Non-Coding RNA Search

Cow genome map


           Conread name:
           Lng1-LNG010084D12
        

               Conread position:
               1-117
               

               Cow position:
               chr5:58793602-58793486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-131
               

               Cow position:
               chr5:45574360-45574230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-138
               

               Cow position:
               chr5:72564769-72564907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-140
               

               Cow position:
               chr5:37808658-37808518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-140
               

               Cow position:
               chr5:63987440-63987300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               109
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               124, 63
               

               Conread position:
               1-145
               

               Cow position:
               chr5:49685266-49685127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               1-146
               

               Cow position:
               chr5:43992329-43992475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-148
               

               Cow position:
               chr5:4710146-4709999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               124, 60
               

               Conread position:
               1-148
               

               Cow position:
               chr5:9233984-9233833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               1-148
               

               Cow position:
               chr5:67212366-67212513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-149
               

               Cow position:
               chr5:30949910-30949761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-149
               

               Cow position:
               chr5:54060283-54060430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               121, 36
               

               Conread position:
               1-149
               

               Cow position:
               chr5:55129348-55129497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               108
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-149
               

               Cow position:
               chr5:57230333-57230183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-150
               

               Cow position:
               chr5:64758762-64758614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               109
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               1-159
               

               Cow position:
               chr5:44054047-44053891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               124, 18
               

               Conread position:
               1-160
               

               Cow position:
               chr5:37646538-37646377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               124, 89
               

               Conread position:
               1-184
               

               Cow position:
               chr5:49501819-49501623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               1-185
               

               Cow position:
               chr5:55795962-55795774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               1-190
               

               Cow position:
               chr5:56334503-56334320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               124, 58
               

               Conread position:
               1-197
               

               Cow position:
               chr5:54350356-54350163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               124, 142
               

               Conread position:
               1-198
               

               Cow position:
               chr5:29353120-29352920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               124, 110
               

               Conread position:
               1-204
               

               Cow position:
               chr5:47696436-47696242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               185, 46
               

               Conread position:
               1-205
               

               Cow position:
               chr5:30845118-30845325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               137, 58
               

               Conread position:
               1-206
               

               Cow position:
               chr5:69731511-69731703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               124, 23
               

               Conread position:
               1-207
               

               Cow position:
               chr5:72045669-72045456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               124, 55
               

               Conread position:
               1-208
               

               Cow position:
               chr5:29828051-29828270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               34, 101
               

               Conread position:
               1-208
               

               Cow position:
               chr5:69383260-69383473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               138, 128
               

               Conread position:
               1-211
               

               Cow position:
               chr5:16893766-16893553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               164
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               182, 0
               

               Conread position:
               1-211
               

               Cow position:
               chr5:47316969-47316750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               129, 167
               

               Conread position:
               1-212
               

               Cow position:
               chr5:2309551-2309332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               129, 117
               

               Conread position:
               1-212
               

               Cow position:
               chr5:8024188-8023989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               1-212
               

               Cow position:
               chr5:15470939-15471144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               124, 21
               

               Conread position:
               1-212
               

               Cow position:
               chr5:30561937-30562154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-213
               

               Cow position:
               chr5:2469202-2468986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               124, 88
               

               Conread position:
               1-213
               

               Cow position:
               chr5:6520016-6520233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               66, 101
               

               Conread position:
               1-213
               

               Cow position:
               chr5:7057396-7057170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               124, 77
               

               Conread position:
               1-213
               

               Cow position:
               chr5:12557284-12557060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               1-213
               

               Cow position:
               chr5:14550579-14550355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               1-213
               

               Cow position:
               chr5:18289136-18289345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               124, 30
               

               Conread position:
               1-213
               

               Cow position:
               chr5:19752312-19752528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               124, 61
               

               Conread position:
               1-213
               

               Cow position:
               chr5:33560729-33560511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               125, 116
               

               Conread position:
               1-213
               

               Cow position:
               chr5:34624964-34625175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               65, 125
               

               Conread position:
               1-213
               

               Cow position:
               chr5:41165093-41165309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               164
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-213
               

               Cow position:
               chr5:41935646-41935428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               82, 56
               

