Cow genome map

Conread name: Lng1-LNG010103A02

Conread position: 244-754
Cow position: chr9:4984060-4984556 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 36

Conread position: 246-739
Cow position: chr9:9012392-9012877 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 124

Conread position: 246-754
Cow position: chr9:20310434-20309950 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 337
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 17, 65

Conread position: 247-749
Cow position: chr9:16175055-16175544 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 402, 18

Conread position: 247-749
Cow position: chr9:37971921-37971430 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 18

Conread position: 247-759
Cow position: chr9:27033996-27034493 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 18

Conread position: 247-760
Cow position: chr9:418240-417743 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 21

Conread position: 248-757
Cow position: chr9:1996628-1996128 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 124

Conread position: 251-627
Cow position: chr9:10855490-10855852 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 260
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 187, 17

Conread position: 251-723
Cow position: chr9:51183417-51182960 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 251-739
Cow position: chr9:2199407-2199874 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 251-739
Cow position: chr9:31806830-31807304 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 14

Conread position: 251-743
Cow position: chr9:18510432-18509953 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 14

Conread position: 251-749
Cow position: chr9:2170349-2170832 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 14

Conread position: 251-749
Cow position: chr9:3548879-3548396 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 14

Conread position: 251-749
Cow position: chr9:10321118-10321599 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 17

Conread position: 251-749
Cow position: chr9:28020838-28021324 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 14

Conread position: 251-749
Cow position: chr9:29629456-29628970 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 14

Conread position: 251-749
Cow position: chr9:30671662-30672147 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 14

Conread position: 251-749
Cow position: chr9:42308973-42309459 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 14

Conread position: 251-749
Cow position: chr9:42568164-42568647 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 251-749
Cow position: chr9:59483373-59482896 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 251-753
Cow position: chr9:223264-222767 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 36

Conread position: 251-756
Cow position: chr9:47001504-47001986 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 14

Conread position: 251-769
Cow position: chr9:6831252-6830753 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 14

Conread position: 252-749
Cow position: chr9:5003305-5003789 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 13

Conread position: 252-749
Cow position: chr9:37163513-37163031 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 13

Conread position: 258-393
Cow position: chr9:1294588-1294453 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 261-384
Cow position: chr9:15071833-15071956 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 261-596
Cow position: chr9:8969735-8969422 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 208, 0

Conread position: 261-710
Cow position: chr9:33835005-33834535 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 220

Conread position: 261-744
Cow position: chr9:2488692-2488199 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 227

Conread position: 261-747
Cow position: chr9:59443127-59443627 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 222

Conread position: 261-754
Cow position: chr9:54359905-54360385 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 0

Conread position: 265-750
Cow position: chr9:6756876-6757350 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 74

Conread position: 266-755
Cow position: chr9:59174853-59174374 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 104

Conread position: 268-749
Cow position: chr9:59535411-59535874 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 395, 76

Conread position: 273-754
Cow position: chr9:17065109-17064615 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 142

Conread position: 280-749
Cow position: chr9:59456280-59455822 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 58

Conread position: 280-752
Cow position: chr9:6051719-6051267 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 291-712
Cow position: chr9:50788865-50789306 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 124

Conread position: 291-753
Cow position: chr9:781503-781024 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 123

Conread position: 291-753
Cow position: chr9:1252653-1252185 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 42

Conread position: 310-743
Cow position: chr9:7001902-7002324 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 79

Conread position: 310-755
Cow position: chr9:832085-831651 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 50

Conread position: 325-695
Cow position: chr9:12401577-12401967 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 89

Conread position: 335-673
Cow position: chr9:651725-651390 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 229
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 73, 36

Conread position: 341-754
Cow position: chr9:2500932-2500514 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 356-732
Cow position: chr9:3868117-3867744 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 259
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 55, 15

Conread position: 356-753
Cow position: chr9:164108-163709 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 114

Conread position: 356-753
Cow position: chr9:1076815-1076417 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 114

Conread position: 356-753
Cow position: chr9:4671991-4672389 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 67

