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Cow genome map

           
Conread name:
           
Lng1-LNG010084D02
        

               
Conread position:
               
247-505
               

               
Cow position:
               
chrX:44123545-44123293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
267-535
               

               
Cow position:
               
chrX:26205175-26205440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
14, 85
               

               
Conread position:
               
271-674
               

               
Cow position:
               
chrX:30962599-30962996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 192
               

               
Conread position:
               
276-557
               

               
Cow position:
               
chrX:11762745-11763014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
262, 13
               

               
Conread position:
               
278-654
               

               
Cow position:
               
chrX:12290981-12290624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 15
               

               
Conread position:
               
279-674
               

               
Cow position:
               
chrX:23563523-23563915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 184
               

               
Conread position:
               
281-507
               

               
Cow position:
               
chrX:11517718-11517944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
106, 10
               

               
Conread position:
               
282-545
               

               
Cow position:
               
chrX:42480087-42479833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
284-516
               

               
Cow position:
               
chrX:11454432-11454213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
285-450
               

               
Cow position:
               
chrX:35390503-35390671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
285-647
               

               
Cow position:
               
chrX:12095510-12095873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 176
               

               
Conread position:
               
285-674
               

               
Cow position:
               
chrX:29724010-29723619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 139
               

               
Conread position:
               
286-536
               

               
Cow position:
               
chrX:35659053-35658807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
287-513
               

               
Cow position:
               
chrX:9063384-9063155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
287-513
               

               
Cow position:
               
chrX:30958984-30958756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
95, 59
               

               
Conread position:
               
287-555
               

               
Cow position:
               
chrX:38968149-38967877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
97, 10
               

               
Conread position:
               
287-584
               

               
Cow position:
               
chrX:27306697-27306415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 91
               

               
Conread position:
               
287-674
               

               
Cow position:
               
chrX:11843981-11844369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
287-679
               

               
Cow position:
               
chrX:46291397-46291013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
288-671
               

               
Cow position:
               
chrX:20584564-20584205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 25
               

               
Conread position:
               
288-674
               

               
Cow position:
               
chrX:20677621-20677250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
25, 49
               

               
Conread position:
               
289-480
               

               
Cow position:
               
chrX:11529592-11529406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
289-492
               

               
Cow position:
               
chrX:41011144-41010949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
289-503
               

               
Cow position:
               
chrX:14951098-14951313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
289-503
               

               
Cow position:
               
chrX:19203090-19203306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 168
               

               
Conread position:
               
290-674
               

               
Cow position:
               
chrX:4632598-4632974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 173
               

               
Conread position:
               
290-674
               

               
Cow position:
               
chrX:15146940-15147311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
290-674
               

               
Cow position:
               
chrX:37956101-37955711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 59
               

               
Conread position:
               
291-529
               

               
Cow position:
               
chrX:35392051-35392280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
291-673
               

               
Cow position:
               
chrX:869930-870291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
100, 117
               

               
Conread position:
               
291-674
               

               
Cow position:
               
chrX:26493258-26492884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
90, 29
               

               
Conread position:
               
291-674
               

               
Cow position:
               
chrX:32420462-32420096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
106, 37
               

               
Conread position:
               
292-515
               

               
Cow position:
               
chrX:42331523-42331312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
292-622
               

               
Cow position:
               
chrX:25815649-25815981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 23
               

               
Conread position:
               
292-663
               

               
Cow position:
               
chrX:17949242-17949601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
292-668
               

               
Cow position:
               
chrX:46588070-46587701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 23
               

               
Conread position:
               
292-670
               

               
Cow position:
               
chrX:41790176-41790562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
105, 167
               

               
Conread position:
               
292-674
               

               
Cow position:
               
chrX:4268819-4269189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 112
               

               
Conread position:
               
292-674
               

               
Cow position:
               
chrX:27945800-27946181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
293-450
               

               
Cow position:
               
chrX:35509430-35509591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
293-495
               

               
Cow position:
               
chrX:37867502-37867301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
293-505
               

               
Cow position:
               
chrX:41435293-41435511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
88, 25
               

               
Conread position:
               
293-508
               

               
Cow position:
               
chrX:41453551-41453337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
24, 166
               

               
Conread position:
               
293-561
               

               
Cow position:
               
chrX:26843015-26843283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 166
               

               
Conread position:
               
293-607
               

               
Cow position:
               
chrX:39353022-39352720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
212, 89
               

               
Conread position:
               
293-609
               

               
Cow position:
               
chrX:4152791-4153097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
293-662
               

               
Cow position:
               
chrX:17231985-17231621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 21
               

               
Conread position:
               
293-670
               

               
Cow position:
               
chrX:27446933-27446572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 161
               

               
Conread position:
               
293-673
               

               
Cow position:
               
chrX:25207610-25207964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 155
               

               
Conread position:
               
293-674
               

               
Cow position:
               
chrX:44055052-44054679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
294-495
               

               
Cow position:
               
chrX:10415001-10415205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
12, 166
               

               
Conread position:
               
294-499
               

               
Cow position:
               
chrX:18030169-18030373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
294-505
               

               
Cow position:
               
chrX:13322183-13321972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
87, 135
               

               
Conread position:
               
294-515
               

               
Cow position:
               
chrX:45139681-45139904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 165
               

               
Conread position:
               
294-524
               

               
Cow position:
               
chrX:19356711-19356489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
294-632
               

               
Cow position:
               
chrX:20881710-20882022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
16, 94
               

               
Conread position:
               
294-671
               

               
Cow position:
               
chrX:4512495-4512115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 130
               

               
Conread position:
               
294-674
               

               
Cow position:
               
chrX:6544492-6544134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
294-674
               

               
Cow position:
               
chrX:18204217-18204585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
294-674
               

               
Cow position:
               
chrX:34441205-34441574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 21
               

               
Conread position:
               
295-395
               

               
Cow position:
               
chrX:32590156-32590257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
295-450
               

               
Cow position:
               
chrX:1571348-1571501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 10
               

               
Conread position:
               
295-452
               

               
Cow position:
               
chrX:11670933-11670772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
295-484
               

               
Cow position:
               
chrX:26881831-26882021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
89, 163
               

               
Conread position:
               
295-497
               

               
Cow position:
               
chrX:19000376-19000172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 162
               

               
Conread position:
               
295-503
               

               
Cow position:
               
chrX:35409998-35409792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 19
               

               
Conread position:
               
295-504
               

               
Cow position:
               
chrX:3606129-3605919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 164
               

               
Conread position:
               
295-504
               

               
Cow position:
               
chrX:20666652-20666862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
295-512
               

               
Cow position:
               
chrX:39427049-39427268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 164
               

               
Conread position:
               
295-515
               

               
Cow position:
               
chrX:46910055-46909843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
295-536
               

               
Cow position:
               
chrX:1719350-1719122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
295-548
               

               
Cow position:
               
chrX:34420982-34420731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
90, 20
               

               
Conread position:
               
295-580
               

               
Cow position:
               
chrX:41941871-41941593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 78
               

               
Conread position:
               
295-585
               

               
Cow position:
               
chrX:48198401-48198684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 20
               

               
Conread position:
               
295-585
               

               
Cow position:
               
chrX:48474152-48473870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
295-603
               