               Conread position:
               1-213
               

               Cow position:
               chr5:52165172-52164946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               124, 76
               

               Conread position:
               1-213
               

               Cow position:
               chr5:57686732-57686521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               124, 189
               

               Conread position:
               1-213
               

               Cow position:
               chr5:59627105-59627319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-213
               

               Cow position:
               chr5:61455853-61456074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               140, 60
               

               Conread position:
               1-213
               

               Cow position:
               chr5:63627521-63627313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               124, 56
               

               Conread position:
               1-214
               

               Cow position:
               chr5:16938017-16937806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               125, 85
               

               Conread position:
               1-214
               

               Cow position:
               chr5:17566433-17566215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               122, 36
               

               Conread position:
               1-214
               

               Cow position:
               chr5:30247517-30247297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               89, 133
               

               Conread position:
               1-214
               

               Cow position:
               chr5:43604146-43604367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               134, 46
               

               Conread position:
               1-214
               

               Cow position:
               chr5:50575789-50575996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               185, 93
               

               Conread position:
               1-214
               

               Cow position:
               chr5:57767978-57767760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               126, 25
               

               Conread position:
               1-215
               

               Cow position:
               chr5:55955913-55956141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               60, 45
               

               Conread position:
               1-215
               

               Cow position:
               chr5:64139565-64139792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               126, 176
               

               Conread position:
               1-218
               

               Cow position:
               chr5:42845588-42845365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               93, 109
               

               Conread position:
               1-218
               

               Cow position:
               chr5:43858414-43858186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               124, 67
               

               Conread position:
               1-218
               

               Cow position:
               chr5:50101371-50101145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               1-218
               

               Cow position:
               chr5:50723051-50723280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               1-218
               

               Cow position:
               chr5:59626966-59626740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               124, 110
               

               Conread position:
               1-220
               

               Cow position:
               chr5:3771855-3772075 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               124, 25
               

               Conread position:
               1-221
               

               Cow position:
               chr5:28224458-28224677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               73, 56
               

               Conread position:
               1-221
               

               Cow position:
               chr5:56860452-56860677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               139, 70
               

               Conread position:
               1-222
               

               Cow position:
               chr5:11668180-11667949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               124, 227
               

               Conread position:
               1-222
               

               Cow position:
               chr5:33273700-33273935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               66, 43
               

               Conread position:
               1-222
               

               Cow position:
               chr5:41713304-41713518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               88, 34
               

               Conread position:
               1-222
               

               Cow position:
               chr5:55176900-55177116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               124, 24
               

               Conread position:
               1-223
               

               Cow position:
               chr5:35459289-35459058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               1-225
               

               Cow position:
               chr5:5257283-5257049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               124, 225
               

               Conread position:
               1-225
               

               Cow position:
               chr5:35247105-35246867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               55, 11
               

               Conread position:
               1-226
               

               Cow position:
               chr5:52852976-52853207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               1-228
               

               Cow position:
               chr5:61049337-61049576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               129, 108
               

               Conread position:
               1-230
               

               Cow position:
               chr5:35969538-35969786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               124, 36
               

               Conread position:
               1-232
               

               Cow position:
               chr5:36838965-36839194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               185, 138
               

               Conread position:
               1-233
               

               Cow position:
               chr5:44796728-44796488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               124, 165
               

               Conread position:
               1-236
               

               Cow position:
               chr5:16025455-16025233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               182, 33
               

               Conread position:
               1-236
               

               Cow position:
               chr5:44848019-44847777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               32, 229
               

               Conread position:
               1-238
               

               Cow position:
               chr5:4280451-4280695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               30, 227
               

               Conread position:
               1-240
               

               Cow position:
               chr5:57074326-57074082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               124, 191
               

               Conread position:
               1-241
               

               Cow position:
               chr5:11562718-11562474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               52, 221
               

               Conread position:
               1-242
               

               Cow position:
               chr5:51053647-51053393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               52, 9
               

               Conread position:
               1-242
               

               Cow position:
               chr5:60515023-60514770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               124, 84
               

               Conread position:
               1-244
               

               Cow position:
               chr5:70678638-70678389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               132, 46
               

