               
Conread position:
               
78-241
               

               
Cow position:
               
chr15:848536-848696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
78-255
               

               
Cow position:
               
chr15:17124582-17124401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 92
               

               
Conread position:
               
78-299
               

               
Cow position:
               
chr15:11909058-11908840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 140
               

               
Conread position:
               
78-306
               

               
Cow position:
               
chr15:36952310-36952086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
78-310
               

               
Cow position:
               
chr15:21903518-21903290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
78-311
               

               
Cow position:
               
chr15:15154188-15154423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 32
               

               
Conread position:
               
78-312
               

               
Cow position:
               
chr15:18073607-18073845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
83, 133
               

               
Conread position:
               
78-313
               

               
Cow position:
               
chr15:20390821-20390587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
78-315
               

               
Cow position:
               
chr15:40835003-40835241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
78-326
               

               
Cow position:
               
chr15:19554037-19553779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
78-333
               

               
Cow position:
               
chr15:39299428-39299170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 81
               

               
Conread position:
               
78-370
               

               
Cow position:
               
chr15:6233126-6232819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 73
               

               
Conread position:
               
78-370
               

               
Cow position:
               
chr15:34284518-34284215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 18
               

               
Conread position:
               
78-371
               

               
Cow position:
               
chr15:38652714-38652425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 138
               

               
Conread position:
               
78-402
               

               
Cow position:
               
chr15:1857615-1857956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 51
               

               
Conread position:
               
78-429
               

               
Cow position:
               
chr15:18671560-18671192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
222, 35
               

               
Conread position:
               
78-430
               

               
Cow position:
               
chr15:31137577-31137208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
78-474
               

               
Cow position:
               
chr15:26919381-26918972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
78-476
               

               
Cow position:
               
chr15:1722952-1722548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
78-477
               

               
Cow position:
               
chr15:44658255-44658664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 80
               

               
Conread position:
               
78-479
               

               
Cow position:
               
chr15:14576219-14576624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 79
               

               
Conread position:
               
78-490
               

               
Cow position:
               
chr15:12722973-12723403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 205
               

               
Conread position:
               
78-512
               

               
Cow position:
               
chr15:22938878-22938439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 137
               

               
Conread position:
               
78-525
               

               
Cow position:
               
chr15:22531562-22532012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
78-530
               

               
Cow position:
               
chr15:14020384-14020827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
78-537
               

               
Cow position:
               
chr15:22553654-22553158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 86
               

               
Conread position:
               
78-540
               

               
Cow position:
               
chr15:36259708-36259225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
78-633
               

               
Cow position:
               
chr15:20487312-20486749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 101
               

               
Conread position:
               
78-636
               

               
Cow position:
               
chr15:43626352-43626919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 348
               

               
Conread position:
               
78-637
               

               
Cow position:
               
chr15:20391388-20390826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 322
               

               
Conread position:
               
78-649
               

               
Cow position:
               
chr15:46563588-46563002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
78-730
               

               
Cow position:
               
chr15:38161889-38162563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 132
               

               
Conread position:
               
78-734
               

               
Cow position:
               
chr15:14505334-14505987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 24
               

               
Conread position:
               
78-734
               

               
Cow position:
               
chr15:40798529-40797868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
78-736
               

               
Cow position:
               
chr15:6227287-6226631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 32
               

               
Conread position:
               
78-736
               

               
Cow position:
               
chr15:6969874-6970541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 103
               

               
Conread position:
               
78-737
               

               
Cow position:
               
chr15:16112283-16112972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 433
               

               
Conread position:
               
78-740
               

               
Cow position:
               
chr15:25667336-25666647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
78-740
               

               
Cow position:
               
chr15:37381515-37382191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 91
               

               
Conread position:
               
79-273
               

               
Cow position:
               
chr15:34223757-34223951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
79-296
               

               
Cow position:
               
chr15:19002393-19002168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 117
               

               
Conread position:
               