               
Cow position:
               
chrX:30579-30273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
295-610
               

               
Cow position:
               
chrX:2674711-2675020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
86, 20
               

               
Conread position:
               
295-610
               

               
Cow position:
               
chrX:43008858-43008536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
89, 166
               

               
Conread position:
               
295-615
               

               
Cow position:
               
chrX:5134723-5134404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
12, 158
               

               
Conread position:
               
295-615
               

               
Cow position:
               
chrX:27460117-27459788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 166
               

               
Conread position:
               
295-621
               

               
Cow position:
               
chrX:13924108-13923798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
91, 23
               

               
Conread position:
               
295-642
               

               
Cow position:
               
chrX:48071410-48071068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
94, 163
               

               
Conread position:
               
295-665
               

               
Cow position:
               
chrX:9650783-9651138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 23
               

               
Conread position:
               
295-666
               

               
Cow position:
               
chrX:27508776-27509134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 146
               

               
Conread position:
               
295-667
               

               
Cow position:
               
chrX:35885487-35885845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 18
               

               
Conread position:
               
295-668
               

               
Cow position:
               
chrX:44656715-44657079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 25
               

               
Conread position:
               
295-670
               

               
Cow position:
               
chrX:17795227-17794867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
5, 25
               

               
Conread position:
               
295-674
               

               
Cow position:
               
chrX:27431677-27432036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
95, 23
               

               
Conread position:
               
295-674
               

               
Cow position:
               
chrX:38935528-38935163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
13, 139
               

               
Conread position:
               
295-674
               

               
Cow position:
               
chrX:45598355-45598722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
14, 164
               

               
Conread position:
               
295-674
               

               
Cow position:
               
chrX:47610039-47609684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
6, 165
               

               
Conread position:
               
295-691
               

               
Cow position:
               
chrX:4403565-4403172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
85, 10
               

               
Conread position:
               
296-510
               

               
Cow position:
               
chrX:33020685-33020470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
91, 163
               

               
Conread position:
               
296-511
               

               
Cow position:
               
chrX:14925520-14925308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
89, 162
               

               
Conread position:
               
296-515
               

               
Cow position:
               
chrX:16763683-16763899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
198, 156
               

               
Conread position:
               
296-529
               

               
Cow position:
               
chrX:27145847-27145618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
25, 157
               

               
Conread position:
               
296-531
               

               
Cow position:
               
chrX:37072633-37072401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 153
               

               
Conread position:
               
296-594
               

               
Cow position:
               
chrX:36367688-36367989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
296-626
               

               
Cow position:
               
chrX:36866420-36866092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 143
               

               
Conread position:
               
296-643
               

               
Cow position:
               
chrX:33001145-33000807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 93
               

               
Conread position:
               
296-668
               

               
Cow position:
               
chrX:44192196-44192567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 19
               

               
Conread position:
               
296-670
               

               
Cow position:
               
chrX:34315774-34315407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
70, 167
               

               
Conread position:
               
296-671
               

               
Cow position:
               
chrX:8869157-8869521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
95, 159
               

               
Conread position:
               
296-673
               

               
Cow position:
               
chrX:31948687-31949055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 162
               

               
Conread position:
               
296-674
               

               
Cow position:
               
chrX:34412095-34411722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
83, 163
               

               
Conread position:
               
296-674
               

               
Cow position:
               
chrX:36976193-36975827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
297-453
               

               
Cow position:
               
chrX:42506699-42506864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
297-480
               

               
Cow position:
               
chrX:1938260-1938077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
12, 160
               

               
Conread position:
               
297-480
               

               
Cow position:
               
chrX:40556216-40556396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
297-488
               

               
Cow position:
               
chrX:41199468-41199279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
297-491
               

               
Cow position:
               
chrX:1101798-1101609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
297-491
               

               
Cow position:
               
chrX:4169782-4169979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
297-492
               

               
Cow position:
               
chrX:12989-12801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
297-495
               

               
Cow position:
               
chrX:47100345-47100549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 166
               

               
Conread position:
               
297-497
               

               
Cow position:
               
chrX:26720443-26720638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
297-499
               

               
Cow position:
               
chrX:44225485-44225687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
297-510
               

               
Cow position:
               
chrX:42050023-42050237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
94, 159
               

               
Conread position:
               
297-512
               

               
Cow position:
               
chrX:18439243-18439027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 161
               

               
Conread position:
               
297-514
               

               
Cow position:
               
chrX:24105090-24104868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 166
               

               
Conread position:
               
297-517
               

               
Cow position:
               
chrX:32867119-32866901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 158
               

               
Conread position:
               
297-520
               

               
Cow position:
               
chrX:20345697-20345476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 161
               

               
Conread position:
               
297-528
               

               
Cow position:
               
chrX:8493313-8493081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
297-529
               

               
Cow position:
               
chrX:25049035-25049268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
90, 161
               

               
Conread position:
               
297-535
               

               
Cow position:
               
chrX:4327933-4328175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
14, 123
               

               
Conread position:
               
297-536
               

               
Cow position:
               
chrX:19717757-19717529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
297-545
               

               
Cow position:
               
chrX:16984881-16984641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
297-545
               

               
Cow position:
               
chrX:27668715-27668958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
297-554
               

               
Cow position:
               
chrX:36109368-36109626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 160
               

               
Conread position:
               
297-563
               

               
Cow position:
               
chrX:35276232-35275969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
85, 161
               

               
Conread position:
               
297-597
               

               
Cow position:
               
chrX:11825399-11825690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
94, 17
               

               
Conread position:
               
297-601
               

               
Cow position:
               
chrX:35986064-35985764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
297-609
               

               
Cow position:
               
chrX:23562121-23561799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 158
               

               
Conread position:
               
297-609
               

               
Cow position:
               
chrX:45110897-45110594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
199, 155
               

               
Conread position:
               
297-628
               

               
Cow position:
               
chrX:33800573-33800242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 133
               

               
Conread position:
               
297-645
               

               
Cow position:
               
chrX:43150677-43150326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
88, 126
               

               
Conread position:
               
297-667
               

               
Cow position:
               
chrX:48237064-48236702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
11, 161
               

               
Conread position:
               
297-668
               

               
Cow position:
               
chrX:15546127-15545777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
85, 54
               

               
Conread position:
               
297-668
               

               
Cow position:
               
chrX:43050316-43049945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
85, 149
               

               
Conread position:
               
297-670
               

               
Cow position:
               
chrX:29601579-29601948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 163
               

               
Conread position:
               
297-673
               

               
Cow position:
               
chrX:39938297-39938641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
297-674
               

               
Cow position:
               
chrX:1175744-1176101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
85, 70
               

               
Conread position:
               
297-674
               

               
Cow position:
               
chrX:3580194-3579822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 165
               

               
Conread position:
               
297-674
               

               
Cow position:
               
chrX:16541408-16541796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
21, 164
               

               
Conread position:
               
297-674
               

               
Cow position:
               
chrX:18486053-18485676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 126
               

               
Conread position:
               
297-674
               

               
Cow position:
               
chrX:20887404-20887768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 21
               

               
Conread position:
               
297-674
               

               
Cow position:
               
chrX:21064532-21064161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 164
               

               
Conread position:
               