               Conread position:
               2-149
               

               Cow position:
               chr5:9369265-9369117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               2-204
               

               Cow position:
               chr5:20779389-20779181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               123, 33
               

               Conread position:
               2-218
               

               Cow position:
               chr5:26262668-26262453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               123, 59
               

               Conread position:
               2-218
               

               Cow position:
               chr5:57101516-57101294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               138, 45
               

               Conread position:
               2-225
               

               Cow position:
               chr5:66972435-66972668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               123, 229
               

               Conread position:
               2-237
               

               Cow position:
               chr5:2827380-2827626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               123, 62
               

               Conread position:
               2-243
               

               Cow position:
               chr5:55068712-55068958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               123, 185
               

               Conread position:
               3-147
               

               Cow position:
               chr5:61875550-61875689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               121, 16
               

               Conread position:
               3-208
               

               Cow position:
               chr5:4267677-4267882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               181, 118
               

               Conread position:
               3-208
               

               Cow position:
               chr5:16214694-16214903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               3-208
               

               Cow position:
               chr5:30805172-30805371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               122, 58
               

               Conread position:
               3-212
               

               Cow position:
               chr5:49474538-49474328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               182, 132
               

               Conread position:
               3-213
               

               Cow position:
               chr5:60948140-60948359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               122, 63
               

               Conread position:
               3-213
               

               Cow position:
               chr5:73168004-73167786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               3-214
               

               Cow position:
               chr5:5855865-5856088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               3-214
               

               Cow position:
               chr5:17828472-17828249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               3-218
               

               Cow position:
               chr5:45225806-45225592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               122, 67
               

               Conread position:
               3-221
               

               Cow position:
               chr5:40102719-40102514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               122, 56
               

               Conread position:
               3-226
               

               Cow position:
               chr5:35208271-35208503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               122, 56
               

               Conread position:
               3-239
               

               Cow position:
               chr5:56153624-56153851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               183, 49
               

               Conread position:
               4-148
               

               Cow position:
               chr5:64592087-64591942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               4-199
               

               Cow position:
               chr5:26253165-26252983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               4-212
               

               Cow position:
               chr5:56028531-56028319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               115, 46
               

               Conread position:
               4-218
               

               Cow position:
               chr5:15363890-15364102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               121, 131
               

               Conread position:
               4-221
               

               Cow position:
               chr5:72006855-72006646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               187, 63
               

               Conread position:
               4-238
               

               Cow position:
               chr5:65679962-65679730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               121, 56
               

               Conread position:
               4-243
               

               Cow position:
               chr5:5016437-5016681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               123, 48
               

               Conread position:
               5-149
               

               Cow position:
               chr5:9170572-9170430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               5-175
               

               Cow position:
               chr5:17605125-17604950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               5-205
               

               Cow position:
               chr5:66366519-66366727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               109, 61
               

               Conread position:
               5-210
               

               Cow position:
               chr5:30253750-30253964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               5-210
               

               Cow position:
               chr5:30276699-30276911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               5-210
               

               Cow position:
               chr5:40109502-40109708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               10, 20
               

               Conread position:
               5-211
               

               Cow position:
               chr5:20288254-20288033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               5-212
               

               Cow position:
               chr5:2240980-2240763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               120, 41
               

               Conread position:
               5-212
               

               Cow position:
               chr5:25035245-25035028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               120, 23
               

               Conread position:
               5-213
               

               Cow position:
               chr5:29903514-29903316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               180, 116
               

               Conread position:
               5-213
               

               Cow position:
               chr5:30629150-30628926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               75, 113
               

               Conread position:
               5-213
               

               Cow position:
               chr5:34915044-34914827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               5-213
               

               Cow position:
               chr5:47601821-47602035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               120, 161
               

               Conread position:
               5-218
               

               Cow position:
               chr5:22795226-22795438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               120, 54
               

               Conread position:
               5-218
               

               Cow position:
               chr5:56014740-56014953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               179, 122
               

               Conread position:
               5-234
               

               Cow position:
               chr5:65050202-65049975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               24, 57
               

               Conread position:
               5-236
               

               Cow position:
               chr5:50824601-50824831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               120, 132
               

