Cow genome map

Conread name: Lng1-LNG010086A07

Conread position: 290-587
Cow position: chr6:10054258-10054567 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 130, 23

Conread position: 293-702
Cow position: chr6:68362669-68362251 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 83

Conread position: 294-568
Cow position: chr6:21686541-21686821 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 20, 55

Conread position: 295-435
Cow position: chr6:51870-51730 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 118

Conread position: 295-525
Cow position: chr6:64714762-64714994 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 0

Conread position: 295-575
Cow position: chr6:47043785-47043491 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 9, 0

Conread position: 295-639
Cow position: chr6:39437290-39437647 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 220
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 111

Conread position: 295-684
Cow position: chr6:50497806-50497405 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 74

Conread position: 295-716
Cow position: chr6:36525689-36526128 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 295-751
Cow position: chr6:6566259-6566729 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 289

Conread position: 295-751
Cow position: chr6:20561462-20560988 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 94

Conread position: 295-753
Cow position: chr6:701600-702081 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 295-753
Cow position: chr6:3889840-3889353 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 295-753
Cow position: chr6:8201379-8201863 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 343

Conread position: 295-753
Cow position: chr6:8761654-8761178 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 294

Conread position: 295-753
Cow position: chr6:15141528-15141054 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 111

Conread position: 295-753
Cow position: chr6:15280896-15280426 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 177

Conread position: 295-753
Cow position: chr6:17045711-17046181 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 109

Conread position: 295-753
Cow position: chr6:24238694-24239191 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 295-753
Cow position: chr6:29311142-29311617 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 95

Conread position: 295-753
Cow position: chr6:30275536-30275052 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 295-753
Cow position: chr6:35877070-35876592 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 123

Conread position: 295-753
Cow position: chr6:55544680-55544201 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 267

Conread position: 296-753
Cow position: chr6:65927586-65928062 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 113

Conread position: 297-693
Cow position: chr6:10640779-10641188 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 117

Conread position: 297-751
Cow position: chr6:34893360-34892882 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 308

Conread position: 297-753
Cow position: chr6:58409261-58408786 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 145

Conread position: 299-709
Cow position: chr6:40554934-40554516 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 92

Conread position: 299-753
Cow position: chr6:331814-331343 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 185

Conread position: 300-638
Cow position: chr6:1823596-1823245 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 105

Conread position: 300-753
Cow position: chr6:10558988-10558534 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 32

Conread position: 300-753
Cow position: chr6:17598624-17598153 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 105

Conread position: 301-573
Cow position: chr6:13978175-13978458 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 31, 241

Conread position: 301-753
Cow position: chr6:1405584-1405112 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 249

Conread position: 301-753
Cow position: chr6:13103711-13104184 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 151

Conread position: 301-753
Cow position: chr6:26671207-26670732 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 102

Conread position: 301-753
Cow position: chr6:27169229-27169703 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 301-753
Cow position: chr6:28491861-28491388 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 301-753
Cow position: chr6:34127004-34127479 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 141

Conread position: 301-753
Cow position: chr6:43617369-43617841 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 305

Conread position: 301-753
Cow position: chr6:44028703-44029169 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 105

Conread position: 301-753
Cow position: chr6:44150904-44150430 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 301-753
Cow position: chr6:57870351-57869877 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 264

Conread position: 305-749
Cow position: chr6:13943572-13944031 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 97

Conread position: 305-752
Cow position: chr6:34203171-34203623 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 298
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 11, 29

Conread position: 305-753
Cow position: chr6:38231932-38232403 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 32

Conread position: 305-753
Cow position: chr6:65841247-65841710 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 223

Conread position: 305-753
Cow position: chr6:68026440-68026918 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 107

Conread position: 306-525
Cow position: chr6:913290-913507 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 119, 97

Conread position: 306-638
Cow position: chr6:65900252-65899916 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 234
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 12, 97

Conread position: 306-708
Cow position: chr6:42927045-42927460 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 110

Conread position: 306-709
Cow position: chr6:42723262-42722849 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 56

Conread position: 306-712
Cow position: chr6:35433202-35433615 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 274
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 36, 62