297-674
               

               
Cow position:
               
chrX:31729682-31729321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
298-445
               

               
Cow position:
               
chrX:42165372-42165521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
298-505
               

               
Cow position:
               
chrX:876602-876804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 71
               

               
Conread position:
               
298-507
               

               
Cow position:
               
chrX:12972923-12972719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
143, 98
               

               
Conread position:
               
298-514
               

               
Cow position:
               
chrX:2314373-2314590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
92, 160
               

               
Conread position:
               
298-520
               

               
Cow position:
               
chrX:597234-597448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
298-535
               

               
Cow position:
               
chrX:4559979-4559747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
88, 160
               

               
Conread position:
               
298-535
               

               
Cow position:
               
chrX:35285420-35285181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
21, 157
               

               
Conread position:
               
298-544
               

               
Cow position:
               
chrX:16836046-16836285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
11, 157
               

               
Conread position:
               
298-564
               

               
Cow position:
               
chrX:42449769-42450033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 17
               

               
Conread position:
               
298-577
               

               
Cow position:
               
chrX:34540928-34540649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
82, 124
               

               
Conread position:
               
298-622
               

               
Cow position:
               
chrX:27442295-27442630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
298-626
               

               
Cow position:
               
chrX:22284086-22283754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 163
               

               
Conread position:
               
298-632
               

               
Cow position:
               
chrX:35590513-35590842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
91, 133
               

               
Conread position:
               
298-670
               

               
Cow position:
               
chrX:31489766-31489392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 158
               

               
Conread position:
               
298-673
               

               
Cow position:
               
chrX:11633927-11633557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 159
               

               
Conread position:
               
299-477
               

               
Cow position:
               
chrX:34193836-34194015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 161
               

               
Conread position:
               
299-508
               

               
Cow position:
               
chrX:34991606-34991399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 154
               

               
Conread position:
               
299-545
               

               
Cow position:
               
chrX:23335732-23335972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
299-556
               

               
Cow position:
               
chrX:30672139-30672411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
299-568
               

               
Cow position:
               
chrX:17966568-17966322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
221, 48
               

               
Conread position:
               
299-612
               

               
Cow position:
               
chrX:127002-126704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
38, 92
               

               
Conread position:
               
299-638
               

               
Cow position:
               
chrX:1466407-1466070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 159
               

               
Conread position:
               
299-671
               

               
Cow position:
               
chrX:7722219-7721870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
299-671
               

               
Cow position:
               
chrX:13177240-13177584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
299-672
               

               
Cow position:
               
chrX:41027408-41027037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 163
               

               
Conread position:
               
299-674
               

               
Cow position:
               
chrX:5118252-5118624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
20, 160
               

               
Conread position:
               
299-674
               

               
Cow position:
               
chrX:34504810-34505169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
300-495
               

               
Cow position:
               
chrX:5487706-5487891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
300-514
               

               
Cow position:
               
chrX:51660-51867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
88, 18
               

               
Conread position:
               
300-515
               

               
Cow position:
               
chrX:44995745-44995526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
16, 160
               

               
Conread position:
               
300-541
               

               
Cow position:
               
chrX:19018585-19018829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
85, 160
               

               
Conread position:
               
300-576
               

               
Cow position:
               
chrX:4289679-4289410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
300-582
               

               
Cow position:
               
chrX:17956933-17956660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 157
               

               
Conread position:
               
300-631
               

               
Cow position:
               
chrX:27261432-27261104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 10
               

               
Conread position:
               
300-668
               

               
Cow position:
               
chrX:24332020-24331662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 158
               

               
Conread position:
               
300-674
               

               
Cow position:
               
chrX:33466865-33466489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
77, 46
               

               
Conread position:
               
300-674
               

               
Cow position:
               
chrX:35224515-35224174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
362, 15
               

               
Conread position:
               
300-674
               

               
Cow position:
               
chrX:35822574-35822220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
100, 49
               

               
Conread position:
               
300-674
               

               
Cow position:
               
chrX:36356347-36355993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 145
               

               
Conread position:
               
301-450
               

               
Cow position:
               
chrX:37717964-37717809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
301-500
               

               
Cow position:
               
chrX:8759865-8759668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
86, 154
               

               
Conread position:
               
301-507
               

               
Cow position:
               
chrX:14135916-14135716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
87, 17
               

               
Conread position:
               
301-544
               

               
Cow position:
               
chrX:24425758-24426005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 158
               

               
Conread position:
               
301-610
               

               
Cow position:
               
chrX:296634-296332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
80, 157
               

               
Conread position:
               
301-621
               

               
Cow position:
               
chrX:40337155-40336824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
19, 157
               

               
Conread position:
               
301-674
               

               
Cow position:
               
chrX:22387001-22387365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
81, 35
               

               
Conread position:
               
301-674
               

               
Cow position:
               
chrX:25035141-25035506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 13
               

               
Conread position:
               
301-675
               

               
Cow position:
               
chrX:27175240-27174872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
302-488
               

               
Cow position:
               
chrX:28107087-28106902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 154
               

               
Conread position:
               
302-513
               

               
Cow position:
               
chrX:37749752-37749953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
302-518
               

               
Cow position:
               
chrX:23358874-23359086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
13, 154
               

               
Conread position:
               
302-584
               

               
Cow position:
               
chrX:24457306-24457590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 156
               

               
Conread position:
               
302-584
               

               
Cow position:
               
chrX:42894165-42893880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 153
               

               
Conread position:
               
302-638
               

               
Cow position:
               
chrX:31250634-31250296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 163
               

               
Conread position:
               
302-665
               

               
Cow position:
               
chrX:38654193-38654543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
176, 16
               

               
Conread position:
               
302-674
               

               
Cow position:
               
chrX:7351547-7351177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 49
               

               
Conread position:
               
302-674
               

               
Cow position:
               
chrX:28632239-28632605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 156
               

               
Conread position:
               
303-585
               

               
Cow position:
               
chrX:44091161-44090885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
303-653
               

               
Cow position:
               
chrX:21328153-21327802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
303-674
               

               
Cow position:
               
chrX:16763009-16762644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
303-674
               

               
Cow position:
               
chrX:22813303-22812942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
304-423
               

               
Cow position:
               
chrX:19161891-19162016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
304-487
               

               
Cow position:
               
chrX:5915430-5915244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 148
               

               
Conread position:
               
304-513
               

               
Cow position:
               
chrX:27416336-27416122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 120
               

               
Conread position:
               
304-536
               

               
Cow position:
               
chrX:1122313-1122536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 19
               

               
Conread position:
               
304-596
               

               
Cow position:
               
chrX:48574886-48574599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
87, 154
               

               
Conread position:
               
304-632
               

               
Cow position:
               
chrX:40680854-40680526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 154
               

               
Conread position:
               
304-670
               

               
Cow position:
               
chrX:28846653-28847000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
304-674
               

               
Cow position:
               
chrX:37489968-37489604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
81, 136
               

               
Conread position:
               
305-437
               

               
Cow position:
               
chrX:38726906-38727037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
305-439
               

               
Cow position:
               
chrX:13135320-13135451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
305-448
               

               
Cow position:
               
chrX:17929236-17929091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
305-453
               

               
Cow position:
               
chrX:1996213-1996367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
305-481
               