               Conread position:
               5-236
               

               Cow position:
               chr5:69337829-69338063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               119, 163
               

               Conread position:
               5-239
               

               Cow position:
               chr5:39035789-39036039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               120, 106
               

               Conread position:
               5-241
               

               Cow position:
               chr5:58519407-58519161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               120, 223
               

               Conread position:
               6-148
               

               Cow position:
               chr5:66551887-66551743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               6-211
               

               Cow position:
               chr5:30232918-30233135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               119, 96
               

               Conread position:
               6-211
               

               Cow position:
               chr5:51247121-51246912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               83, 186
               

               Conread position:
               7-185
               

               Cow position:
               chr5:64027008-64026819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               7-210
               

               Cow position:
               chr5:64176115-64175906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               7-212
               

               Cow position:
               chr5:7044694-7044480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               7-218
               

               Cow position:
               chr5:34533336-34533553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               8-175
               

               Cow position:
               chr5:17602195-17602019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               11, 46
               

               Conread position:
               8-208
               

               Cow position:
               chr5:60523747-60523949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               163
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               117, 51
               

               Conread position:
               8-214
               

               Cow position:
               chr5:24996209-24995993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               117, 12
               

               Conread position:
               9-210
               

               Cow position:
               chr5:14920917-14920702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               9-213
               

               Cow position:
               chr5:3582573-3582782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               10-195
               

               Cow position:
               chr5:35826616-35826807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               10-195
               

               Cow position:
               chr5:69461347-69461541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               60, 83
               

               Conread position:
               10-199
               

               Cow position:
               chr5:12351793-12351599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               137, 94
               

               Conread position:
               10-200
               

               Cow position:
               chr5:45397587-45397779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               151
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               115, 50
               

               Conread position:
               10-201
               

               Cow position:
               chr5:12673459-12673265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               114, 34
               

               Conread position:
               10-201
               

               Cow position:
               chr5:55942365-55942162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               10-208
               

               Cow position:
               chr5:75228185-75227991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               174, 115
               

               Conread position:
               10-210
               

               Cow position:
               chr5:14314542-14314740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               115, 132
               

               Conread position:
               10-211
               

               Cow position:
               chr5:35763285-35763469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               10-212
               

               Cow position:
               chr5:17104867-17105071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               115, 49
               

               Conread position:
               10-212
               

               Cow position:
               chr5:43402919-43403135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               114, 106
               

               Conread position:
               10-212
               

               Cow position:
               chr5:57101765-57101571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               84, 49
               

               Conread position:
               10-212
               

               Cow position:
               chr5:74643661-74643458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               115, 14
               

               Conread position:
               10-214
               

               Cow position:
               chr5:30302909-30303109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               174, 28
               

               Conread position:
               10-214
               

               Cow position:
               chr5:61725981-61726185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               148, 36
               

               Conread position:
               10-218
               

               Cow position:
               chr5:21617472-21617687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               10-218
               

               Cow position:
               chr5:42670855-42670641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               33, 72
               

               Conread position:
               10-218
               

               Cow position:
               chr5:56070873-56071089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               109, 203
               

               Conread position:
               10-218
               

               Cow position:
               chr5:57935094-57934888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               171, 115
               

               Conread position:
               10-220
               

               Cow position:
               chr5:66257653-66257868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               114, 49
               

               Conread position:
               10-221
               

               Cow position:
               chr5:62172426-62172634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               201, 118
               

               Conread position:
               10-235
               

               Cow position:
               chr5:26549126-26548896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               179
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               115, 214
               

               Conread position:
               10-238
               

               Cow position:
               chr5:36868751-36868987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               115, 82
               

               Conread position:
               10-238
               

               Cow position:
               chr5:46512754-46512517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               115, 69
               

               Conread position:
               10-238
               

               Cow position:
               chr5:69099734-69099967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               111, 209
               

               Conread position:
               10-242
               

               Cow position:
               chr5:65752874-65753108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               114, 188
               

               Conread position:
               11-212
               

               Cow position:
               chr5:45845676-45845464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               89, 105
               

               Conread position:
               11-214
               

               Cow position:
               chr5:12901931-12902147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               12-218
               

