Cow genome map

Conread name: Lng1-LNG010103A02

Conread position: 236-749
Cow position: chrX:2483453-2482956 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 29

Conread position: 236-749
Cow position: chrX:16698481-16698982 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 28

Conread position: 236-749
Cow position: chrX:23392418-23391919 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 29

Conread position: 237-621
Cow position: chrX:35019836-35020201 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 268
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 11, 52

Conread position: 237-732
Cow position: chrX:26768017-26767530 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 145

Conread position: 243-754
Cow position: chrX:13051870-13052354 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 97

Conread position: 245-719
Cow position: chrX:3377036-3376571 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 37

Conread position: 246-638
Cow position: chrX:9901423-9901028 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 229

Conread position: 246-675
Cow position: chrX:26432158-26432580 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 272
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 121

Conread position: 246-724
Cow position: chrX:22131511-22131039 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 152

Conread position: 246-749
Cow position: chrX:26527168-26527658 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 22

Conread position: 246-749
Cow position: chrX:26759398-26758908 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 19

Conread position: 246-749
Cow position: chrX:30232915-30232421 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 125

Conread position: 246-753
Cow position: chrX:9007507-9008029 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 12

Conread position: 247-755
Cow position: chrX:16236510-16237001 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 22

Conread position: 247-759
Cow position: chrX:21222140-21222620 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 21

Conread position: 250-753
Cow position: chrX:5324549-5324036 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 165

Conread position: 250-753
Cow position: chrX:22620146-22619628 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 27

Conread position: 251-530
Cow position: chrX:318285-318548 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 192
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 251-697
Cow position: chrX:23276316-23276748 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 14

Conread position: 251-731
Cow position: chrX:25186857-25187324 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 14

Conread position: 251-739
Cow position: chrX:23456371-23455898 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 20

Conread position: 251-749
Cow position: chrX:1546131-1546617 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 14

Conread position: 251-749
Cow position: chrX:13413925-13413433 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 14

Conread position: 251-749
Cow position: chrX:15128043-15127559 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 14

Conread position: 251-749
Cow position: chrX:15598127-15598612 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 14

Conread position: 251-749
Cow position: chrX:21828733-21829206 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 14

Conread position: 251-749
Cow position: chrX:22487391-22487871 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 14

Conread position: 251-749
Cow position: chrX:32095754-32095280 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 14

Conread position: 251-749
Cow position: chrX:32466447-32466934 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 14

Conread position: 251-749
Cow position: chrX:38145258-38145742 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 14

Conread position: 251-749
Cow position: chrX:41151424-41151909 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 14

Conread position: 251-754
Cow position: chrX:21489402-21489918 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 27

Conread position: 251-756
Cow position: chrX:21586214-21586724 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 18

Conread position: 251-760
Cow position: chrX:2788017-2787524 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 327
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 299, 27

Conread position: 251-760
Cow position: chrX:29854367-29853870 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 14

Conread position: 254-762
Cow position: chrX:30710556-30711049 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 11

Conread position: 254-766
Cow position: chrX:2142511-2142997 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 35

Conread position: 255-697
Cow position: chrX:29283932-29284365 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 343, 14

Conread position: 256-754
Cow position: chrX:21602098-21602575 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 30

Conread position: 258-770
Cow position: chrX:26504392-26504895 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 67

Conread position: 259-754
Cow position: chrX:16017932-16017450 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 95

Conread position: 261-379
Cow position: chrX:31372160-31372278 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 261-436
Cow position: chrX:30046901-30046726 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 261-436
Cow position: chrX:40057845-40057670 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 261-452
Cow position: chrX:21290271-21290080 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 261-474
Cow position: chrX:35017045-35017257 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 73, 178

Conread position: 261-499
Cow position: chrX:30990734-30990502 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 170, 0

Conread position: 261-621
Cow position: chrX:14051253-14051631 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 241
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 129, 0

Conread position: 261-703
Cow position: chrX:12672367-12671908 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 219

Conread position: 261-731
Cow position: chrX:28549104-28549552 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 312
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 375, 136

Conread position: 261-753
Cow position: chrX:1833047-1833515 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 134

Conread position: 261-753
Cow position: chrX:2860624-2860114 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 226

Conread position: 261-753
Cow position: chrX:7092778-7093286 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 295

Conread position: 261-753
Cow position: chrX:14787682-14787185 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 153

Conread position: 261-753
Cow position: chrX:24325972-24325458 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 261-754
Cow position: chrX:25332300-25332776 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 99

Conread position: 261-754
Cow position: chrX:28651898-28651441 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 265-393
Cow position: chrX:31034904-31035031 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 266-592
Cow position: chrX:28553228-28553546 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 271-739
Cow position: chrX:5299987-5299532 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 117

Conread position: 273-755
Cow position: chrX:11669218-11668753 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 0