               
Cow position:
               
chrX:11589129-11589305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 152
               

               
Conread position:
               
305-503
               

               
Cow position:
               
chrX:45759903-45759711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
58, 11
               

               
Conread position:
               
305-505
               

               
Cow position:
               
chrX:8642283-8642084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
82, 152
               

               
Conread position:
               
305-513
               

               
Cow position:
               
chrX:4092160-4091954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
76, 41
               

               
Conread position:
               
305-529
               

               
Cow position:
               
chrX:20957480-20957252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
22, 156
               

               
Conread position:
               
305-545
               

               
Cow position:
               
chrX:39290596-39290359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
18, 111
               

               
Conread position:
               
305-584
               

               
Cow position:
               
chrX:11325868-11326137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 90
               

               
Conread position:
               
305-584
               

               
Cow position:
               
chrX:48558985-48558710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
12, 59
               

               
Conread position:
               
305-596
               

               
Cow position:
               
chrX:47013162-47013450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 155
               

               
Conread position:
               
305-608
               

               
Cow position:
               
chrX:7648174-7648462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
43, 150
               

               
Conread position:
               
305-618
               

               
Cow position:
               
chrX:13122183-13121859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
15, 159
               

               
Conread position:
               
305-638
               

               
Cow position:
               
chrX:161638-161322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
305-664
               

               
Cow position:
               
chrX:6407780-6407437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
305-664
               

               
Cow position:
               
chrX:28013202-28013560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
305-670
               

               
Cow position:
               
chrX:5679697-5680053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
91, 22
               

               
Conread position:
               
305-674
               

               
Cow position:
               
chrX:4399357-4399007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
15, 110
               

               
Conread position:
               
306-442
               

               
Cow position:
               
chrX:42159180-42159037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
306-493
               

               
Cow position:
               
chrX:9451580-9451395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
9, 133
               

               
Conread position:
               
306-505
               

               
Cow position:
               
chrX:37751874-37752068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
83, 69
               

               
Conread position:
               
306-517
               

               
Cow position:
               
chrX:20583899-20583692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
306-527
               

               
Cow position:
               
chrX:31480203-31479987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 149
               

               
Conread position:
               
306-592
               

               
Cow position:
               
chrX:5063473-5063208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
306-610
               

               
Cow position:
               
chrX:13147221-13146918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 151
               

               
Conread position:
               
306-643
               

               
Cow position:
               
chrX:20168792-20168461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
306-666
               

               
Cow position:
               
chrX:42380875-42381216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
306-670
               

               
Cow position:
               
chrX:38964334-38963987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 69
               

               
Conread position:
               
306-673
               

               
Cow position:
               
chrX:6488802-6488455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
289, 87
               

               
Conread position:
               
306-674
               

               
Cow position:
               
chrX:8917636-8917274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
12, 118
               

               
Conread position:
               
306-674
               

               
Cow position:
               
chrX:46532252-46532628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 157
               

               
Conread position:
               
307-500
               

               
Cow position:
               
chrX:29451309-29451508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
82, 156
               

               
Conread position:
               
307-513
               

               
Cow position:
               
chrX:4612640-4612852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
307-545
               

               
Cow position:
               
chrX:19469279-19469510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
228, 82
               

               
Conread position:
               
307-670
               

               
Cow position:
               
chrX:41238126-41238485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 87
               

               
Conread position:
               
307-674
               

               
Cow position:
               
chrX:21593528-21593165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
307-675
               

               
Cow position:
               
chrX:27705823-27705458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 56
               

               
Conread position:
               
308-543
               

               
Cow position:
               
chrX:35382808-35383032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
308-545
               

               
Cow position:
               
chrX:42836416-42836178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
89, 149
               

               
Conread position:
               
308-579
               

               
Cow position:
               
chrX:36391952-36392220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
310-473
               

               
Cow position:
               
chrX:33678238-33678403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 8
               

               
Conread position:
               
310-481
               

               
Cow position:
               
chrX:22552747-22552917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
76, 8
               

               
Conread position:
               
310-622
               

               
Cow position:
               
chrX:22115081-22115392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
42, 149
               

               
Conread position:
               
310-627
               

               
Cow position:
               
chrX:39220321-39220000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 156
               

               
Conread position:
               
310-674
               

               
Cow position:
               
chrX:31436700-31436356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
310-674
               

               
Cow position:
               
chrX:34554958-34554602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
10, 149
               

               
Conread position:
               
311-517
               

               
Cow position:
               
chrX:7910842-7911046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 9
               

               
Conread position:
               
311-579
               

               
Cow position:
               
chrX:35431010-35431276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
312-400
               

               
Cow position:
               
chrX:38726167-38726079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
89
               

               
Alignm identity:
               
76
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
312-510
               

               
Cow position:
               
chrX:11781675-11781487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
76, 36
               

               
Conread position:
               
312-520
               

               
Cow position:
               
chrX:41454722-41454931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 108
               

               
Conread position:
               
312-534
               

               
Cow position:
               
chrX:44040408-44040190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 146
               

               
Conread position:
               
312-652
               

               
Cow position:
               
chrX:15231428-15231758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
76, 109
               

               
Conread position:
               
312-673
               

               
Cow position:
               
chrX:9425531-9425861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
87, 54
               

               
Conread position:
               
312-674
               

               
Cow position:
               
chrX:36283571-36283227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
75, 115
               

               
Conread position:
               
312-674
               

               
Cow position:
               
chrX:38549678-38549330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 145
               

               
Conread position:
               
313-536
               

               
Cow position:
               
chrX:17524153-17524377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
70, 145
               

               
Conread position:
               
313-643
               

               
Cow position:
               
chrX:34836842-34837150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
314-471
               

               
Cow position:
               
chrX:31279698-31279857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
314-499
               

               
Cow position:
               
chrX:42875438-42875256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
71, 140
               

               
Conread position:
               
314-505
               

               
Cow position:
               
chrX:16555994-16556179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
107, 96
               

               
Conread position:
               
314-609
               

               
Cow position:
               
chrX:4109414-4109128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 144
               

               
Conread position:
               
314-669
               

               
Cow position:
               
chrX:44961984-44961632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
34, 228
               

               
Conread position:
               
314-674
               

               
Cow position:
               
chrX:13913304-13912957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
104, 77
               

               
Conread position:
               
314-674
               

               
Cow position:
               
chrX:34792094-34792429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
213, 32
               

               
Conread position:
               
314-675
               

               
Cow position:
               
chrX:40320637-40320282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
8, 146
               

               
Conread position:
               
315-492
               

               
Cow position:
               
chrX:25925428-25925591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
315-495
               

               
Cow position:
               
chrX:6634573-6634392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 143
               

               
Conread position:
               
315-495
               

               
Cow position:
               
chrX:42461399-42461570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
315-501
               

               
Cow position:
               
chrX:46068536-46068717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
315-507
               

               
Cow position:
               
chrX:1121138-1121331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 146
               

               
Conread position:
               
315-510
               

               
Cow position:
               
chrX:17498551-17498355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
76, 141
               

               
Conread position:
               
315-515
               

               
Cow position:
               
chrX:34398555-34398756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
67, 105
               

               
Conread position:
               
315-516
               

               
Cow position:
               
chrX:1960197-1960398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 145
               

               
Conread position:
               