Conread position: 356-753
Cow position: chr9:25483254-25483655 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 114

Conread position: 356-753
Cow position: chr9:27933476-27933876 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 114

Conread position: 356-753
Cow position: chr9:31194785-31194385 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 114

Conread position: 356-753
Cow position: chr9:34243216-34242816 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 114

Conread position: 356-753
Cow position: chr9:45872734-45873131 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 116

Conread position: 356-753
Cow position: chr9:46626415-46626017 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 67

Conread position: 356-759
Cow position: chr9:25755824-25755418 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 117

Conread position: 363-753
Cow position: chr9:16267750-16268143 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 107

Conread position: 367-754
Cow position: chr9:2185350-2185743 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 89

Conread position: 389-719
Cow position: chr9:22702444-22702104 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 229
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 38, 87

Conread position: 391-754
Cow position: chr9:37130120-37129755 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 23

Conread position: 395-736
Cow position: chr9:59510021-59510370 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 240
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 16, 74

Conread position: 402-754
Cow position: chr9:2051888-2052233 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 66

Conread position: 403-755
Cow position: chr9:64118286-64118614 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 256, 68

Conread position: 403-760
Cow position: chr9:52570104-52570447 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 20, 68

Conread position: 410-749
Cow position: chr9:4531930-4532271 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 58

Conread position: 410-749
Cow position: chr9:60278587-60278245 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 0

Conread position: 425-754
Cow position: chr9:3567405-3567071 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 429-755
Cow position: chr9:830097-829777 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 83

Conread position: 430-732
Cow position: chr9:31776403-31776707 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 213
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 88, 137

Conread position: 430-754
Cow position: chr9:8166547-8166236 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 156, 39

Conread position: 431-690
Cow position: chr9:3585760-3586020 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 190
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 227, 37

Conread position: 439-725
Cow position: chr9:60652004-60651711 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 13, 134

Conread position: 439-753
Cow position: chr9:36723968-36724283 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 31

Conread position: 444-753
Cow position: chr9:28677445-28677757 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 26

Conread position: 452-763
Cow position: chr9:26712840-26712529 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 261

Conread position: 455-685
Cow position: chr9:7062625-7062398 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 106, 17

Conread position: 455-753
Cow position: chr9:18836267-18836559 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 205
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 122, 29

Conread position: 456-762
Cow position: chr9:793022-792724 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 461-756
Cow position: chr9:34107233-34106934 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 213
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 100, 241

Conread position: 462-716
Cow position: chr9:7646714-7646460 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 91, 105

Conread position: 462-754
Cow position: chr9:10314868-10315150 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 41

Conread position: 463-754
Cow position: chr9:1294328-1294034 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 102, 156

Conread position: 463-754
Cow position: chr9:3155532-3155814 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 203, 122

Conread position: 463-754
Cow position: chr9:28626540-28626259 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 200, 121

Conread position: 463-754
Cow position: chr9:31020294-31020592 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 280

Conread position: 466-610
Cow position: chr9:34991143-34991284 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 467-754
Cow position: chr9:15072007-15072298 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 469-749
Cow position: chr9:22650649-22650933 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 205

Conread position: 471-731
Cow position: chr9:131708-131437 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 27

Conread position: 475-758
Cow position: chr9:1979447-1979725 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 479-759
Cow position: chr9:32968244-32968528 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 480-749
Cow position: chr9:29028724-29028452 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 487-736
Cow position: chr9:3394788-3394547 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 0

Conread position: 499-753
Cow position: chr9:5424648-5424403 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 24

Conread position: 509-734
Cow position: chr9:35657500-35657725 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 7, 59

Conread position: 512-753
Cow position: chr9:2697400-2697149 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 19, 0

Conread position: 567-753
Cow position: chr9:13219913-13220102 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 91, 0

Conread position: 597-749
Cow position: chr9:25023679-25023525 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 600-754
Cow position: chr9:8969298-8969144 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 125, 66

Conread position: 603-753
Cow position: chr9:9055438-9055284 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 61, 0

Show alignments to all cow chromosomes.