Cow genome map
| Conread name: | Lng1-LNG010103A02 |
| Conread position: | 236-749 |
| Cow position: | chr16:40297487-40296989 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 29 |
| Conread position: | 241-613 |
| Cow position: | chr16:5588891-5589247 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 241-753 |
| Cow position: | chr16:4303807-4303280 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 243 |
| Conread position: | 245-739 |
| Cow position: | chr16:49257903-49257402 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 246-710 |
| Cow position: | chr16:29981964-29982416 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 246-741 |
| Cow position: | chr16:18688438-18687941 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 218 |
| Conread position: | 246-749 |
| Cow position: | chr16:25440308-25440805 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 124 |
| Conread position: | 246-759 |
| Cow position: | chr16:408338-407836 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 124 |
| Conread position: | 247-749 |
| Cow position: | chr16:7676997-7676510 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 18 |
| Conread position: | 247-760 |
| Cow position: | chr16:12539226-12538727 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 18 |
| Conread position: | 248-593 |
| Cow position: | chr16:12302763-12302403 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 225 |
| Conread position: | 248-755 |
| Cow position: | chr16:49236421-49235922 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 23 |
| Conread position: | 250-534 |
| Cow position: | chr16:37446647-37446384 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 251-545 |
| Cow position: | chr16:2412314-2412037 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 251-634 |
| Cow position: | chr16:14667087-14666719 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 251-748 |
| Cow position: | chr16:15565454-15565935 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 14 |
| Conread position: | 251-749 |
| Cow position: | chr16:1568742-1568267 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 14 |
| Conread position: | 251-749 |
| Cow position: | chr16:2484436-2483953 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 251-749 |
| Cow position: | chr16:8817404-8816919 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 251-749 |
| Cow position: | chr16:25458773-25458284 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 14 |
| Conread position: | 251-750 |
| Cow position: | chr16:28472395-28471908 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 251-754 |
| Cow position: | chr16:42051647-42051183 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 251-755 |
| Cow position: | chr16:10204715-10204225 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 14 |
| Conread position: | 251-759 |
| Cow position: | chr16:29045732-29046217 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 251-768 |
| Cow position: | chr16:9776838-9777339 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 254-749 |
| Cow position: | chr16:15183511-15183989 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 261-753 |
| Cow position: | chr16:31439-31939 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 160 |
| Conread position: | 261-753 |
| Cow position: | chr16:5660550-5661052 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 153 |
| Conread position: | 261-753 |
| Cow position: | chr16:16687579-16688062 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 261-754 |
| Cow position: | chr16:32934847-32935327 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 211 |
| Conread position: | 261-755 |
| Cow position: | chr16:36232893-36232412 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 135 |
| Conread position: | 261-759 |
| Cow position: | chr16:1429927-1430421 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 109 |
| Conread position: | 261-759 |
| Cow position: | chr16:20255589-20255114 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 79 |
| Conread position: | 271-588 |
| Cow position: | chr16:51083289-51083596 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 274, 88 |
| Conread position: | 271-748 |
| Cow position: | chr16:29031634-29032100 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 147 |
| Conread position: | 280-749 |
| Cow position: | chr16:2728587-2728128 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 62 |
| Conread position: | 290-727 |
| Cow position: | chr16:10376558-10376109 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 131 |
| Conread position: | 294-770 |
| Cow position: | chr16:25084359-25084831 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 138 |
| Conread position: | 308-749 |
| Cow position: | chr16:43898512-43898082 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 62 |
| Conread position: | 308-760 |
| Cow position: | chr16:25340732-25341165 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 324-754 |
| Cow position: | chr16:31593143-31592714 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 46 |
| Conread position: | 334-747 |
| Cow position: | chr16:23253726-23253319 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 9 |
| Conread position: | 356-753 |
| Cow position: | chr16:5918273-5918676 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 117 |
| Conread position: | 356-753 |
| Cow position: | chr16:6942414-6942814 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 114 |
| Conread position: | 356-753 |
| Cow position: | chr16:28171568-28171169 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 115 |
| Conread position: | 356-753 |
| Cow position: | chr16:32605617-32606018 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 356-754 |
| Cow position: | chr16:51685240-51685625 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 356-767 |
| Cow position: | chr16:21185073-21185485 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 114 |
| Conread position: | 357-753 |
| Cow position: | chr16:25157419-25157028 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 86 |
| Conread position: | 360-749 |
| Cow position: | chr16:24881893-24881503 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 371-732 |
| Cow position: | chr16:14669099-14669464 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 375-749 |
| Cow position: | chr16:15491532-15491894 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 57 |
| Conread position: | 387-758 |
| Cow position: | chr16:11051995-11052363 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 391-754 |
| Cow position: | chr16:29676477-29676114 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 19 |
| Conread position: | 401-759 |
| Cow position: | chr16:5888339-5888680 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 148, 60 |
| Conread position: | 402-752 |
| Cow position: | chr16:9929394-9929735 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 167, 66 |
| Conread position: | 402-754 |
| Cow position: | chr16:44964888-44965249 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 136 |
| Conread position: | 407-754 |
| Cow position: | chr16:2239882-2239542 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 8 |
| Conread position: | 410-670 |
| Cow position: | chr16:15369287-15369539 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 253, 124 |
| Conread position: | 410-754 |
| Cow position: | chr16:40887418-40887063 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 426-758 |
| Cow position: | chr16:54647196-54647522 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 42 |
| Conread position: | 430-730 |
| Cow position: | chr16:14422582-14422883 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 229, 38 |
| Conread position: | 431-754 |
| Cow position: | chr16:47562561-47562877 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 17, 39 |
| Conread position: | 434-754 |
| Cow position: | chr16:19713978-19713657 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 34 |
| Conread position: | 442-749 |
| Cow position: | chr16:26662630-26662934 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 444-739 |
| Cow position: | chr16:10437137-10437431 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 447-755 |
| Cow position: | chr16:42740533-42740227 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 22 |
| Conread position: | 463-744 |
| Cow position: | chr16:36282294-36282582 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 463-750 |
| Cow position: | chr16:7905541-7905830 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 176 |
| Conread position: | 466-758 |
| Cow position: | chr16:6549620-6549326 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 140 |
| Conread position: | 467-631 |
| Cow position: | chr16:39818526-39818692 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 467-749 |
| Cow position: | chr16:23982213-23982498 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 468-749 |
| Cow position: | chr16:27734902-27734618 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 470-767 |
| Cow position: | chr16:52815710-52815428 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 290, 68 |
| Conread position: | 502-736 |
| Cow position: | chr16:55080415-55080182 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 83, 51 |
| Conread position: | 548-749 |
| Cow position: | chr16:16276523-16276318 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 552-749 |
| Cow position: | chr16:2411983-2411783 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 557-754 |
| Cow position: | chr16:10808162-10808354 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 173, 10 |
| Conread position: | 592-753 |
| Cow position: | chr16:25187669-25187833 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 85, 5 |
| Conread position: | 600-754 |
| Cow position: | chr16:36362313-36362158 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 83, 64 |
| Conread position: | 609-755 |
| Cow position: | chr16:56551172-56551321 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.