               Cow position:
               chr5:9894106-9893893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               113, 8
               

               Conread position:
               13-196
               

               Cow position:
               chr5:15722057-15721878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               172, 112
               

               Conread position:
               13-196
               

               Cow position:
               chr5:38168912-38169102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               95, 7
               

               Conread position:
               13-211
               

               Cow position:
               chr5:38833141-38833339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               112, 7
               

               Conread position:
               13-221
               

               Cow position:
               chr5:7177168-7177386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               113, 213
               

               Conread position:
               13-226
               

               Cow position:
               chr5:39937133-39937356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               112, 25
               

               Conread position:
               13-228
               

               Cow position:
               chr5:12322787-12322568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               108, 46
               

               Conread position:
               13-229
               

               Cow position:
               chr5:34562034-34562250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               33, 7
               

               Conread position:
               13-237
               

               Cow position:
               chr5:52001606-52001372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               13-265
               

               Cow position:
               chr5:44446848-44446601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               112, 127
               

               Conread position:
               14-243
               

               Cow position:
               chr5:36038983-36038745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               66, 47
               

               Conread position:
               15-198
               

               Cow position:
               chr5:72006471-72006285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               110, 125
               

               Conread position:
               16-145
               

               Cow position:
               chr5:54375482-54375352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               16-148
               

               Cow position:
               chr5:55849905-55850033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               16-149
               

               Cow position:
               chr5:43929715-43929582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               21, 30
               

               Conread position:
               16-155
               

               Cow position:
               chr5:62378803-62378940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               109, 43
               

               Conread position:
               16-196
               

               Cow position:
               chr5:60183823-60184008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               16-211
               

               Cow position:
               chr5:21828888-21829089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               111, 72
               

               Conread position:
               16-213
               

               Cow position:
               chr5:44028283-44028083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               124, 42
               

               Conread position:
               16-213
               

               Cow position:
               chr5:54312621-54312826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               109, 193
               

               Conread position:
               16-213
               

               Cow position:
               chr5:70951860-70951665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               109, 43
               

               Conread position:
               16-214
               

               Cow position:
               chr5:40237231-40237416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               16-229
               

               Cow position:
               chr5:60016188-60016407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               108, 43
               

               Conread position:
               16-236
               

               Cow position:
               chr5:47743648-47743869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               128, 71
               

               Conread position:
               16-238
               

               Cow position:
               chr5:50943137-50942908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               16-242
               

               Cow position:
               chr5:11427213-11426981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               104, 88
               

               Conread position:
               17-156
               

               Cow position:
               chr5:5847824-5847685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               108, 19
               

               Conread position:
               17-198
               

               Cow position:
               chr5:38040543-38040356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               17-202
               

               Cow position:
               chr5:51233998-51233808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               17-211
               

               Cow position:
               chr5:73253432-73253630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               109, 42
               

               Conread position:
               17-213
               

               Cow position:
               chr5:26167442-26167646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               108, 193
               

               Conread position:
               18-212
               

               Cow position:
               chr5:25597855-25598051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               24, 28
               

               Conread position:
               18-214
               

               Cow position:
               chr5:35190132-35190334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               18-226
               

               Cow position:
               chr5:32338944-32338721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               35, 196
               

               Conread position:
               19-208
               

               Cow position:
               chr5:41884945-41885136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               107, 19
               

               Conread position:
               19-211
               

               Cow position:
               chr5:37842256-37842054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               19-212
               

               Cow position:
               chr5:51289568-51289375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               165, 40
               

               Conread position:
               19-222
               

               Cow position:
               chr5:57497404-57497189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               20-213
               

               Cow position:
               chr5:26147615-26147815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               99, 189
               

               Conread position:
               21-201
               

               Cow position:
               chr5:17555007-17554820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               45, 85
               

               Conread position:
               21-236
               

               Cow position:
               chr5:21003339-21003549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               12, 41
               

               Conread position:
               22-209
               

               Cow position:
               chr5:36822913-36823092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               103, 36
               

               Conread position:
               22-222
               

               Cow position:
               chr5:34787598-34787808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               23-207
               

               Cow position:
               chr5:44734698-44734506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               26-200
               