315-517
               

               
Cow position:
               
chrX:32190944-32191147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 143
               

               
Conread position:
               
315-520
               

               
Cow position:
               
chrX:28068079-28067873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 141
               

               
Conread position:
               
315-520
               

               
Cow position:
               
chrX:28940472-28940265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
78, 134
               

               
Conread position:
               
315-529
               

               
Cow position:
               
chrX:1553198-1552983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 144
               

               
Conread position:
               
315-529
               

               
Cow position:
               
chrX:24335848-24336063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 143
               

               
Conread position:
               
315-529
               

               
Cow position:
               
chrX:26979563-26979775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
76, 35
               

               
Conread position:
               
315-529
               

               
Cow position:
               
chrX:29467554-29467764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
315-529
               

               
Cow position:
               
chrX:40574715-40574928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 143
               

               
Conread position:
               
315-536
               

               
Cow position:
               
chrX:24170497-24170722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
72, 139
               

               
Conread position:
               
315-545
               

               
Cow position:
               
chrX:38587617-38587843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
315-577
               

               
Cow position:
               
chrX:43151923-43152187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 147
               

               
Conread position:
               
315-585
               

               
Cow position:
               
chrX:48532542-48532277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
76, 124
               

               
Conread position:
               
315-603
               

               
Cow position:
               
chrX:12437055-12437326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
247, 60
               

               
Conread position:
               
315-608
               

               
Cow position:
               
chrX:27380588-27380292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 229
               

               
Conread position:
               
315-614
               

               
Cow position:
               
chrX:48004074-48003780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 108
               

               
Conread position:
               
315-619
               

               
Cow position:
               
chrX:25037220-25036915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 143
               

               
Conread position:
               
315-628
               

               
Cow position:
               
chrX:10859085-10859379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
76, 101
               

               
Conread position:
               
315-631
               

               
Cow position:
               
chrX:42855691-42855371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 147
               

               
Conread position:
               
315-654
               

               
Cow position:
               
chrX:24365594-24365929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 137
               

               
Conread position:
               
315-657
               

               
Cow position:
               
chrX:34377167-34376842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 144
               

               
Conread position:
               
315-663
               

               
Cow position:
               
chrX:33654615-33654958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
70, 143
               

               
Conread position:
               
315-668
               

               
Cow position:
               
chrX:40826522-40826871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
66, 143
               

               
Conread position:
               
315-669
               

               
Cow position:
               
chrX:4296596-4296945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
75, 145
               

               
Conread position:
               
315-670
               

               
Cow position:
               
chrX:5637951-5638283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
140, 77
               

               
Conread position:
               
315-670
               

               
Cow position:
               
chrX:42246953-42247303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 143
               

               
Conread position:
               
315-672
               

               
Cow position:
               
chrX:32019905-32020242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
66, 144
               

               
Conread position:
               
315-673
               

               
Cow position:
               
chrX:21642253-21642599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
75, 143
               

               
Conread position:
               
315-673
               

               
Cow position:
               
chrX:48010833-48010477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
76, 143
               

               
Conread position:
               
315-674
               

               
Cow position:
               
chrX:3654831-3654486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 53
               

               
Conread position:
               
315-674
               

               
Cow position:
               
chrX:9251935-9252297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 142
               

               
Conread position:
               
315-674
               

               
Cow position:
               
chrX:20339667-20340010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 32
               

               
Conread position:
               
315-674
               

               
Cow position:
               
chrX:21663523-21663190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 144
               

               
Conread position:
               
315-674
               

               
Cow position:
               
chrX:31442611-31442944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
315-674
               

               
Cow position:
               
chrX:34565513-34565161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 110
               

               
Conread position:
               
315-674
               

               
Cow position:
               
chrX:38094298-38094645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 34
               

               
Conread position:
               
315-674
               

               
Cow position:
               
chrX:42492293-42492637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
315-678
               

               
Cow position:
               
chrX:18111607-18111264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
66, 142
               

               
Conread position:
               
316-674
               

               
Cow position:
               
chrX:12309158-12309507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
71, 142
               

               
Conread position:
               
317-492
               

               
Cow position:
               
chrX:37867659-37867482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
70, 141
               

               
Conread position:
               
317-529
               

               
Cow position:
               
chrX:3494595-3494808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
70, 141
               

               
Conread position:
               
318-513
               

               
Cow position:
               
chrX:2551302-2551121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
152, 67
               

               
Conread position:
               
318-515
               

               
Cow position:
               
chrX:9272232-9272440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
318-520
               

               
Cow position:
               
chrX:19761974-19761777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
318-530
               

               
Cow position:
               
chrX:41858659-41858871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
73, 137
               

               
Conread position:
               
318-537
               

               
Cow position:
               
chrX:32910322-32910110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
318-545
               

               
Cow position:
               
chrX:29478947-29478724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
71, 138
               

               
Conread position:
               
318-578
               

               
Cow position:
               
chrX:35269081-35268834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
318-592
               

               
Cow position:
               
chrX:4645689-4645957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 90
               

               
Conread position:
               
318-602
               

               
Cow position:
               
chrX:44339096-44339379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
74, 26
               

               
Conread position:
               
318-639
               

               
Cow position:
               
chrX:29050467-29050155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
102, 33
               

               
Conread position:
               
318-643
               

               
Cow position:
               
chrX:10516479-10516160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 140
               

               
Conread position:
               
318-674
               

               
Cow position:
               
chrX:8925905-8925579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
318-674
               

               
Cow position:
               
chrX:47186101-47186443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
116, 75
               

               
Conread position:
               
319-445
               

               
Cow position:
               
chrX:10479974-10479842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
319-479
               

               
Cow position:
               
chrX:3494826-3494981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
68, 133
               

               
Conread position:
               
319-486
               

               
Cow position:
               
chrX:23497473-23497634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
319-500
               

               
Cow position:
               
chrX:5097570-5097756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
319-501
               

               
Cow position:
               
chrX:42760477-42760294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
66, 137
               

               
Conread position:
               
319-511
               

               
Cow position:
               
chrX:1087924-1088108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 91
               

               
Conread position:
               
319-511
               

               
Cow position:
               
chrX:8327129-8326936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 139
               

               
Conread position:
               
319-528
               

               
Cow position:
               
chrX:908165-907961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
109, 133
               

               
Conread position:
               
319-535
               

               
Cow position:
               
chrX:16323791-16324006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
67, 141
               

               
Conread position:
               
319-543
               

               
Cow position:
               
chrX:31744791-31745005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
192, 54
               

               
Conread position:
               
319-543
               

               
Cow position:
               
chrX:38302038-38301809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
68, 141
               

               
Conread position:
               
319-557
               

               
Cow position:
               
chrX:11653991-11653750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 135
               

               
Conread position:
               
319-588
               

               
Cow position:
               
chrX:27074827-27075090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 138
               

               
Conread position:
               
319-596
               

               
Cow position:
               
chrX:22392764-22393035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 91
               

               
Conread position:
               
319-656
               

               
Cow position:
               
chrX:34314245-34313925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 135
               

               
Conread position:
               
319-665
               

               
Cow position:
               
chrX:35413818-35413507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
273, 33
               

               
Conread position:
               
