Cow genome map
| Conread name: | Lng1-LNG010075F05 |
| Conread position: | 55-461 |
| Cow position: | chr6:62583358-62582951 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 9 |
| Conread position: | 63-438 |
| Cow position: | chr6:61409807-61410179 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 95 |
| Conread position: | 63-455 |
| Cow position: | chr6:417611-418005 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 67-221 |
| Cow position: | chr6:38404370-38404211 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 67-389 |
| Cow position: | chr6:40836770-40837093 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 101, 50 |
| Conread position: | 67-436 |
| Cow position: | chr6:59219007-59218632 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 183 |
| Conread position: | 68-420 |
| Cow position: | chr6:28440954-28440609 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 32 |
| Conread position: | 69-169 |
| Cow position: | chr6:60415195-60415095 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-464 |
| Cow position: | chr6:44610378-44609989 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 271 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 81, 16 |
| Conread position: | 69-504 |
| Cow position: | chr6:26637670-26638097 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 176 |
| Conread position: | 70-207 |
| Cow position: | chr6:16184203-16184343 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 70-342 |
| Cow position: | chr6:28598303-28598575 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 138, 167 |
| Conread position: | 70-392 |
| Cow position: | chr6:45659899-45660214 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 71-236 |
| Cow position: | chr6:33323495-33323666 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 71-295 |
| Cow position: | chr6:34101110-34101338 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 173 |
| Conread position: | 71-401 |
| Cow position: | chr6:22817557-22817885 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 71-414 |
| Cow position: | chr6:65706168-65706514 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 98, 172 |
| Conread position: | 71-418 |
| Cow position: | chr6:55972682-55972338 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 91 |
| Conread position: | 71-420 |
| Cow position: | chr6:63029125-63028775 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 54 |
| Conread position: | 71-448 |
| Cow position: | chr6:20284910-20284545 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 64, 85 |
| Conread position: | 71-456 |
| Cow position: | chr6:15264513-15264893 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 126 |
| Conread position: | 71-459 |
| Cow position: | chr6:55503482-55503095 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 174 |
| Conread position: | 71-469 |
| Cow position: | chr6:29838929-29838528 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 174 |
| Conread position: | 71-477 |
| Cow position: | chr6:1055576-1055983 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 181 |
| Conread position: | 71-477 |
| Cow position: | chr6:43603061-43603474 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 54 |
| Conread position: | 71-504 |
| Cow position: | chr6:35751179-35751608 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 85 |
| Conread position: | 71-517 |
| Cow position: | chr6:29678694-29679153 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 323 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 72-306 |
| Cow position: | chr6:44674908-44674682 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 69, 43 |
| Conread position: | 72-448 |
| Cow position: | chr6:17291418-17291797 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 173 |
| Conread position: | 72-464 |
| Cow position: | chr6:44757681-44758081 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 177 |
| Conread position: | 72-484 |
| Cow position: | chr6:69035114-69035521 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 69, 204 |
| Conread position: | 72-487 |
| Cow position: | chr6:50855850-50856269 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 177 |
| Conread position: | 72-487 |
| Cow position: | chr6:63012194-63011796 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 351, 145 |
| Conread position: | 72-490 |
| Cow position: | chr6:2592565-2592963 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 57 |
| Conread position: | 72-490 |
| Cow position: | chr6:61811687-61811300 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 72-504 |
| Cow position: | chr6:35187821-35187390 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 166 |
| Conread position: | 73-221 |
| Cow position: | chr6:16611532-16611683 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 73-391 |
| Cow position: | chr6:67981347-67981670 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 33 |
| Conread position: | 73-392 |
| Cow position: | chr6:51395891-51396216 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 160 |
| Conread position: | 73-435 |
| Cow position: | chr6:16551936-16552305 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 172 |
| Conread position: | 73-463 |
| Cow position: | chr6:4387751-4387352 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 73-495 |
| Cow position: | chr6:18413983-18414411 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 160 |
| Conread position: | 75-475 |
| Cow position: | chr6:69053777-69054193 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 186 |
| Conread position: | 82-278 |
| Cow position: | chr6:373985-374176 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 82-456 |
| Cow position: | chr6:32687858-32688230 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 36 |
| Conread position: | 83-356 |
| Cow position: | chr6:61130964-61130692 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 42, 154 |
| Conread position: | 97-505 |
| Cow position: | chr6:5338323-5338751 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 146 |
| Conread position: | 120-384 |
| Cow position: | chr6:3140929-3141194 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 143-477 |
| Cow position: | chr6:68263490-68263825 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 146-493 |
| Cow position: | chr6:60415088-60414753 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 179-488 |
| Cow position: | chr6:24186805-24186508 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 210-391 |
| Cow position: | chr6:8957204-8957029 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 240-479 |
| Cow position: | chr6:48211893-48212129 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 156, 181 |
| Conread position: | 243-487 |
| Cow position: | chr6:16184403-16184639 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 271-439 |
| Cow position: | chr6:53264546-53264372 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 63, 138 |
Show alignments to all cow chromosomes.