Cow genome map
| Conread name: | Lng1-LNG010103A02 |
| Conread position: | 238-749 |
| Cow position: | chr17:11088474-11087961 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 239-753 |
| Cow position: | chr17:2249321-2248813 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 103 |
| Conread position: | 241-749 |
| Cow position: | chr17:40803656-40804160 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 150 |
| Conread position: | 248-743 |
| Cow position: | chr17:2146492-2146959 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 333 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 13, 142 |
| Conread position: | 250-753 |
| Cow position: | chr17:2261361-2261878 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 230 |
| Conread position: | 251-671 |
| Cow position: | chr17:6258985-6259383 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 251-739 |
| Cow position: | chr17:18104403-18103927 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 251-749 |
| Cow position: | chr17:2578842-2579321 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 14 |
| Conread position: | 251-749 |
| Cow position: | chr17:13857508-13857006 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 14 |
| Conread position: | 251-766 |
| Cow position: | chr17:15322114-15322606 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 481, 14 |
| Conread position: | 254-749 |
| Cow position: | chr17:13928962-13929431 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 11 |
| Conread position: | 255-759 |
| Cow position: | chr17:1284470-1283990 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 85 |
| Conread position: | 258-452 |
| Cow position: | chr17:455573-455379 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 258-754 |
| Cow position: | chr17:4080927-4081417 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 58 |
| Conread position: | 259-623 |
| Cow position: | chr17:18302477-18302139 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 100, 19 |
| Conread position: | 260-753 |
| Cow position: | chr17:6089867-6089393 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 9 |
| Conread position: | 261-438 |
| Cow position: | chr17:27345106-27345284 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 261-662 |
| Cow position: | chr17:31200786-31200392 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 264 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 309, 132 |
| Conread position: | 261-753 |
| Cow position: | chr17:229037-228534 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 153 |
| Conread position: | 261-753 |
| Cow position: | chr17:15144107-15143601 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 353 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 129, 81 |
| Conread position: | 261-753 |
| Cow position: | chr17:20666468-20665958 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 153 |
| Conread position: | 261-753 |
| Cow position: | chr17:24780305-24780816 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 24 |
| Conread position: | 268-749 |
| Cow position: | chr17:16860279-16859793 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 50 |
| Conread position: | 268-749 |
| Cow position: | chr17:19270054-19269603 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 92 |
| Conread position: | 271-754 |
| Cow position: | chr17:15370380-15370845 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 130 |
| Conread position: | 289-758 |
| Cow position: | chr17:153146-152699 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 299-739 |
| Cow position: | chr17:4059424-4059860 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 44 |
| Conread position: | 308-629 |
| Cow position: | chr17:180929-181257 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 325-757 |
| Cow position: | chr17:20401022-20401454 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 67 |
| Conread position: | 335-749 |
| Cow position: | chr17:3643486-3643073 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 25 |
| Conread position: | 356-749 |
| Cow position: | chr17:1383443-1383051 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 356-753 |
| Cow position: | chr17:8208478-8208875 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 224 |
| Conread position: | 356-753 |
| Cow position: | chr17:9654081-9653688 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 114 |
| Conread position: | 356-753 |
| Cow position: | chr17:11782739-11783139 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 114 |
| Conread position: | 356-753 |
| Cow position: | chr17:14217657-14217256 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 115 |
| Conread position: | 356-753 |
| Cow position: | chr17:15157583-15157193 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 45 |
| Conread position: | 356-753 |
| Cow position: | chr17:22160284-22160684 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 114 |
| Conread position: | 356-753 |
| Cow position: | chr17:24633325-24633722 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 114 |
| Conread position: | 356-753 |
| Cow position: | chr17:43987888-43988303 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 116 |
| Conread position: | 356-754 |
| Cow position: | chr17:249297-249683 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 357-644 |
| Cow position: | chr17:6119520-6119806 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 367-573 |
| Cow position: | chr17:3710818-3710613 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 182, 101 |
| Conread position: | 374-589 |
| Cow position: | chr17:31768884-31768670 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 379-772 |
| Cow position: | chr17:14326108-14325707 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 388-671 |
| Cow position: | chr17:22131341-22131623 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 391-611 |
| Cow position: | chr17:18186819-18186605 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 403-754 |
| Cow position: | chr17:4294812-4295135 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 407-662 |
| Cow position: | chr17:55259-55009 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 8 |
| Conread position: | 409-749 |
| Cow position: | chr17:25737085-25737426 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 59 |
| Conread position: | 424-736 |
| Cow position: | chr17:19609463-19609158 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 144 |
| Conread position: | 434-754 |
| Cow position: | chr17:14308859-14308534 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 115, 37 |
| Conread position: | 439-753 |
| Cow position: | chr17:15435246-15435558 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 31 |
| Conread position: | 439-754 |
| Cow position: | chr17:39933139-39933450 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 441-754 |
| Cow position: | chr17:28109549-28109854 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 16 |
| Conread position: | 442-605 |
| Cow position: | chr17:1945631-1945794 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 128, 144 |
| Conread position: | 463-703 |
| Cow position: | chr17:32024721-32024479 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 463-753 |
| Cow position: | chr17:22430003-22429715 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 53 |
| Conread position: | 463-754 |
| Cow position: | chr17:16889605-16889893 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 53 |
| Conread position: | 463-754 |
| Cow position: | chr17:23857576-23857266 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 463-756 |
| Cow position: | chr17:27345282-27345575 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 155 |
| Conread position: | 466-754 |
| Cow position: | chr17:2286854-2287157 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 466-758 |
| Cow position: | chr17:35591702-35591987 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 34 |
| Conread position: | 487-754 |
| Cow position: | chr17:2173381-2173648 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 176, 10 |
| Conread position: | 491-672 |
| Cow position: | chr17:20088253-20088069 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 507-766 |
| Cow position: | chr17:42264042-42264298 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 515-755 |
| Cow position: | chr17:2737905-2738147 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 70 |
| Conread position: | 519-747 |
| Cow position: | chr17:15849931-15850159 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 575-755 |
| Cow position: | chr17:20183640-20183458 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 148 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 28, 90 |
| Conread position: | 600-754 |
| Cow position: | chr17:18185913-18185756 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 600-755 |
| Cow position: | chr17:1946587-1946747 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.