               Cow position:
               chr5:53980724-53980538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               26-201
               

               Cow position:
               chr5:16668727-16668908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               26-213
               

               Cow position:
               chr5:42050582-42050771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               26-217
               

               Cow position:
               chr5:34288220-34288024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               99, 33
               

               Conread position:
               26-218
               

               Cow position:
               chr5:1694058-1693859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               26-221
               

               Cow position:
               chr5:62011713-62011919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               26-242
               

               Cow position:
               chr5:55232781-55232562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               86, 34
               

               Conread position:
               27-185
               

               Cow position:
               chr5:51125978-51125822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               98, 110
               

               Conread position:
               27-211
               

               Cow position:
               chr5:61580313-61580505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               90, 20
               

               Conread position:
               27-212
               

               Cow position:
               chr5:15991608-15991419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               112, 87
               

               Conread position:
               27-212
               

               Cow position:
               chr5:57399221-57399025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               98, 20
               

               Conread position:
               27-214
               

               Cow position:
               chr5:19079283-19079471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               98, 70
               

               Conread position:
               27-236
               

               Cow position:
               chr5:21520407-21520200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               98, 30
               

               Conread position:
               28-212
               

               Cow position:
               chr5:56548604-56548792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               112, 33
               

               Conread position:
               28-243
               

               Cow position:
               chr5:742763-742985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               97, 19
               

               Conread position:
               29-213
               

               Cow position:
               chr5:16179478-16179296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               162, 92
               

               Conread position:
               32-200
               

               Cow position:
               chr5:50087806-50087982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               84, 26
               

               Conread position:
               35-215
               

               Cow position:
               chr5:3817648-3817458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               37-215
               

               Cow position:
               chr5:12562719-12562531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               39, 79
               

               Conread position:
               37-218
               

               Cow position:
               chr5:56433922-56434116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               37-226
               

               Cow position:
               chr5:22102599-22102793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               88, 135
               

               Conread position:
               37-292
               

               Cow position:
               chr5:6876927-6876662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               50, 199
               

               Conread position:
               38-207
               

               Cow position:
               chr5:71724345-71724507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               87, 21
               

               Conread position:
               38-211
               

               Cow position:
               chr5:70591596-70591767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               88, 111
               

               Conread position:
               38-213
               

               Cow position:
               chr5:6438979-6438799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               88, 13
               

               Conread position:
               38-213
               

               Cow position:
               chr5:70270909-70271094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               38-214
               

               Cow position:
               chr5:39815459-39815272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               87, 63
               

               Conread position:
               38-218
               

               Cow position:
               chr5:49821470-49821663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               38-235
               

               Cow position:
               chr5:35394391-35394189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               39-214
               

               Cow position:
               chr5:56327678-56327498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               39-231
               

               Cow position:
               chr5:22242723-22242531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               44, 25
               

               Conread position:
               39-275
               

               Cow position:
               chr5:29979915-29979678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               40-207
               

               Cow position:
               chr5:5017420-5017592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               40-215
               

               Cow position:
               chr5:31648464-31648645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               84, 21
               

               Conread position:
               42-215
               

               Cow position:
               chr5:37253476-37253652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               96, 9
               

               Conread position:
               47-214
               

               Cow position:
               chr5:52029458-52029632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               78, 31
               

               Conread position:
               47-222
               

               Cow position:
               chr5:31234761-31234940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               17, 97
               

               Conread position:
               48-230
               

               Cow position:
               chr5:18578946-18579133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               70, 25
               

               Conread position:
               50-214
               

               Cow position:
               chr5:36143038-36143206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               76, 61
               

               Conread position:
               51-207
               

               Cow position:
               chr5:74065462-74065299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               51-212
               

               Cow position:
               chr5:52192374-52192212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               74, 134
               

               Conread position:
               51-218
               

               Cow position:
               chr5:8736224-8736044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               74, 21
               

               Conread position:
               58-225
               

               Cow position:
               chr5:6245601-6245425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               60-163
               

               Cow position:
               chr5:27611712-27611611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               104
               

               Alignm identity:
               88
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               60-189
               

               Cow position:
               chr5:46704235-46704100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               107
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               60-211
               