319-665
               

               
Cow position:
               
chrX:46072606-46072933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 74
               

               
Conread position:
               
319-666
               

               
Cow position:
               
chrX:42927606-42927933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
319-671
               

               
Cow position:
               
chrX:38218937-38218592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
78, 137
               

               
Conread position:
               
319-674
               

               
Cow position:
               
chrX:1499878-1499543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 74
               

               
Conread position:
               
319-674
               

               
Cow position:
               
chrX:12250039-12249681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 56
               

               
Conread position:
               
319-674
               

               
Cow position:
               
chrX:15006935-15007272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 60
               

               
Conread position:
               
319-674
               

               
Cow position:
               
chrX:21986077-21986414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
319-674
               

               
Cow position:
               
chrX:29542004-29542341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
319-674
               

               
Cow position:
               
chrX:41878713-41879054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
319-674
               

               
Cow position:
               
chrX:44397235-44396897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
70, 140
               

               
Conread position:
               
320-520
               

               
Cow position:
               
chrX:35681790-35681589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
67, 135
               

               
Conread position:
               
320-536
               

               
Cow position:
               
chrX:35278533-35278336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
320-674
               

               
Cow position:
               
chrX:41674320-41673986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
321-491
               

               
Cow position:
               
chrX:41166607-41166773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 132
               

               
Conread position:
               
321-514
               

               
Cow position:
               
chrX:27415366-27415551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
322-510
               

               
Cow position:
               
chrX:46533083-46533272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 139
               

               
Conread position:
               
322-672
               

               
Cow position:
               
chrX:45875611-45875271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
323-670
               

               
Cow position:
               
chrX:20152068-20151728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
324-671
               

               
Cow position:
               
chrX:40685110-40685450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
62, 132
               

               
Conread position:
               
327-492
               

               
Cow position:
               
chrX:10237697-10237862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
327-505
               

               
Cow position:
               
chrX:31986356-31986536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 130
               

               
Conread position:
               
327-511
               

               
Cow position:
               
chrX:48822126-48822310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
70, 130
               

               
Conread position:
               
327-514
               

               
Cow position:
               
chrX:11781463-11781282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
82, 92
               

               
Conread position:
               
327-526
               

               
Cow position:
               
chrX:41809959-41810151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
327-545
               

               
Cow position:
               
chrX:3806894-3806679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 126
               

               
Conread position:
               
327-562
               

               
Cow position:
               
chrX:42432298-42432528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
162, 125
               

               
Conread position:
               
327-611
               

               
Cow position:
               
chrX:30840757-30840480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
166, 125
               

               
Conread position:
               
327-638
               

               
Cow position:
               
chrX:43779649-43779937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
327-645
               

               
Cow position:
               
chrX:38560766-38560459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
226, 58
               

               
Conread position:
               
327-665
               

               
Cow position:
               
chrX:14973541-14973854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
327-670
               

               
Cow position:
               
chrX:1615842-1616162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
230, 49
               

               
Conread position:
               
327-674
               

               
Cow position:
               
chrX:10831265-10831615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 125
               

               
Conread position:
               
327-674
               

               
Cow position:
               
chrX:27228345-27228001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 136
               

               
Conread position:
               
327-674
               

               
Cow position:
               
chrX:32821256-32820906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 141
               

               
Conread position:
               
330-509
               

               
Cow position:
               
chrX:5876316-5876141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 42
               

               
Conread position:
               
330-512
               

               
Cow position:
               
chrX:47378917-47379090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
330-514
               

               
Cow position:
               
chrX:34270774-34270592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
45, 127
               

               
Conread position:
               
330-515
               

               
Cow position:
               
chrX:48118523-48118704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 124
               

               
Conread position:
               
330-564
               

               
Cow position:
               
chrX:42282790-42282559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
58, 128
               

               
Conread position:
               
330-670
               

               
Cow position:
               
chrX:4768941-4768626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
62, 124
               

               
Conread position:
               
330-672
               

               
Cow position:
               
chrX:34543999-34543666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 129
               

               
Conread position:
               
330-673
               

               
Cow position:
               
chrX:37780899-37781232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
330-673
               

               
Cow position:
               
chrX:43115362-43115030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
58, 129
               

               
Conread position:
               
330-674
               

               
Cow position:
               
chrX:4278906-4279233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
330-674
               

               
Cow position:
               
chrX:29544673-29545000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
279, 22
               

               
Conread position:
               
330-674
               

               
Cow position:
               
chrX:46770748-46771090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
10, 94
               

               
Conread position:
               
331-545
               

               
Cow position:
               
chrX:46069973-46070177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
114, 58
               

               
Conread position:
               
331-566
               

               
Cow position:
               
chrX:32574528-32574293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
41, 125
               

               
Conread position:
               
331-612
               

               
Cow position:
               
chrX:44702853-44703137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 211
               

               
Conread position:
               
331-619
               

               
Cow position:
               
chrX:19965183-19965474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 127
               

               
Conread position:
               
331-670
               

               
Cow position:
               
chrX:8731306-8730968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 127
               

               
Conread position:
               
331-674
               

               
Cow position:
               
chrX:34238935-34238598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 130
               

               
Conread position:
               
336-519
               

               
Cow position:
               
chrX:19795302-19795482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
336-534
               

               
Cow position:
               
chrX:30824192-30823996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 115
               

               
Conread position:
               
336-551
               

               
Cow position:
               
chrX:29318077-29317860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 123
               

               
Conread position:
               
336-584
               

               
Cow position:
               
chrX:48120998-48121236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 59
               

               
Conread position:
               
336-603
               

               
Cow position:
               
chrX:1360289-1360030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
161, 63
               

               
Conread position:
               
336-607
               

               
Cow position:
               
chrX:27511628-27511367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
240, 49
               

               
Conread position:
               
336-638
               

               
Cow position:
               
chrX:41068927-41068630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 119
               

               
Conread position:
               
336-668
               

               
Cow position:
               
chrX:40035232-40035558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
51, 122
               

               
Conread position:
               
336-674
               

               
Cow position:
               
chrX:13868911-13868571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 123
               

               
Conread position:
               
336-674
               

               
Cow position:
               
chrX:22822262-22821929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
46, 130
               

               
Conread position:
               
336-674
               

               
Cow position:
               
chrX:31294362-31294679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 124
               

               
Conread position:
               
336-674
               

               
Cow position:
               
chrX:35543091-35542773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
61, 116
               

               
Conread position:
               
337-674
               

               
Cow position:
               
chrX:23513801-23514137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
49, 163
               

               
Conread position:
               
338-524
               

               
Cow position:
               
chrX:7493905-7494081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
338-545
               

               
Cow position:
               
chrX:35620910-35620702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
338-577
               

               
Cow position:
               
chrX:1397830-1397596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 96
               

               
Conread position:
               
338-645
               

               
Cow position:
               
chrX:38208349-38208640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
338-667
               

               
Cow position:
               
chrX:47873131-47873454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
43, 85
               

               
Conread position:
               
338-674
               

               
Cow position:
               
chrX:8900224-8899906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 94
               

               
Conread position:
               
338-674
               

               
Cow position:
               
chrX:15597233-15596919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
338-674
               

               
Cow position:
               
chrX:30922377-30922061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
51, 120
               

