Cow genome map
| Conread name: | Lng1-LNG010075F05 |
| Conread position: | 57-259 |
| Cow position: | chr13:40805468-40805256 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 192 |
| Conread position: | 57-507 |
| Cow position: | chr13:15348263-15347811 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 58-443 |
| Cow position: | chr13:30324637-30325035 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 100 |
| Conread position: | 58-504 |
| Cow position: | chr13:33006752-33006325 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 31 |
| Conread position: | 63-200 |
| Cow position: | chr13:52693038-52693178 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 63-225 |
| Cow position: | chr13:50785313-50785147 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 63-314 |
| Cow position: | chr13:27505386-27505636 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 184 |
| Conread position: | 65-438 |
| Cow position: | chr13:34189604-34189979 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 82 |
| Conread position: | 67-455 |
| Cow position: | chr13:6063561-6063184 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 118 |
| Conread position: | 67-485 |
| Cow position: | chr13:22109485-22109086 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 292 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 121, 15 |
| Conread position: | 67-516 |
| Cow position: | chr13:52328567-52329006 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 117 |
| Conread position: | 68-302 |
| Cow position: | chr13:2188511-2188276 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 69-367 |
| Cow position: | chr13:5249261-5249552 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 137 |
| Conread position: | 69-414 |
| Cow position: | chr13:14917421-14917761 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 70-348 |
| Cow position: | chr13:31437708-31437431 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 118, 47 |
| Conread position: | 70-371 |
| Cow position: | chr13:8427321-8427624 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 117, 55 |
| Conread position: | 70-438 |
| Cow position: | chr13:50117677-50117303 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 170 |
| Conread position: | 71-270 |
| Cow position: | chr13:14025115-14024915 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 116, 55 |
| Conread position: | 71-376 |
| Cow position: | chr13:13559307-13559601 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 71-400 |
| Cow position: | chr13:26324562-26324886 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 157 |
| Conread position: | 71-418 |
| Cow position: | chr13:722538-722879 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 71-435 |
| Cow position: | chr13:15310782-15310413 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 180 |
| Conread position: | 71-479 |
| Cow position: | chr13:2780496-2780902 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 175 |
| Conread position: | 72-254 |
| Cow position: | chr13:43784324-43784140 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 63, 166 |
| Conread position: | 72-361 |
| Cow position: | chr13:1902017-1902301 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 46, 165 |
| Conread position: | 72-419 |
| Cow position: | chr13:4802329-4802658 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 72-478 |
| Cow position: | chr13:18860069-18860478 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 72-492 |
| Cow position: | chr13:14574183-14574609 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 177 |
| Conread position: | 72-528 |
| Cow position: | chr13:41691189-41690742 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 166 |
| Conread position: | 73-398 |
| Cow position: | chr13:50813805-50813475 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 172 |
| Conread position: | 73-433 |
| Cow position: | chr13:36820640-36820279 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 73-448 |
| Cow position: | chr13:47665352-47665726 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 271 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 136, 38 |
| Conread position: | 73-461 |
| Cow position: | chr13:54409537-54409140 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 163 |
| Conread position: | 73-480 |
| Cow position: | chr13:17121187-17121597 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 172 |
| Conread position: | 74-438 |
| Cow position: | chr13:42101531-42101900 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 169 |
| Conread position: | 74-438 |
| Cow position: | chr13:42124636-42124272 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 74-485 |
| Cow position: | chr13:22170179-22169787 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 114, 8 |
| Conread position: | 75-461 |
| Cow position: | chr13:50786966-50787352 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 167 |
| Conread position: | 78-400 |
| Cow position: | chr13:22108596-22108283 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 106 |
| Conread position: | 78-409 |
| Cow position: | chr13:22169323-22169007 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 57, 106 |
| Conread position: | 91-467 |
| Cow position: | chr13:26005427-26005051 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 143 |
| Conread position: | 94-455 |
| Cow position: | chr13:52184417-52184045 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 97-504 |
| Cow position: | chr13:52851959-52852368 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 145 |
| Conread position: | 145-512 |
| Cow position: | chr13:60240254-60239894 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 92 |
| Conread position: | 147-461 |
| Cow position: | chr13:49454529-49454219 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 96 |
| Conread position: | 206-429 |
| Cow position: | chr13:47305264-47305055 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 217, 32 |
| Conread position: | 209-461 |
| Cow position: | chr13:54345986-54346232 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 215-478 |
| Cow position: | chr13:52693333-52693580 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 243-504 |
| Cow position: | chr13:10003188-10002930 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 252-497 |
| Cow position: | chr13:50784995-50784752 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 155, 13 |
| Conread position: | 261-441 |
| Cow position: | chr13:56227038-56227225 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 154 |
Show alignments to all cow chromosomes.