Cow genome map
| Conread name: | Lng1-LNG010086A07 |
| Conread position: | 289-753 |
| Cow position: | chr21:26638619-26638135 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 294-709 |
| Cow position: | chr21:23860635-23861068 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 291 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 295-497 |
| Cow position: | chr21:40271963-40271766 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 295-746 |
| Cow position: | chr21:145770-146246 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 96 |
| Conread position: | 295-749 |
| Cow position: | chr21:10566529-10566999 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 110 |
| Conread position: | 295-750 |
| Cow position: | chr21:48115958-48116429 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 118 |
| Conread position: | 295-753 |
| Cow position: | chr21:3778618-3779096 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 175 |
| Conread position: | 295-753 |
| Cow position: | chr21:10849930-10850410 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 295-753 |
| Cow position: | chr21:30600065-30599596 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 111 |
| Conread position: | 296-753 |
| Cow position: | chr21:4090503-4090979 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 297-658 |
| Cow position: | chr21:26819163-26818792 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 110 |
| Conread position: | 297-751 |
| Cow position: | chr21:33755152-33755629 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 320 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 298-753 |
| Cow position: | chr21:2530272-2529797 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 298-753 |
| Cow position: | chr21:3426340-3426815 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 299-713 |
| Cow position: | chr21:47035064-47034644 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 92, 46 |
| Conread position: | 299-753 |
| Cow position: | chr21:2510509-2510981 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 107 |
| Conread position: | 299-753 |
| Cow position: | chr21:36714493-36714960 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 37 |
| Conread position: | 300-656 |
| Cow position: | chr21:3615150-3615519 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 57 |
| Conread position: | 300-709 |
| Cow position: | chr21:9891467-9891874 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 110 |
| Conread position: | 300-709 |
| Cow position: | chr21:21031596-21032009 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 300-753 |
| Cow position: | chr21:2883881-2883418 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 108 |
| Conread position: | 300-753 |
| Cow position: | chr21:4222829-4222363 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 30 |
| Conread position: | 301-629 |
| Cow position: | chr21:27708618-27708963 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 301-753 |
| Cow position: | chr21:2476654-2476197 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 207 |
| Conread position: | 301-753 |
| Cow position: | chr21:11453797-11453326 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 105 |
| Conread position: | 301-753 |
| Cow position: | chr21:12056141-12055671 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 301-753 |
| Cow position: | chr21:46915448-46915918 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 21 |
| Conread position: | 303-753 |
| Cow position: | chr21:216168-216618 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 293 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 305-708 |
| Cow position: | chr21:7267675-7267263 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 105 |
| Conread position: | 306-525 |
| Cow position: | chr21:1190903-1191130 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 306-525 |
| Cow position: | chr21:28529681-28529462 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 119, 93 |
| Conread position: | 306-701 |
| Cow position: | chr21:2674776-2674354 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 193 |
| Conread position: | 306-706 |
| Cow position: | chr21:358878-359299 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 187 |
| Conread position: | 306-750 |
| Cow position: | chr21:2501799-2502213 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 306-753 |
| Cow position: | chr21:4183399-4183848 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 306-753 |
| Cow position: | chr21:13124132-13123676 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 12 |
| Conread position: | 306-753 |
| Cow position: | chr21:20744884-20744435 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 22 |
| Conread position: | 306-753 |
| Cow position: | chr21:30561663-30562132 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 306-753 |
| Cow position: | chr21:34292880-34293346 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 306-753 |
| Cow position: | chr21:47939340-47939801 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 210 |
| Conread position: | 307-712 |
| Cow position: | chr21:6699697-6699293 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 15, 121 |
| Conread position: | 307-716 |
| Cow position: | chr21:11505449-11505876 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 99 |
| Conread position: | 307-753 |
| Cow position: | chr21:2541552-2541082 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 298 |
| Conread position: | 308-753 |
| Cow position: | chr21:39424926-39425393 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 307 |
| Conread position: | 309-750 |
| Cow position: | chr21:1292306-1291864 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 23 |
| Conread position: | 310-630 |
| Cow position: | chr21:21517072-21517391 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 311-753 |
| Cow position: | chr21:2416106-2416555 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 311-753 |
| Cow position: | chr21:31559788-31559326 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 257 |
| Conread position: | 313-503 |
| Cow position: | chr21:27624-27805 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 313-700 |
| Cow position: | chr21:34259343-34258957 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 87 |
| Conread position: | 313-753 |
| Cow position: | chr21:4076717-4077169 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 92 |
| Conread position: | 324-684 |
| Cow position: | chr21:2716798-2716425 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 37 |
| Conread position: | 324-753 |
| Cow position: | chr21:35596252-35596698 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 8 |
| Conread position: | 325-753 |
| Cow position: | chr21:4456710-4457156 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 333-716 |
| Cow position: | chr21:2769573-2769172 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 333-750 |
| Cow position: | chr21:47947998-47948435 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 428 |
| Conread position: | 340-753 |
| Cow position: | chr21:37044809-37045240 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 284 |
| Conread position: | 364-753 |
| Cow position: | chr21:2789071-2788662 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 179 |
| Conread position: | 376-749 |
| Cow position: | chr21:26823295-26822906 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 96, 42 |
| Conread position: | 400-753 |
| Cow position: | chr21:21914241-21914615 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 405-746 |
| Cow position: | chr21:4590029-4589668 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 406-752 |
| Cow position: | chr21:23811838-23812204 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 435-753 |
| Cow position: | chr21:6339558-6339896 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 435-753 |
| Cow position: | chr21:8678368-8678030 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 517-753 |
| Cow position: | chr21:40271591-40271347 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 538-753 |
| Cow position: | chr21:1191270-1191493 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 542-753 |
| Cow position: | chr21:3798260-3798041 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 606-753 |
| Cow position: | chr21:26650218-26650371 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.