               
Conread position:
               
338-674
               

               
Cow position:
               
chrX:36393136-36393469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 120
               

               
Conread position:
               
338-674
               

               
Cow position:
               
chrX:47165679-47166008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
44, 121
               

               
Conread position:
               
338-674
               

               
Cow position:
               
chrX:47344504-47344176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 122
               

               
Conread position:
               
338-674
               

               
Cow position:
               
chrX:47484057-47484390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
43, 121
               

               
Conread position:
               
339-616
               

               
Cow position:
               
chrX:14955564-14955833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
339-674
               

               
Cow position:
               
chrX:47046308-47046637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
13, 119
               

               
Conread position:
               
340-671
               

               
Cow position:
               
chrX:13647581-13647904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
342-495
               

               
Cow position:
               
chrX:36568856-36569008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 123
               

               
Conread position:
               
342-545
               

               
Cow position:
               
chrX:11859335-11859537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 116
               

               
Conread position:
               
343-621
               

               
Cow position:
               
chrX:40283323-40283052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
344-514
               

               
Cow position:
               
chrX:28850917-28850758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
344-584
               

               
Cow position:
               
chrX:20677948-20678190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
192, 108
               

               
Conread position:
               
344-603
               

               
Cow position:
               
chrX:14275549-14275802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
201, 108
               

               
Conread position:
               
344-664
               

               
Cow position:
               
chrX:34222912-34222598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 106
               

               
Conread position:
               
344-674
               

               
Cow position:
               
chrX:21672761-21672433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
35, 118
               

               
Conread position:
               
345-473
               

               
Cow position:
               
chrX:39094132-39094252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
345-520
               

               
Cow position:
               
chrX:32877178-32877352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
345-637
               

               
Cow position:
               
chrX:33855025-33855323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 104
               

               
Conread position:
               
345-638
               

               
Cow position:
               
chrX:169343-169630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
42, 100
               

               
Conread position:
               
345-670
               

               
Cow position:
               
chrX:9634991-9635299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
46, 113
               

               
Conread position:
               
347-583
               

               
Cow position:
               
chrX:23188593-23188813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
349-535
               

               
Cow position:
               
chrX:39180039-39180225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 94
               

               
Conread position:
               
350-542
               

               
Cow position:
               
chrX:17704581-17704391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 106
               

               
Conread position:
               
350-574
               

               
Cow position:
               
chrX:32318494-32318276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
141, 100
               

               
Conread position:
               
351-491
               

               
Cow position:
               
chrX:40543336-40543469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
351-585
               

               
Cow position:
               
chrX:48652246-48652470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
351-598
               

               
Cow position:
               
chrX:18964633-18964875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
40, 110
               

               
Conread position:
               
352-674
               

               
Cow position:
               
chrX:11614875-11614577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
352-674
               

               
Cow position:
               
chrX:31252599-31252296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
353-622
               

               
Cow position:
               
chrX:4515878-4515609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
41, 102
               

               
Conread position:
               
354-535
               

               
Cow position:
               
chrX:25459541-25459726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 128
               

               
Conread position:
               
359-673
               

               
Cow position:
               
chrX:16416687-16416389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 39
               

               
Conread position:
               
363-668
               

               
Cow position:
               
chrX:32170712-32171004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
25, 91
               

               
Conread position:
               
363-674
               

               
Cow position:
               
chrX:24287753-24288046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 88
               

               
Conread position:
               
364-674
               

               
Cow position:
               
chrX:28134511-28134228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 17
               

               
Conread position:
               
365-598
               

               
Cow position:
               
chrX:6541547-6541787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
25, 184
               

               
Conread position:
               
377-663
               

               
Cow position:
               
chrX:43568081-43567811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 76
               

               
Conread position:
               
377-674
               

               
Cow position:
               
chrX:11717622-11717906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
175, 80
               

               
Conread position:
               
380-670
               

               
Cow position:
               
chrX:37836736-37836470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
147, 71
               

               
Conread position:
               
381-529
               

               
Cow position:
               
chrX:36313849-36313992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
381-605
               

               
Cow position:
               
chrX:32977929-32978135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
381-621
               

               
Cow position:
               
chrX:41270829-41271072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
381-622
               

               
Cow position:
               
chrX:11317811-11318042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
381-633
               

               
Cow position:
               
chrX:16575269-16575037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
381-654
               

               
Cow position:
               
chrX:16348414-16348672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
381-654
               

               
Cow position:
               
chrX:37129426-37129162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 71
               

               
Conread position:
               
381-668
               

               
Cow position:
               
chrX:878223-878493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
39, 35
               

               
Conread position:
               
381-670
               

               
Cow position:
               
chrX:17726133-17725856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 75
               

               
Conread position:
               
381-670
               

               
Cow position:
               
chrX:27393869-27394137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
381-670
               

               
Cow position:
               
chrX:40269651-40269370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
28, 73
               

               
Conread position:
               
381-671
               

               
Cow position:
               
chrX:27516675-27516409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
381-671
               

               
Cow position:
               
chrX:43730067-43730337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
280, 71
               

               
Conread position:
               
381-673
               

               
Cow position:
               
chrX:9365519-9365796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:616101-616384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
16, 71
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:6278341-6278624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:7710381-7710665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:11084906-11085179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:13382482-13382207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
51, 75
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:14599689-14599411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
174, 36
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:29680105-29680382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:34402163-34401876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
78, 66
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:34503079-34502800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 73
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:40480708-40480991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:40557523-40557803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
381-674
               

               
Cow position:
               
chrX:46433647-46433364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 23
               

               
Conread position:
               
382-511
               

               
Cow position:
               
chrX:27667581-27667457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
382-545
               

               
Cow position:
               
chrX:31829305-31829463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
382-622
               

               
Cow position:
               
chrX:4746090-4746316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
382-664
               

               
Cow position:
               
chrX:28878018-28878281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 70
               

               
Conread position:
               
382-665
               

               
Cow position:
               
chrX:45113776-45113504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
125, 20
               

               
Conread position:
               
382-674
               

               
Cow position:
               
chrX:38006614-38006886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
382-674
               

               
Cow position:
               
chrX:38728890-38728615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
382-674
               

               
Cow position:
               
chrX:40809849-40809564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
171, 70
               

               
Conread position:
               
383-617
               

               
Cow position:
               
chrX:19097065-19097292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
113, 19
               

               
Conread position:
               
383-662
               

               
Cow position:
               
chrX:29549399-29549662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
384-574
               

               
Cow position:
               
chrX:20743757-20743575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
384-613
               

               
Cow position:
               
chrX:15820750-15820531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
384-616
               

               
Cow position:
               
chrX:32623724-32623498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
384-616
               

               
Cow position:
               
chrX:36514739-36514963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
93, 18
               

               
Conread position:
               
384-647
               

               
Cow position:
               
chrX:23562786-23562534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
250, 68
               

               
Conread position:
               
384-651
               

               
Cow position:
               
chrX:45883817-45884079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
197, 56
               

               
Conread position:
               
384-663
               

               
Cow position:
               
chrX:29194384-29194123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
46, 67
               

               
Conread position:
               
384-674
               

               
Cow position:
               
chrX:5872471-5872195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
384-674
               

               
Cow position:
               
chrX:33640129-33639849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
154, 66
               

