Cow genome map
| Conread name: | Lng1-LNG010103A02 |
| Conread position: | 14-753 |
| Cow position: | chr24:8029377-8030120 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 649, 0 |
| Conread position: | 236-759 |
| Cow position: | chr24:19832848-19833355 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 238-759 |
| Cow position: | chr24:1447052-1447534 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 343 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 239-712 |
| Cow position: | chr24:6537017-6537488 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 239-753 |
| Cow position: | chr24:22792627-22793143 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 83 |
| Conread position: | 243-754 |
| Cow position: | chr24:6335154-6335664 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 251-518 |
| Cow position: | chr24:9544309-9544557 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 251-618 |
| Cow position: | chr24:149113-148762 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 251-648 |
| Cow position: | chr24:29186283-29186666 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 14 |
| Conread position: | 251-749 |
| Cow position: | chr24:4416047-4415561 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 14 |
| Conread position: | 251-753 |
| Cow position: | chr24:12161362-12161847 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 49 |
| Conread position: | 251-754 |
| Cow position: | chr24:12132004-12131515 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 302 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 111, 14 |
| Conread position: | 251-754 |
| Cow position: | chr24:16649836-16649331 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 14 |
| Conread position: | 258-754 |
| Cow position: | chr24:33739892-33739375 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 155 |
| Conread position: | 260-771 |
| Cow position: | chr24:39677928-39678418 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 261-474 |
| Cow position: | chr24:36560754-36560535 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 261-710 |
| Cow position: | chr24:12225002-12224555 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 129, 153 |
| Conread position: | 261-753 |
| Cow position: | chr24:13021157-13021637 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 487, 114 |
| Conread position: | 261-754 |
| Cow position: | chr24:6144846-6145329 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 92 |
| Conread position: | 261-755 |
| Cow position: | chr24:12236538-12237024 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 261-756 |
| Cow position: | chr24:13532034-13531565 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 163 |
| Conread position: | 261-757 |
| Cow position: | chr24:12289235-12288755 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 265-754 |
| Cow position: | chr24:15392820-15392340 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 101 |
| Conread position: | 269-755 |
| Cow position: | chr24:12798264-12797794 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 131 |
| Conread position: | 271-703 |
| Cow position: | chr24:37216215-37216651 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 154 |
| Conread position: | 276-744 |
| Cow position: | chr24:17187057-17187505 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 115 |
| Conread position: | 290-754 |
| Cow position: | chr24:33932865-33933335 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 184 |
| Conread position: | 299-622 |
| Cow position: | chr24:17314798-17314479 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 309-759 |
| Cow position: | chr24:14385086-14384639 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 310-753 |
| Cow position: | chr24:16085171-16084691 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 329 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 90, 177 |
| Conread position: | 311-735 |
| Cow position: | chr24:32125959-32125562 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 356-635 |
| Cow position: | chr24:7712722-7712451 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 174, 114 |
| Conread position: | 356-693 |
| Cow position: | chr24:5993401-5993069 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 114 |
| Conread position: | 356-703 |
| Cow position: | chr24:20267787-20268136 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 114 |
| Conread position: | 356-753 |
| Cow position: | chr24:6025527-6025126 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 114 |
| Conread position: | 356-753 |
| Cow position: | chr24:6433807-6434210 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 114 |
| Conread position: | 356-753 |
| Cow position: | chr24:6644987-6645384 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 114 |
| Conread position: | 356-753 |
| Cow position: | chr24:7060681-7061070 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 109 |
| Conread position: | 356-753 |
| Cow position: | chr24:9189161-9188762 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 114 |
| Conread position: | 356-753 |
| Cow position: | chr24:44017115-44017515 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 114 |
| Conread position: | 356-770 |
| Cow position: | chr24:12114460-12114053 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 30 |
| Conread position: | 358-683 |
| Cow position: | chr24:32330920-32331235 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 217, 37 |
| Conread position: | 366-753 |
| Cow position: | chr24:6083596-6083986 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 107 |
| Conread position: | 391-704 |
| Cow position: | chr24:37301465-37301162 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 395-735 |
| Cow position: | chr24:6047861-6048205 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 395-758 |
| Cow position: | chr24:14873733-14873369 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 401-753 |
| Cow position: | chr24:36707475-36707818 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 160, 61 |
| Conread position: | 403-736 |
| Cow position: | chr24:35841986-35841662 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 252, 65 |
| Conread position: | 403-758 |
| Cow position: | chr24:36296783-36297133 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 161 |
| Conread position: | 406-735 |
| Cow position: | chr24:14885623-14885290 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 157, 13 |
| Conread position: | 406-749 |
| Cow position: | chr24:12085823-12086162 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 34 |
| Conread position: | 412-750 |
| Cow position: | chr24:6351818-6352161 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 60 |
| Conread position: | 426-703 |
| Cow position: | chr24:35991012-35990743 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 257, 42 |
| Conread position: | 430-753 |
| Cow position: | chr24:13181693-13181381 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 38 |
| Conread position: | 433-730 |
| Cow position: | chr24:12207790-12208084 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 130, 35 |
| Conread position: | 444-770 |
| Cow position: | chr24:13187852-13188173 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 26 |
| Conread position: | 463-603 |
| Cow position: | chr24:14583774-14583914 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-732 |
| Cow position: | chr24:13318913-13319186 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 139 |
| Conread position: | 463-753 |
| Cow position: | chr24:12485642-12485348 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 463-754 |
| Cow position: | chr24:35838951-35838656 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 34 |
| Conread position: | 463-754 |
| Cow position: | chr24:36560396-36560114 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 98 |
| Conread position: | 468-766 |
| Cow position: | chr24:39030605-39030308 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 68, 76 |
| Conread position: | 480-754 |
| Cow position: | chr24:12567948-12568218 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 519-753 |
| Cow position: | chr24:2635851-2636089 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 620-754 |
| Cow position: | chr24:14584927-14585062 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 40, 14 |
Show alignments to all cow chromosomes.