79-300
               

               
Cow position:
               
chr15:13432372-13432597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
31, 94
               

               
Conread position:
               
79-342
               

               
Cow position:
               
chr15:14987885-14988150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
79-378
               

               
Cow position:
               
chr15:31929008-31928694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
79-393
               

               
Cow position:
               
chr15:30471089-30470750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
79-416
               

               
Cow position:
               
chr15:28823922-28823579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
193, 64
               

               
Conread position:
               
79-468
               

               
Cow position:
               
chr15:21822039-21821625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
79-482
               

               
Cow position:
               
chr15:47844198-47843798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 79
               

               
Conread position:
               
79-487
               

               
Cow position:
               
chr15:10088209-10088628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
79-501
               

               
Cow position:
               
chr15:12304529-12304968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
79-502
               

               
Cow position:
               
chr15:52316950-52317350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
30, 69
               

               
Conread position:
               
79-733
               

               
Cow position:
               
chr15:36435092-36435767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
480
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 135
               

               
Conread position:
               
79-735
               

               
Cow position:
               
chr15:30047664-30046974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 109
               

               
Conread position:
               
79-737
               

               
Cow position:
               
chr15:22532143-22532803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
79-740
               

               
Cow position:
               
chr15:20534563-20533881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 99
               

               
Conread position:
               
80-510
               

               
Cow position:
               
chr15:10246104-10245673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
33, 132
               

               
Conread position:
               
80-737
               

               
Cow position:
               
chr15:16583807-16583141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 103
               

               
Conread position:
               
81-314
               

               
Cow position:
               
chr15:26851332-26851102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
82-307
               

               
Cow position:
               
chr15:43851695-43851468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
22, 185
               

               
Conread position:
               
84-631
               

               
Cow position:
               
chr15:33306015-33306564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 45
               

               
Conread position:
               
85-740
               

               
Cow position:
               
chr15:16603726-16604398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 12
               

               
Conread position:
               
86-464
               

               
Cow position:
               
chr15:5420985-5420591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
27, 74
               

               
Conread position:
               
86-531
               

               
Cow position:
               
chr15:11011696-11011252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 29
               

               
Conread position:
               
87-252
               

               
Cow position:
               
chr15:8331299-8331138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
87-253
               

               
Cow position:
               
chr15:40844723-40844554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
87-300
               

               
Cow position:
               
chr15:26442112-26442327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
87-347
               

               
Cow position:
               
chr15:49131957-49132214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 71
               

               
Conread position:
               
87-407
               

               
Cow position:
               
chr15:9879482-9879162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
106, 23
               

               
Conread position:
               
87-414
               

               
Cow position:
               
chr15:53716332-53716673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
87-496
               

               
Cow position:
               
chr15:39598143-39598560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
87-522
               

               
Cow position:
               
chr15:11658685-11658217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 136
               

               
Conread position:
               
87-578
               

               
Cow position:
               
chr15:22939426-22938931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
87-628
               

               
Cow position:
               
chr15:47042745-47042171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 305
               

               
Conread position:
               
87-736
               

               
Cow position:
               
chr15:1083472-1082823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 23
               

               
Conread position:
               
87-740
               

               
Cow position:
               
chr15:1330211-1329538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
88-273
               

               
Cow position:
               
chr15:36422517-36422697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
22, 85
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr15:41056310-41056092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
88-501
               

               
Cow position:
               
chr15:17762809-17763226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
88-515
               

               
Cow position:
               
chr15:16476852-16476403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 103
               

               
Conread position:
               
88-560
               

               
Cow position:
               
chr15:43914199-43913695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
27, 125
               

               
Conread position:
               
88-737
               

               
Cow position:
               
chr15:6647349-6648011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 116
               

               
Conread position:
               
89-291
               

               
Cow position:
               
chr15:11614195-11613989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 103
               

               
Conread position:
               
89-311
               

               
Cow position:
               
chr15:13701872-13701648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 124
               

               
Conread position:
               
