Cow genome map
| Conread name: | Lng1-LNG010075F05 |
| Conread position: | 50-269 |
| Cow position: | chr21:42375505-42375285 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 80, 107 |
| Conread position: | 55-314 |
| Cow position: | chr21:5923815-5924077 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 9 |
| Conread position: | 55-422 |
| Cow position: | chr21:30925751-30926110 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 23 |
| Conread position: | 58-443 |
| Cow position: | chr21:42074508-42074895 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 64-489 |
| Cow position: | chr21:17215612-17215196 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 67-448 |
| Cow position: | chr21:42596251-42595869 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 177 |
| Conread position: | 69-221 |
| Cow position: | chr21:33270935-33270782 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 87 |
| Conread position: | 69-469 |
| Cow position: | chr21:6605899-6606302 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 96 |
| Conread position: | 70-293 |
| Cow position: | chr21:10418660-10418434 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 99, 173 |
| Conread position: | 70-456 |
| Cow position: | chr21:10275985-10275597 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 55 |
| Conread position: | 70-478 |
| Cow position: | chr21:32040139-32040541 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 175 |
| Conread position: | 71-272 |
| Cow position: | chr21:9876358-9876157 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 86 |
| Conread position: | 71-391 |
| Cow position: | chr21:25335200-25335520 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 71-435 |
| Cow position: | chr21:39145576-39145208 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 172 |
| Conread position: | 71-435 |
| Cow position: | chr21:47459262-47458896 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 98, 170 |
| Conread position: | 71-479 |
| Cow position: | chr21:40698547-40698136 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 172 |
| Conread position: | 71-479 |
| Cow position: | chr21:45811457-45811873 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 81 |
| Conread position: | 71-504 |
| Cow position: | chr21:41139853-41140286 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 146 |
| Conread position: | 72-434 |
| Cow position: | chr21:12410515-12410154 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 72-436 |
| Cow position: | chr21:14478204-14478564 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 150, 85 |
| Conread position: | 72-443 |
| Cow position: | chr21:35555877-35555512 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 172 |
| Conread position: | 72-455 |
| Cow position: | chr21:958664-958283 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 102 |
| Conread position: | 72-455 |
| Cow position: | chr21:8515967-8515585 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 80 |
| Conread position: | 72-485 |
| Cow position: | chr21:37260230-37260635 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 45 |
| Conread position: | 72-510 |
| Cow position: | chr21:41561460-41561032 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 73-316 |
| Cow position: | chr21:23278000-23277755 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 8, 175 |
| Conread position: | 73-391 |
| Cow position: | chr21:37348452-37348780 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 10, 176 |
| Conread position: | 73-438 |
| Cow position: | chr21:2832401-2832772 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 172 |
| Conread position: | 73-445 |
| Cow position: | chr21:41501889-41502258 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 89 |
| Conread position: | 73-461 |
| Cow position: | chr21:163168-162777 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 119, 170 |
| Conread position: | 73-478 |
| Cow position: | chr21:49691248-49690841 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 173 |
| Conread position: | 74-420 |
| Cow position: | chr21:7075531-7075178 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 174 |
| Conread position: | 74-456 |
| Cow position: | chr21:36008688-36008321 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 40, 114 |
| Conread position: | 75-313 |
| Cow position: | chr21:39667004-39666762 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 8, 168 |
| Conread position: | 75-473 |
| Cow position: | chr21:18468599-18468999 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 175 |
| Conread position: | 82-479 |
| Cow position: | chr21:13361311-13360916 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 95-448 |
| Cow position: | chr21:9200150-9199792 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 104-448 |
| Cow position: | chr21:18540957-18540625 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 70, 139 |
| Conread position: | 115-495 |
| Cow position: | chr21:32920157-32919766 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 127 |
| Conread position: | 128-461 |
| Cow position: | chr21:19573028-19572699 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 116 |
| Conread position: | 146-418 |
| Cow position: | chr21:372540-372812 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 42, 98 |
| Conread position: | 161-456 |
| Cow position: | chr21:48538271-48537972 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 208-503 |
| Cow position: | chr21:41535849-41536134 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 210-466 |
| Cow position: | chr21:44558647-44558899 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 247, 25 |
| Conread position: | 218-504 |
| Cow position: | chr21:35743990-35744268 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 221-488 |
| Cow position: | chr21:19671597-19671342 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 237, 14 |
| Conread position: | 243-448 |
| Cow position: | chr21:9013941-9013738 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 244-503 |
| Cow position: | chr21:8941273-8941535 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 217, 9 |
| Conread position: | 252-479 |
| Cow position: | chr21:49689036-49689256 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 308-448 |
| Cow position: | chr21:19934302-19934161 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.