               
Conread position:
               
384-674
               

               
Cow position:
               
chrX:41884258-41884536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
173, 67
               

               
Conread position:
               
385-536
               

               
Cow position:
               
chrX:29733440-29733585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
386-603
               

               
Cow position:
               
chrX:23092025-23091812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
386-616
               

               
Cow position:
               
chrX:22914892-22915105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
386-674
               

               
Cow position:
               
chrX:8797401-8797129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
278, 69
               

               
Conread position:
               
386-674
               

               
Cow position:
               
chrX:27771816-27772083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
142, 68
               

               
Conread position:
               
386-674
               

               
Cow position:
               
chrX:31312181-31311907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
387-640
               

               
Cow position:
               
chrX:30543134-30543381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
388-530
               

               
Cow position:
               
chrX:47342265-47342129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
388-623
               

               
Cow position:
               
chrX:5900612-5900393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
141, 67
               

               
Conread position:
               
390-636
               

               
Cow position:
               
chrX:17542108-17541868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
391-621
               

               
Cow position:
               
chrX:3130718-3130502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
136, 13
               

               
Conread position:
               
392-674
               

               
Cow position:
               
chrX:29289724-29289458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
135, 60
               

               
Conread position:
               
394-600
               

               
Cow position:
               
chrX:19943092-19943290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
394-664
               

               
Cow position:
               
chrX:42235381-42235640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
394-670
               

               
Cow position:
               
chrX:4043723-4043970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
394-674
               

               
Cow position:
               
chrX:7695892-7695626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
197, 19
               

               
Conread position:
               
394-674
               

               
Cow position:
               
chrX:9416540-9416815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
157, 58
               

               
Conread position:
               
395-674
               

               
Cow position:
               
chrX:11073049-11073310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
398-674
               

               
Cow position:
               
chrX:17662458-17662715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
401-674
               

               
Cow position:
               
chrX:917231-917486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
190, 51
               

               
Conread position:
               
402-673
               

               
Cow position:
               
chrX:29121183-29120925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
402-674
               

               
Cow position:
               
chrX:10411848-10412107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
403-671
               

               
Cow position:
               
chrX:42171162-42171415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
406-675
               

               
Cow position:
               
chrX:7162188-7161937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
149, 39
               

               
Conread position:
               
407-674
               

               
Cow position:
               
chrX:1514288-1514529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
416-672
               

               
Cow position:
               
chrX:11856552-11856308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
420-670
               

               
Cow position:
               
chrX:37910563-37910328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
421-674
               

               
Cow position:
               
chrX:45403708-45403952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
421-674
               

               
Cow position:
               
chrX:47300786-47301024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
119, 31
               

               
Conread position:
               
421-677
               

               
Cow position:
               
chrX:26625554-26625793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
117, 34
               

               
Conread position:
               
423-670
               

               
Cow position:
               
chrX:38936815-38936582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
425-674
               

               
Cow position:
               
chrX:7572018-7571782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
132, 27
               

               
Conread position:
               
444-668
               

               
Cow position:
               
chrX:27685348-27685131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 79
               

               
Conread position:
               
451-674
               

               
Cow position:
               
chrX:7497335-7497121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 100
               

               
Conread position:
               
455-674
               

               
Cow position:
               
chrX:42507560-42507768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
457-664
               

               
Cow position:
               
chrX:39558262-39558462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
457-664
               

               
Cow position:
               
chrX:44873475-44873673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
457-669
               

               
Cow position:
               
chrX:21566493-21566285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
100, 81
               

               
Conread position:
               
457-669
               

               
Cow position:
               
chrX:25338274-25338066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 68
               

               
Conread position:
               
457-670
               

               
Cow position:
               
chrX:26440699-26440897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
457-674
               

               
Cow position:
               
chrX:2467970-2467761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
83, 73
               

               
Conread position:
               
457-674
               

               
Cow position:
               
chrX:12405295-12405509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
457-674
               

               
Cow position:
               
chrX:27680484-27680277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
93, 81
               

               
Conread position:
               
458-610
               

               
Cow position:
               
chrX:43973630-43973481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
459-584
               

               
Cow position:
               
chrX:42498964-42499086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
460-670
               

               
Cow position:
               
chrX:13785280-13785481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
83, 12
               

               
Conread position:
               
461-670
               

               
Cow position:
               
chrX:618920-619122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
85, 70
               

               
Conread position:
               
462-614
               

               
Cow position:
               
chrX:22466037-22465875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
462-669
               

               
Cow position:
               
chrX:17630722-17630920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
462-674
               

               
Cow position:
               
chrX:19003374-19003178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
464-622
               

               
Cow position:
               
chrX:13136153-13136307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
464-674
               

               
Cow position:
               
chrX:11589509-11589710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
470-673
               

               
Cow position:
               
chrX:6234376-6234574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
473-674
               

               
Cow position:
               
chrX:11454972-11455180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
473-674
               

               
Cow position:
               
chrX:20790983-20790799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
474-670
               

               
Cow position:
               
chrX:26875812-26876001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
144, 57
               

               
Conread position:
               
475-670
               

               
Cow position:
               
chrX:1810092-1810282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 57
               

               
Conread position:
               
479-617
               

               
Cow position:
               
chrX:17301242-17301379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 70
               

               
Conread position:
               
480-674
               

               
Cow position:
               
chrX:25232656-25232468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
132, 71
               

               
Conread position:
               
482-674
               

               
Cow position:
               
chrX:41166901-41167087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
483-669
               

               
Cow position:
               
chrX:12018352-12018171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
176, 55
               

               
Conread position:
               
483-674
               

               
Cow position:
               
chrX:36961701-36961517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
488-670
               

               
Cow position:
               
chrX:28845888-28845714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 50
               

               
Conread position:
               
491-664
               

               
Cow position:
               
chrX:42461692-42461856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
491-674
               

               
Cow position:
               
chrX:42875035-42874859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
494-673
               

               
Cow position:
               
chrX:35681391-35681217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
497-675
               

               
Cow position:
               
chrX:42994659-42994493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
498-664
               

               
Cow position:
               
chrX:28157543-28157383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
498-670
               

               
Cow position:
               
chrX:17498130-17497967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
499-670
               

               
Cow position:
               
chrX:41199149-41198984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
500-671
               

               
Cow position:
               
chrX:29509395-29509563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
500-674
               

               
Cow position:
               
chrX:40648029-40647865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
503-673
               

               
Cow position:
               
chrX:12116087-12115918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
137, 36
               

               
Conread position:
               
503-674
               

               
Cow position:
               
chrX:47379427-47379600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
102, 35
               

               
Conread position:
               
505-674
               

               
Cow position:
               
chrX:26286019-26285857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
506-665
               

               
Cow position:
               
chrX:23497627-23497781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
506-674
               

               
Cow position:
               
chrX:38439518-38439356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
56, 32
               

               
Conread position:
               
507-668
               

               
Cow position:
               
chrX:35969050-35969203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
507-674
               

               
Cow position:
               
chrX:41743950-41743789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
544-674
               

               
Cow position:
               
chrX:35284623-35284497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
554-674
               

               
Cow position:
               
chrX:37048584-37048698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
80, 0
               
Show alignments to all cow chromosomes.