               Cow position:
               chr5:57447602-57447439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               60-212
               

               Cow position:
               chr5:46479178-46479021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               60-241
               

               Cow position:
               chr5:58401633-58401821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               60-301
               

               Cow position:
               chr5:29599482-29599236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               65, 159
               

               Conread position:
               61-201
               

               Cow position:
               chr5:4981515-4981660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               61-201
               

               Cow position:
               chr5:42752970-42753111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               110
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               64, 76
               

               Conread position:
               61-207
               

               Cow position:
               chr5:22667136-22667291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               61-210
               

               Cow position:
               chr5:60100535-60100686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               64, 49
               

               Conread position:
               61-212
               

               Cow position:
               chr5:49207262-49207103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               61-212
               

               Cow position:
               chr5:60153840-60153993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               64, 48
               

               Conread position:
               61-212
               

               Cow position:
               chr5:60207773-60207931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               61-213
               

               Cow position:
               chr5:5030508-5030666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               62, 11
               

               Conread position:
               61-213
               

               Cow position:
               chr5:25462153-25462310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               61-213
               

               Cow position:
               chr5:32975823-32975990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               61-213
               

               Cow position:
               chr5:46540991-46540833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               61-213
               

               Cow position:
               chr5:52211622-52211464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               61-218
               

               Cow position:
               chr5:35685000-35685165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               64, 123
               

               Conread position:
               61-221
               

               Cow position:
               chr5:34918411-34918577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               64, 155
               

               Conread position:
               61-225
               

               Cow position:
               chr5:8136536-8136698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               64, 81
               

               Conread position:
               62-213
               

               Cow position:
               chr5:17086955-17086790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               62-220
               

               Cow position:
               chr5:69765968-69765800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               62-228
               

               Cow position:
               chr5:47335094-47335268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               64-213
               

               Cow position:
               chr5:29895239-29895398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               64-213
               

               Cow position:
               chr5:51298645-51298488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               64-222
               

               Cow position:
               chr5:4824216-4824389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               65-214
               

               Cow position:
               chr5:21721401-21721248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               60, 144
               

               Conread position:
               65-218
               

               Cow position:
               chr5:22957479-22957635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               65-238
               

               Cow position:
               chr5:67339952-67340131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               59, 153
               

               Conread position:
               66-207
               

               Cow position:
               chr5:9559491-9559634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               118, 61
               

               Conread position:
               66-213
               

               Cow position:
               chr5:12504720-12504567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               66-240
               

               Cow position:
               chr5:43923091-43922919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               59, 36
               

               Conread position:
               68-212
               

               Cow position:
               chr5:52849157-52849307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               69-209
               

               Cow position:
               chr5:19626651-19626799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               69-218
               

               Cow position:
               chr5:64061092-64061245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               70-212
               

               Cow position:
               chr5:17537599-17537453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               70-229
               

               Cow position:
               chr5:34639196-34639366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               55, 164
               

               Conread position:
               72-221
               

               Cow position:
               chr5:71387283-71387435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               53, 71
               

               Conread position:
               73-257
               

               Cow position:
               chr5:58487452-58487647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               76-213
               

               Cow position:
               chr5:14419930-14419790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               63, 88
               

               Conread position:
               76-226
               

               Cow position:
               chr5:14000725-14000879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               76-240
               

               Cow position:
               chr5:56563834-56564001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               65, 148
               

               Conread position:
               78-238
               

               Cow position:
               chr5:3627095-3626928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               47, 33
               

               Conread position:
               79-213
               

               Cow position:
               chr5:29213244-29213373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               109
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               105, 57
               

               Conread position:
               79-241
               

               Cow position:
               chr5:22898226-22898063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               46, 102
               

               Conread position:
               82-212
               

               Cow position:
               chr5:4728160-4728295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               109
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               82-221
               

               Cow position:
               chr5:44868443-44868590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               48, 144
               

               Conread position:
               83-209
               

               Cow position:
               chr5:31964651-31964771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               83-230
               

               Cow position:
               chr5:48104348-48104504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               89-233
               

               Cow position:
               chr5:18706060-18706202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               36, 48
               

