Cow genome map
| Conread name: | Lng1-LNG010103A02 |
| Conread position: | 242-735 |
| Cow position: | chr13:32525579-32525103 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 421, 15 |
| Conread position: | 242-754 |
| Cow position: | chr13:54283750-54284243 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 183 |
| Conread position: | 246-585 |
| Cow position: | chr13:33279184-33278854 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 247-573 |
| Cow position: | chr13:15081005-15080695 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 98, 109 |
| Conread position: | 247-729 |
| Cow position: | chr13:34867904-34868404 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 18 |
| Conread position: | 248-724 |
| Cow position: | chr13:48356491-48356953 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 249-624 |
| Cow position: | chr13:61951353-61951719 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 91 |
| Conread position: | 250-758 |
| Cow position: | chr13:15542635-15543130 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 15 |
| Conread position: | 251-739 |
| Cow position: | chr13:33337149-33336677 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 17 |
| Conread position: | 251-743 |
| Cow position: | chr13:30302243-30302716 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 251-747 |
| Cow position: | chr13:34043192-34042711 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 251-749 |
| Cow position: | chr13:1593985-1593498 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 14 |
| Conread position: | 251-749 |
| Cow position: | chr13:31613165-31612680 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 17 |
| Conread position: | 251-749 |
| Cow position: | chr13:32544124-32544596 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 14 |
| Conread position: | 251-749 |
| Cow position: | chr13:32738637-32738165 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 14 |
| Conread position: | 251-754 |
| Cow position: | chr13:15925213-15924722 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 14 |
| Conread position: | 251-759 |
| Cow position: | chr13:3655137-3654645 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 14 |
| Conread position: | 251-759 |
| Cow position: | chr13:15521352-15520848 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 258-754 |
| Cow position: | chr13:31831795-31832262 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 67 |
| Conread position: | 261-393 |
| Cow position: | chr13:34936036-34936168 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 95, 129 |
| Conread position: | 261-438 |
| Cow position: | chr13:34692363-34692540 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 171, 118 |
| Conread position: | 261-452 |
| Cow position: | chr13:62328392-62328201 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 261-608 |
| Cow position: | chr13:49972860-49973229 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 122, 153 |
| Conread position: | 261-754 |
| Cow position: | chr13:3276344-3276818 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 83 |
| Conread position: | 261-754 |
| Cow position: | chr13:33825550-33825069 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 217 |
| Conread position: | 261-755 |
| Cow position: | chr13:2305683-2306164 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 304 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 420, 16 |
| Conread position: | 261-755 |
| Cow position: | chr13:34187509-34187026 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 162 |
| Conread position: | 268-749 |
| Cow position: | chr13:9043717-9044166 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 100 |
| Conread position: | 268-759 |
| Cow position: | chr13:4940270-4940752 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 92 |
| Conread position: | 280-749 |
| Cow position: | chr13:35756432-35756896 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 76 |
| Conread position: | 290-545 |
| Cow position: | chr13:13323984-13324252 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 100, 124 |
| Conread position: | 290-753 |
| Cow position: | chr13:30245552-30245073 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 185 |
| Conread position: | 290-753 |
| Cow position: | chr13:31734898-31734420 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 124 |
| Conread position: | 290-754 |
| Cow position: | chr13:6668935-6668463 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 184 |
| Conread position: | 290-754 |
| Cow position: | chr13:34326485-34326017 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 135 |
| Conread position: | 294-736 |
| Cow position: | chr13:30140197-30140636 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 299-770 |
| Cow position: | chr13:35029712-35030190 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 178 |
| Conread position: | 308-739 |
| Cow position: | chr13:4481708-4482122 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 62 |
| Conread position: | 308-753 |
| Cow position: | chr13:2297599-2297138 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 106 |
| Conread position: | 309-755 |
| Cow position: | chr13:20543140-20542704 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 12 |
| Conread position: | 336-621 |
| Cow position: | chr13:41606956-41607230 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 356-595 |
| Cow position: | chr13:676228-676464 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 356-660 |
| Cow position: | chr13:53834033-53834336 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 356-748 |
| Cow position: | chr13:2389535-2389150 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 114 |
| Conread position: | 356-753 |
| Cow position: | chr13:4872339-4872737 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 115 |
| Conread position: | 356-753 |
| Cow position: | chr13:17307746-17308135 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 114 |
| Conread position: | 356-753 |
| Cow position: | chr13:21840935-21840534 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 114 |
| Conread position: | 356-753 |
| Cow position: | chr13:32986781-32986389 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 14 |
| Conread position: | 358-749 |
| Cow position: | chr13:50108730-50109119 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 361-735 |
| Cow position: | chr13:60704248-60703890 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 202, 29 |
| Conread position: | 391-753 |
| Cow position: | chr13:2231969-2232319 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 391-754 |
| Cow position: | chr13:2909143-2908788 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 403-750 |
| Cow position: | chr13:46733036-46732699 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 406-750 |
| Cow position: | chr13:30237489-30237832 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 55 |
| Conread position: | 426-754 |
| Cow position: | chr13:34936472-34936803 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 12 |
| Conread position: | 431-754 |
| Cow position: | chr13:13046485-13046162 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 234 |
| Conread position: | 431-754 |
| Cow position: | chr13:30657625-30657304 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 431-754 |
| Cow position: | chr13:62328243-62327921 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 39 |
| Conread position: | 444-750 |
| Cow position: | chr13:34912015-34911712 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 27 |
| Conread position: | 463-754 |
| Cow position: | chr13:33928179-33927902 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 463-754 |
| Cow position: | chr13:34143292-34142997 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 472-753 |
| Cow position: | chr13:3058617-3058332 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 475-754 |
| Cow position: | chr13:34692549-34692823 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 22 |
| Conread position: | 496-735 |
| Cow position: | chr13:60701866-60701635 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 575-719 |
| Cow position: | chr13:32606694-32606548 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 82, 5 |
| Conread position: | 601-770 |
| Cow position: | chr13:13324262-13324430 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 145, 61 |
Show alignments to all cow chromosomes.