Conread position: 274-754
Cow position: chrX:31079749-31080220 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 15

Conread position: 283-755
Cow position: chrX:20699039-20698579 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 375, 94

Conread position: 290-753
Cow position: chrX:16274895-16275364 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 200

Conread position: 291-616
Cow position: chrX:30010159-30010501 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 230
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 99, 123

Conread position: 291-753
Cow position: chrX:8478915-8479392 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 192

Conread position: 299-754
Cow position: chrX:12182413-12182887 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 299-754
Cow position: chrX:20795835-20796291 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 293
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 50, 70

Conread position: 299-771
Cow position: chrX:30369743-30369294 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 309
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 48, 108

Conread position: 300-755
Cow position: chrX:22813635-22814075 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 77

Conread position: 302-718
Cow position: chrX:29794862-29794475 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 318-754
Cow position: chrX:24122655-24122230 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 107

Conread position: 326-756
Cow position: chrX:18532265-18532687 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 70

Conread position: 356-582
Cow position: chrX:22583634-22583407 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 147, 112

Conread position: 356-589
Cow position: chrX:978909-979141 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 157
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 114, 0

Conread position: 356-635
Cow position: chrX:15981196-15980918 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 181
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 82, 67

Conread position: 356-635
Cow position: chrX:28562966-28562686 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 199, 114

Conread position: 356-638
Cow position: chrX:21305227-21304946 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 191
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 114, 0

Conread position: 356-661
Cow position: chrX:12704625-12704320 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 114

Conread position: 356-683
Cow position: chrX:16565160-16565490 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 116

Conread position: 356-715
Cow position: chrX:31192472-31192124 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 235
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 23, 12

Conread position: 356-728
Cow position: chrX:29174309-29173939 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 76

Conread position: 356-731
Cow position: chrX:22610598-22610973 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 114

Conread position: 356-732
Cow position: chrX:12341483-12341863 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 114

Conread position: 356-740
Cow position: chrX:5337292-5336896 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 177

Conread position: 356-740
Cow position: chrX:9173076-9172692 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 114

Conread position: 356-743
Cow position: chrX:21339690-21340077 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 114

Conread position: 356-753
Cow position: chrX:2603338-2603736 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 67

Conread position: 356-753
Cow position: chrX:3085611-3085214 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 150

Conread position: 356-753
Cow position: chrX:3422152-3421752 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 114

Conread position: 356-753
Cow position: chrX:5284438-5284047 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 114

Conread position: 356-753
Cow position: chrX:5395675-5395276 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 114

Conread position: 356-753
Cow position: chrX:6873789-6873383 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 118

Conread position: 356-753
Cow position: chrX:7751194-7751586 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 114

Conread position: 356-753
Cow position: chrX:8586384-8586781 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 66

Conread position: 356-753
Cow position: chrX:8669881-8670280 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 114

Conread position: 356-753
Cow position: chrX:8963764-8963372 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 119

Conread position: 356-753
Cow position: chrX:9193354-9192957 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 114

Conread position: 356-753
Cow position: chrX:11465710-11465314 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 114

Conread position: 356-753
Cow position: chrX:12655459-12655066 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 112

Conread position: 356-753
Cow position: chrX:12804564-12804175 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 114

Conread position: 356-753
Cow position: chrX:13077402-13077007 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 114

Conread position: 356-753
Cow position: chrX:13097976-13097581 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 114

Conread position: 356-753
Cow position: chrX:13398826-13398429 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 34

Conread position: 356-753
Cow position: chrX:15180148-15179742 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 70

Conread position: 356-753
Cow position: chrX:16363835-16363435 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 114

Conread position: 356-753
Cow position: chrX:17479235-17478838 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 114

Conread position: 356-753
Cow position: chrX:18218689-18219084 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 198

Conread position: 356-753
Cow position: chrX:20316764-20316369 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 67

Conread position: 356-753
Cow position: chrX:20360643-20360244 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 114

Conread position: 356-753
Cow position: chrX:22526315-22525917 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 115

Conread position: 356-753
Cow position: chrX:24380595-24380998 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 356-753
Cow position: chrX:26401179-26400780 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 114

Conread position: 356-753
Cow position: chrX:27427030-27426629 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 114

Conread position: 356-753
Cow position: chrX:28506650-28506252 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 116

Conread position: 356-753
Cow position: chrX:28522411-28522010 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 115

Conread position: 356-753
Cow position: chrX:28759332-28758938 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 114

Conread position: 356-753
Cow position: chrX:37848297-37848701 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 120

Conread position: 356-753
Cow position: chrX:39521194-39521594 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 114

Conread position: 356-754
Cow position: chrX:5862685-5863085 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 117

Conread position: 356-754
Cow position: chrX:24485126-24484723 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 112

Conread position: 356-770
Cow position: chrX:31187946-31187529 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 116