Conread position: 306-748
Cow position: chr6:66231473-66231914 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 13

Conread position: 306-750
Cow position: chr6:27468916-27469374 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 100

Conread position: 306-753
Cow position: chr6:2554365-2554832 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 322

Conread position: 306-753
Cow position: chr6:3278293-3277824 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 306-753
Cow position: chr6:5951579-5951120 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 283

Conread position: 306-753
Cow position: chr6:11278038-11277570 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 100

Conread position: 306-753
Cow position: chr6:12093197-12092766 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 30

Conread position: 306-753
Cow position: chr6:19453586-19454042 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 110

Conread position: 306-753
Cow position: chr6:21971331-21971812 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 306-753
Cow position: chr6:27530341-27529881 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 101

Conread position: 306-753
Cow position: chr6:59919622-59919159 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 415

Conread position: 306-753
Cow position: chr6:65822468-65822000 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 306-753
Cow position: chr6:65880524-65880993 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 307-525
Cow position: chr6:42564604-42564822 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 147
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 124, 25

Conread position: 307-692
Cow position: chr6:7141811-7141410 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 11

Conread position: 308-478
Cow position: chr6:2401912-2402083 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 165, 81

Conread position: 308-716
Cow position: chr6:37115799-37116224 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 16

Conread position: 308-751
Cow position: chr6:3488742-3488274 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 33

Conread position: 308-751
Cow position: chr6:35420908-35420483 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 11

Conread position: 308-753
Cow position: chr6:7180007-7179570 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 13

Conread position: 309-750
Cow position: chr6:30478760-30479222 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 24

Conread position: 309-753
Cow position: chr6:2374369-2374826 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 15

Conread position: 310-597
Cow position: chr6:42360016-42359716 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 202
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 106, 22

Conread position: 310-753
Cow position: chr6:6476790-6476363 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 33

Conread position: 313-498
Cow position: chr6:39907815-39908001 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 112, 0

Conread position: 313-499
Cow position: chr6:65007508-65007690 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 105

Conread position: 313-559
Cow position: chr6:52804082-52804332 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 109, 29

Conread position: 315-753
Cow position: chr6:16672052-16672506 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 296
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 22, 102

Conread position: 315-753
Cow position: chr6:28063009-28063462 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 102

Conread position: 316-591
Cow position: chr6:65909095-65909382 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 109, 0

Conread position: 323-669
Cow position: chr6:2885898-2886246 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 79

Conread position: 331-707
Cow position: chr6:62396853-62397232 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 267
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 151, 15

Conread position: 331-716
Cow position: chr6:33388520-33388915 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 68

Conread position: 338-753
Cow position: chr6:59741358-59740932 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 77

Conread position: 353-731
Cow position: chr6:37642105-37642500 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 74

Conread position: 355-750
Cow position: chr6:13317776-13317366 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 52

Conread position: 359-701
Cow position: chr6:28474422-28474771 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 230
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 13, 49

Conread position: 388-750
Cow position: chr6:13276543-13276923 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 266
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 34, 39

Conread position: 392-753
Cow position: chr6:16051631-16052006 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 394-753
Cow position: chr6:13846792-13847161 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 249
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 29, 184

Conread position: 396-753
Cow position: chr6:33459612-33459989 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 242

Conread position: 431-753
Cow position: chr6:32330993-32330664 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 229
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 133, 48

Conread position: 439-753
Cow position: chr6:43793965-43793643 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 47

Conread position: 457-753
Cow position: chr6:25214078-25214384 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 5, 41

Conread position: 515-753
Cow position: chr6:7866871-7866625 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 60, 0

Conread position: 523-753
Cow position: chr6:1412050-1411814 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 52, 13

Conread position: 535-753
Cow position: chr6:3148905-3149130 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 42, 0

Conread position: 542-751
Cow position: chr6:64715138-64715353 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 163
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 35, 8

Conread position: 547-753
Cow position: chr6:39908441-39908653 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 27, 0

Conread position: 566-716
Cow position: chr6:47043271-47043119 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 92, 0

Conread position: 590-750
Cow position: chr6:40315014-40315176 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 124, 23

Show alignments to all cow chromosomes.