89-333
               

               
Cow position:
               
chr15:16530871-16530623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
89-475
               

               
Cow position:
               
chr15:24031096-24031481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
90-247
               

               
Cow position:
               
chr15:49483527-49483687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
90-272
               

               
Cow position:
               
chr15:28099013-28099196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
90-311
               

               
Cow position:
               
chr15:8679858-8679636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 123
               

               
Conread position:
               
90-312
               

               
Cow position:
               
chr15:24453173-24452950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
90-327
               

               
Cow position:
               
chr15:31028759-31028511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
90-368
               

               
Cow position:
               
chr15:14474241-14474532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 101
               

               
Conread position:
               
90-380
               

               
Cow position:
               
chr15:36635930-36636242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 127
               

               
Conread position:
               
90-453
               

               
Cow position:
               
chr15:4862006-4861630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
90-453
               

               
Cow position:
               
chr15:41045303-41045685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
25, 99
               

               
Conread position:
               
90-509
               

               
Cow position:
               
chr15:30001597-30002024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
90-620
               

               
Cow position:
               
chr15:16543537-16543017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 21
               

               
Conread position:
               
90-620
               

               
Cow position:
               
chr15:26896798-26896274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 201
               

               
Conread position:
               
90-640
               

               
Cow position:
               
chr15:23798621-23798055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
90-646
               

               
Cow position:
               
chr15:20472643-20472073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 68
               

               
Conread position:
               
90-672
               

               
Cow position:
               
chr15:51822051-51822640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 123
               

               
Conread position:
               
90-737
               

               
Cow position:
               
chr15:4677097-4676442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
90-737
               

               
Cow position:
               
chr15:17233087-17233748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 418
               

               
Conread position:
               
90-740
               

               
Cow position:
               
chr15:608044-608729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 425
               

               
Conread position:
               
90-740
               

               
Cow position:
               
chr15:21608822-21608162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 343
               

               
Conread position:
               
90-740
               

               
Cow position:
               
chr15:24967702-24968355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 83
               

               
Conread position:
               
93-312
               

               
Cow position:
               
chr15:27063613-27063397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
93-313
               

               
Cow position:
               
chr15:9465578-9465800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 117
               

               
Conread position:
               
93-327
               

               
Cow position:
               
chr15:25571908-25571663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 120
               

               
Conread position:
               
93-402
               

               
Cow position:
               
chr15:17337276-17337587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
217, 26
               

               
Conread position:
               
93-419
               

               
Cow position:
               
chr15:8353945-8354289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
93-424
               

               
Cow position:
               
chr15:11559448-11559106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
93-453
               

               
Cow position:
               
chr15:244686-245054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 20
               

               
Conread position:
               
93-475
               

               
Cow position:
               
chr15:9622084-9622494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
93-498
               

               
Cow position:
               
chr15:26903097-26903519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
93-509
               

               
Cow position:
               
chr15:31857493-31857927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
93-604
               

               
Cow position:
               
chr15:30981856-30982345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 52
               

               
Conread position:
               
93-637
               

               
Cow position:
               
chr15:4789063-4788497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
93-649
               

               
Cow position:
               
chr15:20370548-20369996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
93-740
               

               
Cow position:
               
chr15:17196049-17196703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 219
               

               
Conread position:
               
93-740
               

               
Cow position:
               
chr15:43827868-43827209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 133
               

               
Conread position:
               
94-482
               

               
Cow position:
               
chr15:27900600-27900195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
94-531
               

               
Cow position:
               
chr15:1297651-1298093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
212, 64
               

               
Conread position:
               
95-429
               

               
Cow position:
               
chr15:4295665-4296020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
95-441
               

               
Cow position:
               
chr15:23275439-23275801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 286
               

               
Conread position:
               
95-463
               

               
Cow position:
               
chr15:33642996-33643376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
95-575
               

               
Cow position:
               
chr15:30316654-30316184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 60
               

               
Conread position:
               
