Cow genome map
| Conread name: | Lng1-LNG010075F05 |
| Conread position: | 40-390 |
| Cow position: | chr5:43483779-43484138 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 57-230 |
| Cow position: | chr5:39083811-39083985 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 130, 23 |
| Conread position: | 62-467 |
| Cow position: | chr5:49879478-49879074 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 20 |
| Conread position: | 63-454 |
| Cow position: | chr5:41330331-41330727 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 188 |
| Conread position: | 63-456 |
| Cow position: | chr5:47767630-47768023 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 62 |
| Conread position: | 63-462 |
| Cow position: | chr5:16177036-16177428 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 19 |
| Conread position: | 64-479 |
| Cow position: | chr5:26464571-26464988 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 185 |
| Conread position: | 65-214 |
| Cow position: | chr5:43658997-43658844 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 65-435 |
| Cow position: | chr5:40388335-40388714 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 183 |
| Conread position: | 66-225 |
| Cow position: | chr5:43086999-43087163 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 66-504 |
| Cow position: | chr5:63395679-63395233 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 67-376 |
| Cow position: | chr5:31486540-31486848 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 67-458 |
| Cow position: | chr5:49610199-49609827 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 55 |
| Conread position: | 68-419 |
| Cow position: | chr5:63793485-63793831 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 175 |
| Conread position: | 70-391 |
| Cow position: | chr5:7507150-7507468 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 70-435 |
| Cow position: | chr5:39338888-39338517 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 175 |
| Conread position: | 71-230 |
| Cow position: | chr5:39325145-39324980 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 71-383 |
| Cow position: | chr5:74639262-74638944 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 71-433 |
| Cow position: | chr5:17391421-17391797 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 98, 306 |
| Conread position: | 71-435 |
| Cow position: | chr5:75867043-75866683 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 64, 96 |
| Conread position: | 71-448 |
| Cow position: | chr5:31249622-31249246 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 264 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 43, 172 |
| Conread position: | 71-456 |
| Cow position: | chr5:44696873-44697262 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 173 |
| Conread position: | 71-477 |
| Cow position: | chr5:59118124-59117717 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 177 |
| Conread position: | 71-490 |
| Cow position: | chr5:2188892-2188474 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 91 |
| Conread position: | 71-504 |
| Cow position: | chr5:3396404-3396841 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 172 |
| Conread position: | 72-304 |
| Cow position: | chr5:9886574-9886812 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 63, 174 |
| Conread position: | 72-435 |
| Cow position: | chr5:34025168-34024805 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 72-497 |
| Cow position: | chr5:59457649-59458084 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 73-202 |
| Cow position: | chr5:60921807-60921937 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 73-504 |
| Cow position: | chr5:42709597-42710007 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 151 |
| Conread position: | 74-347 |
| Cow position: | chr5:61774001-61773723 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 7, 168 |
| Conread position: | 75-409 |
| Cow position: | chr5:47837812-47838151 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 169 |
| Conread position: | 86-398 |
| Cow position: | chr5:42140311-42140618 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 23, 40 |
| Conread position: | 89-479 |
| Cow position: | chr5:47460213-47459825 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 156 |
| Conread position: | 92-279 |
| Cow position: | chr5:51247799-51247614 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 92-479 |
| Cow position: | chr5:39323591-39323204 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 150 |
| Conread position: | 94-492 |
| Cow position: | chr5:63252128-63252524 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 281 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 56, 31 |
| Conread position: | 96-311 |
| Cow position: | chr5:59099341-59099561 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 73, 134 |
| Conread position: | 96-438 |
| Cow position: | chr5:59044774-59045115 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 137 |
| Conread position: | 99-455 |
| Cow position: | chr5:6390591-6390948 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 132 |
| Conread position: | 121-349 |
| Cow position: | chr5:66584304-66584534 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 111 |
| Conread position: | 134-356 |
| Cow position: | chr5:43401067-43401285 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 108 |
| Conread position: | 143-490 |
| Cow position: | chr5:45565275-45564919 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 188-391 |
| Cow position: | chr5:8132909-8132707 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 214-487 |
| Cow position: | chr5:9520334-9520595 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 190, 21 |
| Conread position: | 214-487 |
| Cow position: | chr5:43087170-43087441 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 218-500 |
| Cow position: | chr5:60922197-60922477 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 243-481 |
| Cow position: | chr5:63078313-63078543 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 243-496 |
| Cow position: | chr5:43658795-43658537 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 162, 22 |
| Conread position: | 244-405 |
| Cow position: | chr5:51822756-51822594 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 253-438 |
| Cow position: | chr5:59053384-59053569 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-504 |
| Cow position: | chr5:47837054-47836815 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 161, 27 |
| Conread position: | 279-456 |
| Cow position: | chr5:20848256-20848078 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 110, 117 |
| Conread position: | 324-442 |
| Cow position: | chr5:39085081-39085203 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.