Cow genome map
| Conread name: | Lng1-LNG010075F05 |
| Conread position: | 49-420 |
| Cow position: | chr3:9770202-9770551 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 156, 31 |
| Conread position: | 51-361 |
| Cow position: | chr3:65534771-65535077 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 54-443 |
| Cow position: | chr3:1902004-1902401 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 57-221 |
| Cow position: | chr3:71704134-71703971 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 57-448 |
| Cow position: | chr3:79067037-79067427 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 58 |
| Conread position: | 59-487 |
| Cow position: | chr3:63152002-63151561 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 21 |
| Conread position: | 63-377 |
| Cow position: | chr3:23630706-23630394 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 72, 180 |
| Conread position: | 65-451 |
| Cow position: | chr3:8147101-8146713 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 175 |
| Conread position: | 66-416 |
| Cow position: | chr3:75055992-75055653 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 38 |
| Conread position: | 67-454 |
| Cow position: | chr3:81222114-81222506 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 170 |
| Conread position: | 68-303 |
| Cow position: | chr3:20059228-20059467 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 176 |
| Conread position: | 69-302 |
| Cow position: | chr3:23187124-23187372 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 81, 185 |
| Conread position: | 69-435 |
| Cow position: | chr3:14039060-14038697 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 106 |
| Conread position: | 70-286 |
| Cow position: | chr3:8464148-8464356 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 113, 65 |
| Conread position: | 70-286 |
| Cow position: | chr3:83981119-83980901 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 117, 164 |
| Conread position: | 70-308 |
| Cow position: | chr3:6559443-6559197 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 178 |
| Conread position: | 70-357 |
| Cow position: | chr3:58190090-58189810 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 56 |
| Conread position: | 70-410 |
| Cow position: | chr3:6591375-6591725 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 70-455 |
| Cow position: | chr3:16574398-16574787 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 174 |
| Conread position: | 71-221 |
| Cow position: | chr3:48971479-48971332 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 71-304 |
| Cow position: | chr3:67829134-67828902 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 70 |
| Conread position: | 71-306 |
| Cow position: | chr3:20061923-20062158 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 163 |
| Conread position: | 71-384 |
| Cow position: | chr3:52852281-52851962 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 55 |
| Conread position: | 71-441 |
| Cow position: | chr3:31110142-31110515 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 173 |
| Conread position: | 71-467 |
| Cow position: | chr3:32579068-32578673 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 177 |
| Conread position: | 71-496 |
| Cow position: | chr3:63998002-63998432 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 181 |
| Conread position: | 72-202 |
| Cow position: | chr3:665049-665179 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-223 |
| Cow position: | chr3:53910501-53910655 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 95 |
| Conread position: | 72-236 |
| Cow position: | chr3:6770268-6770095 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 75 |
| Conread position: | 72-391 |
| Cow position: | chr3:4333269-4332941 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 9, 180 |
| Conread position: | 72-438 |
| Cow position: | chr3:14184599-14184230 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 172 |
| Conread position: | 72-439 |
| Cow position: | chr3:44095147-44095508 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 164 |
| Conread position: | 72-448 |
| Cow position: | chr3:72884638-72885020 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 172 |
| Conread position: | 72-462 |
| Cow position: | chr3:25695359-25695749 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 47 |
| Conread position: | 72-465 |
| Cow position: | chr3:9233555-9233178 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 171 |
| Conread position: | 72-492 |
| Cow position: | chr3:32246656-32246237 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 160 |
| Conread position: | 73-276 |
| Cow position: | chr3:8708862-8708658 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 48, 112 |
| Conread position: | 73-361 |
| Cow position: | chr3:2307974-2308263 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 47, 170 |
| Conread position: | 73-467 |
| Cow position: | chr3:23178373-23178770 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 170 |
| Conread position: | 73-479 |
| Cow position: | chr3:79071256-79070869 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 93 |
| Conread position: | 74-316 |
| Cow position: | chr3:48244274-48244036 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 113, 170 |
| Conread position: | 78-380 |
| Cow position: | chr3:45948636-45948933 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 87-273 |
| Cow position: | chr3:53211014-53211203 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 156 |
| Conread position: | 89-303 |
| Cow position: | chr3:4446420-4446204 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 98, 138 |
| Conread position: | 89-386 |
| Cow position: | chr3:60787864-60788160 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 91-504 |
| Cow position: | chr3:11952346-11951927 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 153 |
| Conread position: | 95-448 |
| Cow position: | chr3:78095999-78096342 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 52 |
| Conread position: | 128-454 |
| Cow position: | chr3:44090758-44090443 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 133-511 |
| Cow position: | chr3:17615608-17615968 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 136 |
| Conread position: | 134-322 |
| Cow position: | chr3:81080843-81080654 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 53, 106 |
| Conread position: | 161-501 |
| Cow position: | chr3:83458862-83459203 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 81 |
| Conread position: | 164-386 |
| Cow position: | chr3:21839866-21840083 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 186-497 |
| Cow position: | chr3:8435604-8435287 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 214-504 |
| Cow position: | chr3:53910824-53911111 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 158 |
| Conread position: | 216-461 |
| Cow position: | chr3:665216-665465 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 243-357 |
| Cow position: | chr3:3709634-3709520 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 243-435 |
| Cow position: | chr3:6769940-6769750 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 155 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 145, 153 |
| Conread position: | 243-474 |
| Cow position: | chr3:69279951-69279719 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 252-435 |
| Cow position: | chr3:53210683-53210502 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 138, 17 |
| Conread position: | 255-458 |
| Cow position: | chr3:28595681-28595486 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 170, 6 |
| Conread position: | 256-386 |
| Cow position: | chr3:67537652-67537522 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 289-435 |
| Cow position: | chr3:6559182-6559039 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 290-504 |
| Cow position: | chr3:83980686-83980477 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 133, 90 |
| Conread position: | 319-486 |
| Cow position: | chr3:6736303-6736468 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 104 |
Show alignments to all cow chromosomes.