Cow genome map
| Conread name: | Lng1-LNG010103A02 |
| Conread position: | 232-756 |
| Cow position: | chr21:2501481-2501988 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 37 |
| Conread position: | 236-749 |
| Cow position: | chr21:33250945-33251443 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 32 |
| Conread position: | 246-753 |
| Cow position: | chr21:444692-445183 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 326 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 248-754 |
| Cow position: | chr21:358581-359072 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 250-621 |
| Cow position: | chr21:39580249-39580642 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 250-753 |
| Cow position: | chr21:11505116-11505643 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 241 |
| Conread position: | 251-550 |
| Cow position: | chr21:2542313-2542023 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 251-597 |
| Cow position: | chr21:41952743-41953078 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 251-748 |
| Cow position: | chr21:2884171-2883698 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 251-749 |
| Cow position: | chr21:1190608-1191099 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 251-749 |
| Cow position: | chr21:10566244-10566725 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 14 |
| Conread position: | 251-749 |
| Cow position: | chr21:10849645-10850131 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 253-749 |
| Cow position: | chr21:40272244-40271769 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 12 |
| Conread position: | 253-754 |
| Cow position: | chr21:3778341-3778822 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 12 |
| Conread position: | 253-759 |
| Cow position: | chr21:31560080-31559593 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 12 |
| Conread position: | 259-753 |
| Cow position: | chr21:7267965-7267488 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 259-755 |
| Cow position: | chr21:2415804-2416293 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 142 |
| Conread position: | 261-463 |
| Cow position: | chr21:29086082-29086276 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 93, 56 |
| Conread position: | 261-754 |
| Cow position: | chr21:4183097-4183580 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 170 |
| Conread position: | 261-754 |
| Cow position: | chr21:4590396-4589934 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 261-754 |
| Cow position: | chr21:34259629-34259163 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 115 |
| Conread position: | 261-754 |
| Cow position: | chr21:35595963-35596424 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 105 |
| Conread position: | 261-755 |
| Cow position: | chr21:2769885-2769404 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 103 |
| Conread position: | 261-758 |
| Cow position: | chr21:2717084-2716621 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 55 |
| Conread position: | 263-747 |
| Cow position: | chr21:48115682-48116157 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 112 |
| Conread position: | 267-753 |
| Cow position: | chr21:12056444-12055944 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 209 |
| Conread position: | 268-754 |
| Cow position: | chr21:47947665-47948165 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 50 |
| Conread position: | 272-587 |
| Cow position: | chr21:35089276-35089588 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 34, 128 |
| Conread position: | 290-769 |
| Cow position: | chr21:1292579-1292105 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 99 |
| Conread position: | 299-703 |
| Cow position: | chr21:5016448-5016023 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 296 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 95, 115 |
| Conread position: | 311-749 |
| Cow position: | chr21:145543-145970 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 33 |
| Conread position: | 312-755 |
| Cow position: | chr21:39282112-39281666 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 356-583 |
| Cow position: | chr21:2454375-2454600 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 356-595 |
| Cow position: | chr21:19609772-19610010 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 356-749 |
| Cow position: | chr21:4090305-4090702 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 115 |
| Conread position: | 356-749 |
| Cow position: | chr21:26819357-26818970 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 87 |
| Conread position: | 356-753 |
| Cow position: | chr21:2476851-2476454 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 114 |
| Conread position: | 356-753 |
| Cow position: | chr21:2510313-2510708 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 114 |
| Conread position: | 356-753 |
| Cow position: | chr21:17572586-17572977 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 114 |
| Conread position: | 356-753 |
| Cow position: | chr21:27708418-27708818 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 114 |
| Conread position: | 356-753 |
| Cow position: | chr21:28529886-28529488 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 114 |
| Conread position: | 356-753 |
| Cow position: | chr21:37044578-37044969 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 114 |
| Conread position: | 356-753 |
| Cow position: | chr21:39424725-39425119 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 356-753 |
| Cow position: | chr21:46915248-46915643 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 114 |
| Conread position: | 356-770 |
| Cow position: | chr21:26638800-26638390 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 114 |
| Conread position: | 366-753 |
| Cow position: | chr21:11453987-11453600 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 104 |
| Conread position: | 379-754 |
| Cow position: | chr21:21516890-21517259 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 388-754 |
| Cow position: | chr21:4223003-4222631 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 391-754 |
| Cow position: | chr21:2530435-2530071 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 392-658 |
| Cow position: | chr21:18692442-18692716 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 399-754 |
| Cow position: | chr21:4083358-4083702 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 230, 13 |
| Conread position: | 401-724 |
| Cow position: | chr21:47939181-47939507 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 28 |
| Conread position: | 401-753 |
| Cow position: | chr21:21948096-21947747 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 53, 73 |
| Conread position: | 401-759 |
| Cow position: | chr21:3614993-3615353 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 402-732 |
| Cow position: | chr21:23860484-23860817 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 410-769 |
| Cow position: | chr21:30600203-30599848 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 57 |
| Conread position: | 431-754 |
| Cow position: | chr21:3426217-3426541 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 41 |
| Conread position: | 434-754 |
| Cow position: | chr21:34292753-34293075 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 18 |
| Conread position: | 444-608 |
| Cow position: | chr21:23811657-23811817 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 457-772 |
| Cow position: | chr21:9891369-9891676 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 81 |
| Conread position: | 462-754 |
| Cow position: | chr21:2674876-2674572 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 293 |
| Conread position: | 463-719 |
| Cow position: | chr21:21031502-21031757 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 97, 105 |
| Conread position: | 463-754 |
| Cow position: | chr21:4076609-4076901 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 463-754 |
| Cow position: | chr21:13124234-13123943 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 49 |
| Conread position: | 465-744 |
| Cow position: | chr21:30561566-30561848 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 475-756 |
| Cow position: | chr21:2789207-2788933 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 116 |
| Conread position: | 489-753 |
| Cow position: | chr21:36714428-36714689 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 61, 46 |
| Conread position: | 567-755 |
| Cow position: | chr21:2541550-2541356 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 569-755 |
| Cow position: | chr21:27625-27802 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 600-754 |
| Cow position: | chr21:4456729-4456883 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 20 |
Show alignments to all cow chromosomes.