Cow genome map
| Conread name: | Lng1-LNG010103A02 |
| Conread position: | 244-749 |
| Cow position: | chr18:28974422-28973932 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 127 |
| Conread position: | 246-749 |
| Cow position: | chr18:27838817-27838332 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 19 |
| Conread position: | 246-753 |
| Cow position: | chr18:35334973-35335464 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 246-754 |
| Cow position: | chr18:16177133-16176630 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 19 |
| Conread position: | 246-759 |
| Cow position: | chr18:37504546-37505044 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 19 |
| Conread position: | 247-742 |
| Cow position: | chr18:54001948-54002456 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 249-422 |
| Cow position: | chr18:54172597-54172421 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 249-553 |
| Cow position: | chr18:43200272-43200566 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 11, 122 |
| Conread position: | 251-673 |
| Cow position: | chr18:14129780-14130185 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 251-749 |
| Cow position: | chr18:23797136-23797620 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 251-749 |
| Cow position: | chr18:41841340-41840854 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 251-759 |
| Cow position: | chr18:36507818-36508314 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 254-611 |
| Cow position: | chr18:29236253-29236609 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 254-755 |
| Cow position: | chr18:54024880-54024373 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 458, 15 |
| Conread position: | 255-575 |
| Cow position: | chr18:29762966-29763280 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 133, 120 |
| Conread position: | 255-754 |
| Cow position: | chr18:16660521-16660029 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 14 |
| Conread position: | 261-463 |
| Cow position: | chr18:30198166-30198367 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 261-753 |
| Cow position: | chr18:51659887-51660393 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 227 |
| Conread position: | 261-753 |
| Cow position: | chr18:55089464-55088949 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 221 |
| Conread position: | 261-754 |
| Cow position: | chr18:33358368-33358843 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 99 |
| Conread position: | 261-754 |
| Cow position: | chr18:43147419-43146948 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 73 |
| Conread position: | 266-430 |
| Cow position: | chr18:39748097-39748261 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-754 |
| Cow position: | chr18:33335365-33335844 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 268-749 |
| Cow position: | chr18:25349541-25350010 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 77 |
| Conread position: | 268-749 |
| Cow position: | chr18:51480340-51480808 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 274-753 |
| Cow position: | chr18:45958204-45958658 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 36 |
| Conread position: | 290-753 |
| Cow position: | chr18:11275593-11275130 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 290-753 |
| Cow position: | chr18:16078197-16078675 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 356-595 |
| Cow position: | chr18:23746396-23746158 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 356-753 |
| Cow position: | chr18:19351953-19352362 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 115 |
| Conread position: | 356-753 |
| Cow position: | chr18:33953994-33953592 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 356-753 |
| Cow position: | chr18:37586087-37585688 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 114 |
| Conread position: | 356-753 |
| Cow position: | chr18:44621334-44621735 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 70 |
| Conread position: | 356-753 |
| Cow position: | chr18:47741594-47741994 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 114 |
| Conread position: | 375-623 |
| Cow position: | chr18:42244950-42244713 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 391-754 |
| Cow position: | chr18:48221490-48221853 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 396-736 |
| Cow position: | chr18:9187146-9186807 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 397-754 |
| Cow position: | chr18:51310201-51310558 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 399-739 |
| Cow position: | chr18:32293392-32293736 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 402-771 |
| Cow position: | chr18:37599907-37599533 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 404-756 |
| Cow position: | chr18:14415600-14415954 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 67 |
| Conread position: | 407-753 |
| Cow position: | chr18:54172216-54171868 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 92 |
| Conread position: | 431-754 |
| Cow position: | chr18:23944720-23944395 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 37 |
| Conread position: | 439-731 |
| Cow position: | chr18:29899986-29900271 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 450-753 |
| Cow position: | chr18:22602157-22602463 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 20 |
| Conread position: | 461-750 |
| Cow position: | chr18:2019999-2019714 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 461-750 |
| Cow position: | chr18:40478065-40478354 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 75 |
| Conread position: | 463-714 |
| Cow position: | chr18:47719887-47719633 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 203 |
| Conread position: | 463-732 |
| Cow position: | chr18:33268526-33268795 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 46 |
| Conread position: | 463-750 |
| Cow position: | chr18:1520810-1521103 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 463-754 |
| Cow position: | chr18:17992879-17992586 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 182 |
| Conread position: | 463-756 |
| Cow position: | chr18:39748266-39748556 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 466-728 |
| Cow position: | chr18:51257668-51257933 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 467-749 |
| Cow position: | chr18:32651682-32651966 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 224 |
| Conread position: | 475-749 |
| Cow position: | chr18:27986723-27986998 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 251 |
| Conread position: | 486-754 |
| Cow position: | chr18:19540165-19539899 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 173, 50 |
| Conread position: | 521-753 |
| Cow position: | chr18:51464731-51464501 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 229, 150 |
| Conread position: | 521-753 |
| Cow position: | chr18:51610746-51610965 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 229, 139 |
| Conread position: | 550-754 |
| Cow position: | chr18:16533752-16533955 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 98 |
| Conread position: | 569-748 |
| Cow position: | chr18:6869467-6869287 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 87 |
| Conread position: | 600-759 |
| Cow position: | chr18:53785660-53785820 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.