95-735
               

               
Cow position:
               
chr15:24616473-24617126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 85
               

               
Conread position:
               
95-736
               

               
Cow position:
               
chr15:26079440-26078804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
96-528
               

               
Cow position:
               
chr15:12785336-12785790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
94, 145
               

               
Conread position:
               
96-587
               

               
Cow position:
               
chr15:52482922-52482415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 116
               

               
Conread position:
               
96-587
               

               
Cow position:
               
chr15:53163927-53164433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
96-740
               

               
Cow position:
               
chr15:28038698-28039312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 14
               

               
Conread position:
               
97-405
               

               
Cow position:
               
chr15:23866161-23865836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
97-551
               

               
Cow position:
               
chr15:40423721-40423271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
42, 13
               

               
Conread position:
               
97-653
               

               
Cow position:
               
chr15:5571721-5571154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
98-354
               

               
Cow position:
               
chr15:40231027-40231291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
98-402
               

               
Cow position:
               
chr15:36353578-36353897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
98-406
               

               
Cow position:
               
chr15:22930441-22930107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 30
               

               
Conread position:
               
98-470
               

               
Cow position:
               
chr15:23114741-23115132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
18, 114
               

               
Conread position:
               
98-501
               

               
Cow position:
               
chr15:38394336-38394747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
15, 91
               

               
Conread position:
               
98-636
               

               
Cow position:
               
chr15:18605316-18605844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
98-736
               

               
Cow position:
               
chr15:32980125-32979479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 113
               

               
Conread position:
               
98-740
               

               
Cow position:
               
chr15:33284785-33285435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 112
               

               
Conread position:
               
99-369
               

               
Cow position:
               
chr15:19807813-19807522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 119
               

               
Conread position:
               
99-740
               

               
Cow position:
               
chr15:5984677-5984030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
102-338
               

               
Cow position:
               
chr15:13554019-13554253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
102-441
               

               
Cow position:
               
chr15:32241888-32242246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
8, 111
               

               
Conread position:
               
102-543
               

               
Cow position:
               
chr15:31283295-31283737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
102-552
               

               
Cow position:
               
chr15:38806592-38806120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
102-579
               

               
Cow position:
               
chr15:23180358-23180825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
102-740
               

               
Cow position:
               
chr15:28924843-28924205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 45
               

               
Conread position:
               
103-311
               

               
Cow position:
               
chr15:40015091-40014881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 110
               

               
Conread position:
               
104-443
               

               
Cow position:
               
chr15:11560603-11560245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
105-417
               

               
Cow position:
               
chr15:50265570-50265246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
109-314
               

               
Cow position:
               
chr15:13395470-13395673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
54, 84
               

               
Conread position:
               
109-501
               

               
Cow position:
               
chr15:21907865-21908261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
184, 31
               

               
Conread position:
               
123-740
               

               
Cow position:
               
chr15:362959-363575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
136-736
               

               
Cow position:
               
chr15:6530898-6530274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 42
               

               
Conread position:
               
143-327
               

               
Cow position:
               
chr15:34751044-34751230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
144-327
               

               
Cow position:
               
chr15:25650454-25650276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
144-472
               

               
Cow position:
               
chr15:49257824-49258176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
148, 9
               

               
Conread position:
               
144-572
               

               
Cow position:
               
chr15:42789190-42788764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
148, 19
               

               
Conread position:
               
148-515
               

               
Cow position:
               
chr15:29604738-29604376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
191, 28
               

               
Conread position:
               
150-740
               

               
Cow position:
               
chr15:15880890-15881487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 27
               

               
Conread position:
               
155-559
               

               
Cow position:
               
chr15:16307390-16307802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 9
               

               
Conread position:
               
156-727
               

               
Cow position:
               
chr15:20351801-20352397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 15
               

               
Conread position:
               
159-737
               

               
Cow position:
               
chr15:34207216-34206636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 107
               

               
Conread position:
               