Conread position: 357-646
Cow position: chrX:6576986-6577272 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 113, 0

Conread position: 357-732
Cow position: chrX:18955226-18954849 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 104

Conread position: 358-753
Cow position: chrX:2101157-2101546 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 110

Conread position: 362-754
Cow position: chrX:28635117-28634728 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 39

Conread position: 363-770
Cow position: chrX:12280961-12280549 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 107

Conread position: 367-753
Cow position: chrX:24088701-24089090 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 103

Conread position: 372-753
Cow position: chrX:30174356-30173975 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 65

Conread position: 372-755
Cow position: chrX:26629015-26628632 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 66

Conread position: 374-713
Cow position: chrX:6887053-6886721 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 235
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 12

Conread position: 391-739
Cow position: chrX:11534810-11535153 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 22

Conread position: 391-753
Cow position: chrX:13007304-13006947 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 22

Conread position: 391-754
Cow position: chrX:5834836-5834482 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 391-754
Cow position: chrX:20803465-20803815 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 10

Conread position: 391-754
Cow position: chrX:21633257-21632896 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 23

Conread position: 391-754
Cow position: chrX:24137072-24136707 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 10

Conread position: 391-754
Cow position: chrX:30046791-30046430 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 22

Conread position: 391-754
Cow position: chrX:40057735-40057377 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 22

Conread position: 401-754
Cow position: chrX:39717128-39717485 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 36

Conread position: 401-769
Cow position: chrX:21270833-21270480 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 252
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 262, 67

Conread position: 403-625
Cow position: chrX:9124735-9124944 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 403-760
Cow position: chrX:19927647-19928010 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 68

Conread position: 409-753
Cow position: chrX:30666598-30666251 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 61

Conread position: 410-653
Cow position: chrX:23041971-23041729 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 171, 27

Conread position: 410-735
Cow position: chrX:19185603-19185286 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 30, 59

Conread position: 418-746
Cow position: chrX:30179634-30179313 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 232
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 245, 22

Conread position: 429-732
Cow position: chrX:2380150-2380448 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 134, 78

Conread position: 429-753
Cow position: chrX:12289574-12289254 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 41

Conread position: 429-770
Cow position: chrX:7029550-7029895 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 41

Conread position: 431-754
Cow position: chrX:21290122-21289804 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 442-758
Cow position: chrX:29951191-29950882 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 27

Conread position: 444-731
Cow position: chrX:32430060-32430350 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 26

Conread position: 444-744
Cow position: chrX:37757166-37757452 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 199
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 444-755
Cow position: chrX:17668910-17668598 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 17

Conread position: 444-759
Cow position: chrX:27990401-27990087 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 120, 24

Conread position: 448-735
Cow position: chrX:8454138-8454424 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 22

Conread position: 450-744
Cow position: chrX:15252574-15252277 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 187
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 147, 18

Conread position: 455-755
Cow position: chrX:4795311-4795606 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 13

Conread position: 461-755
Cow position: chrX:12478117-12478410 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 195, 35

Conread position: 463-596
Cow position: chrX:30990560-30990427 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 463-750
Cow position: chrX:23046540-23046829 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 98

Conread position: 463-754
Cow position: chrX:24275065-24275360 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 0

Conread position: 463-754
Cow position: chrX:35017224-35017501 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 24

Conread position: 466-754
Cow position: chrX:22777712-22777999 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 472-749
Cow position: chrX:29092906-29093187 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 486-754
Cow position: chrX:6909916-6909647 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 23

Conread position: 487-755
Cow position: chrX:23018749-23019021 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 13, 0

Conread position: 491-749
Cow position: chrX:30184467-30184211 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 9, 5

Conread position: 505-753
Cow position: chrX:10532123-10531871 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 152, 0

Conread position: 520-754
Cow position: chrX:27494155-27494395 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 524-732
Cow position: chrX:28604355-28604136 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 31, 101

Conread position: 541-753
Cow position: chrX:7481078-7481290 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 541-754
Cow position: chrX:6276118-6275906 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 131
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 122, 59

Conread position: 541-754
Cow position: chrX:29873091-29872872 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 14, 0

Conread position: 569-717
Cow position: chrX:982166-982317 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 570-699
Cow position: chrX:24276006-24275873 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 578-739
Cow position: chrX:28553583-28553744 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 578-753
Cow position: chrX:2563349-2563170 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 85, 0

Conread position: 580-754
Cow position: chrX:12998050-12997874 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 75, 0

Conread position: 601-753
Cow position: chrX:28562679-28562526 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 149, 0

Conread position: 601-754
Cow position: chrX:21794631-21794786 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 125
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 54, 0

Conread position: 610-749
Cow position: chrX:18660232-18660100 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 626-753
Cow position: chrX:35529417-35529547 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 0

Show alignments to all cow chromosomes.