               Conread position:
               97-212
               

               Cow position:
               chr5:44836643-44836761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               97
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               29, 111
               

               Conread position:
               105-228
               

               Cow position:
               chr5:8149197-8149067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               35, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-117
Cow position:	chr5:58793602-58793486 (view UCSC Genome Browser custom track)
Alignm length:	117
Alignm identity:	91
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	0, 0
Conread position:	1-131
Cow position:	chr5:45574360-45574230 (view UCSC Genome Browser custom track)
Alignm length:	131
Alignm identity:	104
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	0, 0
Conread position:	1-138
Cow position:	chr5:72564769-72564907 (view UCSC Genome Browser custom track)
Alignm length:	139
Alignm identity:	104
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	124, 0
Conread position:	1-140
Cow position:	chr5:37808658-37808518 (view UCSC Genome Browser custom track)
Alignm length:	141
Alignm identity:	104
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	124, 0
Conread position:	1-145
Cow position:	chr5:49685266-49685127 (view UCSC Genome Browser custom track)
Alignm length:	145
Alignm identity:	109
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	92, 0
Conread position:	1-146
Cow position:	chr5:43992329-43992475 (view UCSC Genome Browser custom track)
Alignm length:	147
Alignm identity:	112
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	124, 0
Conread position:	1-148
Cow position:	chr5:4710146-4709999 (view UCSC Genome Browser custom track)
Alignm length:	149
Alignm identity:	119
Alignm E-value:	5e-31
Alignm gaps (pig, cow):	124, 60
Conread position:	1-149
Cow position:	chr5:30949910-30949761 (view UCSC Genome Browser custom track)
Alignm length:	150
Alignm identity:	116
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	124, 0
Conread position:	1-150
Cow position:	chr5:64758762-64758614 (view UCSC Genome Browser custom track)
Alignm length:	150
Alignm identity:	109
Alignm E-value:	6e-22
Alignm gaps (pig, cow):	135, 0
Conread position:	1-159
Cow position:	chr5:44054047-44053891 (view UCSC Genome Browser custom track)
Alignm length:	161
Alignm identity:	121
Alignm E-value:	7e-24
Alignm gaps (pig, cow):	124, 18
Conread position:	1-160
Cow position:	chr5:37646538-37646377 (view UCSC Genome Browser custom track)
Alignm length:	163
Alignm identity:	127
Alignm E-value:	2e-30
Alignm gaps (pig, cow):	124, 89
Conread position:	1-184
Cow position:	chr5:49501819-49501623 (view UCSC Genome Browser custom track)
Alignm length:	197
Alignm identity:	145
Alignm E-value:	3e-27
Alignm gaps (pig, cow):	120, 0
Conread position:	1-185
Cow position:	chr5:55795962-55795774 (view UCSC Genome Browser custom track)
Alignm length:	189
Alignm identity:	144
Alignm E-value:	2e-34
Alignm gaps (pig, cow):	65, 0
Conread position:	1-190
Cow position:	chr5:56334503-56334320 (view UCSC Genome Browser custom track)
Alignm length:	191
Alignm identity:	140
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	124, 58
Conread position:	1-197
Cow position:	chr5:54350356-54350163 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	138
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	124, 142
Conread position:	1-198
Cow position:	chr5:29353120-29352920 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	145
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	124, 110
Conread position:	1-204
Cow position:	chr5:47696436-47696242 (view UCSC Genome Browser custom track)
Alignm length:	207
Alignm identity:	152
Alignm E-value:	3e-26
Alignm gaps (pig, cow):	185, 46
Conread position:	1-205
Cow position:	chr5:30845118-30845325 (view UCSC Genome Browser custom track)
Alignm length:	212
Alignm identity:	161
Alignm E-value:	3e-35
Alignm gaps (pig, cow):	137, 58
Conread position:	1-206
Cow position:	chr5:69731511-69731703 (view UCSC Genome Browser custom track)
Alignm length:	207
Alignm identity:	152
Alignm E-value:	1e-26
Alignm gaps (pig, cow):	124, 23
Conread position:	1-207
Cow position:	chr5:72045669-72045456 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	161
Alignm E-value:	6e-32
Alignm gaps (pig, cow):	124, 55