Cow genome map

Conread name: Lng1-LNG010086A07

Conread position: 289-749
Cow position: chr16:5660840-5661310 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 294

Conread position: 292-753
Cow position: chr16:29046003-29046486 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 295-497
Cow position: chr16:7676708-7676507 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 20, 109

Conread position: 295-497
Cow position: chr16:9777117-9777321 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 24, 0

Conread position: 295-616
Cow position: chr16:24881701-24881369 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 95

Conread position: 295-751
Cow position: chr16:15491693-15492171 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 295-751
Cow position: chr16:23982297-23982773 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 252

Conread position: 295-751
Cow position: chr16:40887273-40886798 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 322
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 85, 18

Conread position: 295-753
Cow position: chr16:408046-407567 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 118

Conread position: 295-753
Cow position: chr16:1568464-1567990 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 88

Conread position: 295-753
Cow position: chr16:2411984-2411505 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 348

Conread position: 295-753
Cow position: chr16:2484151-2483678 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 109

Conread position: 295-753
Cow position: chr16:8817119-8816640 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 140

Conread position: 295-753
Cow position: chr16:10204429-10203966 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 97

Conread position: 295-753
Cow position: chr16:10437243-10437707 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 99

Conread position: 295-753
Cow position: chr16:15565736-15566209 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 187

Conread position: 295-753
Cow position: chr16:23253517-23253043 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 48

Conread position: 295-753
Cow position: chr16:25340957-25341429 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 109

Conread position: 295-753
Cow position: chr16:27734819-27734338 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 295-753
Cow position: chr16:28472110-28471637 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 357

Conread position: 295-753
Cow position: chr16:31592920-31592440 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 295-753
Cow position: chr16:40297189-40296714 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 68

Conread position: 295-753
Cow position: chr16:43898283-43897804 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 297-564
Cow position: chr16:44965048-44965320 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 122, 31

Conread position: 297-751
Cow position: chr16:12538936-12538462 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 389

Conread position: 300-658
Cow position: chr16:25152775-25153126 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 124, 32

Conread position: 300-750
Cow position: chr16:25157225-25156763 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 124

Conread position: 300-751
Cow position: chr16:20255315-20254849 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 35

Conread position: 300-753
Cow position: chr16:6549529-6549060 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 53

Conread position: 300-753
Cow position: chr16:9929547-9930004 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 316
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 14, 105

Conread position: 300-753
Cow position: chr16:19713856-19713425 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 103

Conread position: 300-753
Cow position: chr16:26662742-26663213 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 105

Conread position: 301-472
Cow position: chr16:14422707-14422881 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 112, 0

Conread position: 301-583
Cow position: chr16:16687862-16688146 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 107, 202

Conread position: 301-697
Cow position: chr16:32605819-32606233 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 301-709
Cow position: chr16:6942614-6943040 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 301-716
Cow position: chr16:4303478-4303054 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 99

Conread position: 301-753
Cow position: chr16:5918477-5918947 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 323

Conread position: 303-750
Cow position: chr16:49257571-49257122 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 60

Conread position: 305-630
Cow position: chr16:9457524-9457841 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 220
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 116, 27

Conread position: 305-684
Cow position: chr16:18688128-18687734 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 31

Conread position: 305-693
Cow position: chr16:1430224-1430623 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 182

Conread position: 305-750
Cow position: chr16:42740425-42739962 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 20

Conread position: 305-753
Cow position: chr16:28171362-28170899 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 162

Conread position: 306-493
Cow position: chr16:29031913-29032100 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 11, 164

Conread position: 306-527
Cow position: chr16:2728316-2728095 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 8, 128

Conread position: 306-658
Cow position: chr16:29676308-29675947 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 317

Conread position: 306-751
Cow position: chr16:15183803-15184265 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 98

Conread position: 306-753
Cow position: chr16:2239733-2239268 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 48

Conread position: 306-753
Cow position: chr16:7905640-7906083 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 80

Conread position: 306-753
Cow position: chr16:25084618-25085085 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 306-753
Cow position: chr16:49236116-49235687 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 13

Conread position: 307-685
Cow position: chr16:47562693-47563073 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 267
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 17, 27

Conread position: 307-753
Cow position: chr16:25440619-25441082 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 12

Conread position: 307-753
Cow position: chr16:25458470-25458007 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 12

Conread position: 308-724
Cow position: chr16:5888488-5888898 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 284
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 118, 14

Conread position: 310-753
Cow position: chr16:41559678-41560122 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 27

Conread position: 313-499
Cow position: chr16:32935146-32935327 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 97, 0

Conread position: 313-524
Cow position: chr16:10376266-10376057 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 121
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 92, 0

Conread position: 313-695
Cow position: chr16:54647332-54647719 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 21

Conread position: 313-716
Cow position: chr16:11052177-11052585 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 90

Conread position: 313-753
Cow position: chr16:31757-32202 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 10

Conread position: 313-753
Cow position: chr16:36232600-36232151 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 104

Conread position: 315-753
Cow position: chr16:36282405-36282861 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 234

Conread position: 324-753
Cow position: chr16:11111918-11111478 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 294
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 101, 37

Conread position: 338-753
Cow position: chr16:36362318-36361899 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 85

Conread position: 340-753
Cow position: chr16:25187673-25188106 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 411

Conread position: 342-707
Cow position: chr16:16276471-16276092 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 212

Conread position: 347-753
Cow position: chr16:51685482-51685901 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 285
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 158, 57

Conread position: 350-750
Cow position: chr16:56551170-56551581 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 241

Conread position: 350-753
Cow position: chr16:10808208-10808614 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 69

Conread position: 364-753
Cow position: chr16:39820694-39821094 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 50

Conread position: 365-525
Cow position: chr16:56320894-56321055 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 375-753
Cow position: chr16:836097-836493 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 27

Conread position: 396-751
Cow position: chr16:34529413-34529783 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 185

Conread position: 402-753
Cow position: chr16:335395-335755 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 20

Conread position: 405-753
Cow position: chr16:5483418-5483787 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 413-753
Cow position: chr16:42051267-42050923 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 245
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 8, 62

Conread position: 424-753
Cow position: chr16:14666714-14666365 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 517-709
Cow position: chr16:32935380-32935575 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 60, 75

Conread position: 517-718
Cow position: chr16:2728080-2727875 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 58, 0

Conread position: 558-753
Cow position: chr16:44966436-44966632 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 18

Conread position: 596-753
Cow position: chr16:53045654-53045818 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 0

Show alignments to all cow chromosomes.