178-540
               

               
Cow position:
               
chr15:29340051-29340429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 274
               

               
Conread position:
               
187-553
               

               
Cow position:
               
chr15:4093934-4093545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 321
               

               
Conread position:
               
197-700
               

               
Cow position:
               
chr15:27863316-27862805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 12
               

               
Conread position:
               
208-649
               

               
Cow position:
               
chr15:47280119-47279679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
92, 245
               

               
Conread position:
               
209-528
               

               
Cow position:
               
chr15:37931738-37931415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
62, 46
               

               
Conread position:
               
211-429
               

               
Cow position:
               
chr15:6905100-6905317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
89, 7
               

               
Conread position:
               
211-470
               

               
Cow position:
               
chr15:24128054-24128327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
211-530
               

               
Cow position:
               
chr15:23768234-23767909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
97, 223
               

               
Conread position:
               
211-584
               

               
Cow position:
               
chr15:13515389-13515780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 296
               

               
Conread position:
               
211-693
               

               
Cow position:
               
chr15:18017952-18018449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
90, 53
               

               
Conread position:
               
211-710
               

               
Cow position:
               
chr15:18720337-18720852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 67
               

               
Conread position:
               
211-736
               

               
Cow position:
               
chr15:24045077-24044528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 291
               

               
Conread position:
               
211-736
               

               
Cow position:
               
chr15:41360927-41360399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 135
               

               
Conread position:
               
213-531
               

               
Cow position:
               
chr15:9928384-9928713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
213-613
               

               
Cow position:
               
chr15:13387102-13387520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
213-635
               

               
Cow position:
               
chr15:27732436-27732860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
213-736
               

               
Cow position:
               
chr15:2929161-2928648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
214-551
               

               
Cow position:
               
chr15:26404309-26404647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
215-590
               

               
Cow position:
               
chr15:27280898-27281279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 218
               

               
Conread position:
               
216-485
               

               
Cow position:
               
chr15:19908558-19908824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
117, 80
               

               
Conread position:
               
217-503
               

               
Cow position:
               
chr15:5632710-5633001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
225-451
               

               
Cow position:
               
chr15:38877267-38877025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
75, 158
               

               
Conread position:
               
226-530
               

               
Cow position:
               
chr15:30820799-30820479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
230-528
               

               
Cow position:
               
chr15:36782283-36781982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
66, 208
               

               
Conread position:
               
247-581
               

               
Cow position:
               
chr15:23487109-23486765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
332-528
               

               
Cow position:
               
chr15:41620030-41619832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 155
               

               
Conread position:
               
338-530
               

               
Cow position:
               
chr15:4535075-4535263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
338-557
               

               
Cow position:
               
chr15:36621577-36621803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
338-740
               

               
Cow position:
               
chr15:9871249-9870838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 151
               

               
Conread position:
               
339-518
               

               
Cow position:
               
chr15:6586551-6586369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
89, 149
               

               
Conread position:
               
339-531
               

               
Cow position:
               
chr15:40009485-40009293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
62, 146
               

               
Conread position:
               
339-550
               

               
Cow position:
               
chr15:11363012-11362802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
187, 91
               

               
Conread position:
               
339-596
               

               
Cow position:
               
chr15:40999903-40999629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
93, 156
               

               
Conread position:
               
339-736
               

               
Cow position:
               
chr15:22168223-22168627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
339-737
               

               
Cow position:
               
chr15:15707945-15707553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 74
               

               
Conread position:
               
339-737
               

               
Cow position:
               
chr15:18206347-18205952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 146
               

               
Conread position:
               
339-740
               

               
Cow position:
               
chr15:41583076-41583483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 145
               

               
Conread position:
               
340-733
               

               
Cow position:
               
chr15:24822212-24821817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 148
               

               
Conread position:
               
370-754
               

               
Cow position:
               
chr15:9038134-9038526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 5
               
Show alignments to all cow chromosomes.