Cow genome map
| Conread name: | LyN1-MLN01A080063 |
| Conread position: | 13-392 |
| Cow position: | chr3:65581547-65581150 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 14-390 |
| Cow position: | chr3:36670930-36670556 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 16-392 |
| Cow position: | chr3:23497086-23496693 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 22-633 |
| Cow position: | chr3:46135434-46134782 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 45-390 |
| Cow position: | chr3:54434496-54434838 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 48-395 |
| Cow position: | chr3:2674555-2674895 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 74-565 |
| Cow position: | chr3:15571204-15571692 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 350 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 7, 133 |
| Conread position: | 86-390 |
| Cow position: | chr3:22021409-22021108 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 242-640 |
| Cow position: | chr3:48857798-48858175 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 265-636 |
| Cow position: | chr3:16622289-16621913 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 116, 47 |
| Conread position: | 266-683 |
| Cow position: | chr3:9420204-9419793 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 38 |
| Conread position: | 277-390 |
| Cow position: | chr3:55992120-55992006 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 8, 96 |
| Conread position: | 422-634 |
| Cow position: | chr3:50499771-50499980 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 422-660 |
| Cow position: | chr3:47497717-47497951 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 121, 24 |
| Conread position: | 425-639 |
| Cow position: | chr3:7562039-7561825 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 425-639 |
| Cow position: | chr3:73826962-73827181 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 197 |
| Conread position: | 425-658 |
| Cow position: | chr3:43967221-43966983 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 425-661 |
| Cow position: | chr3:79315373-79315609 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 428-647 |
| Cow position: | chr3:8275641-8275864 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 38, 14 |
| Conread position: | 428-658 |
| Cow position: | chr3:60947997-60947767 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 428-661 |
| Cow position: | chr3:24532011-24532249 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 429-659 |
| Cow position: | chr3:26581870-26581647 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 429-661 |
| Cow position: | chr3:32773404-32773622 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 434-624 |
| Cow position: | chr3:4555760-4555563 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 440-662 |
| Cow position: | chr3:16056536-16056306 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 130 |
| Conread position: | 445-633 |
| Cow position: | chr3:15329510-15329321 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 445-633 |
| Cow position: | chr3:40269341-40269153 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 445-636 |
| Cow position: | chr3:55896820-55897018 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 178 |
| Conread position: | 445-642 |
| Cow position: | chr3:63259840-63260037 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 449-628 |
| Cow position: | chr3:31924696-31924509 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 181 |
| Conread position: | 457-620 |
| Cow position: | chr3:54329120-54328954 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 458-636 |
| Cow position: | chr3:64435900-64435721 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 458-640 |
| Cow position: | chr3:49841277-49841095 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 461-639 |
| Cow position: | chr3:45435090-45435270 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 157 |
| Conread position: | 461-642 |
| Cow position: | chr3:26531897-26531719 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 461-651 |
| Cow position: | chr3:74846494-74846305 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 153 |
| Conread position: | 463-636 |
| Cow position: | chr3:56565378-56565554 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 156 |
| Conread position: | 468-614 |
| Cow position: | chr3:21655897-21656046 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 21, 115 |
| Conread position: | 469-614 |
| Cow position: | chr3:76381303-76381155 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 474-646 |
| Cow position: | chr3:8753708-8753881 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 125 |
| Conread position: | 474-656 |
| Cow position: | chr3:56164008-56164192 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 138 |
| Conread position: | 482-639 |
| Cow position: | chr3:66945177-66945018 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 132 |
| Conread position: | 487-640 |
| Cow position: | chr3:43431579-43431424 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 131 |
| Conread position: | 493-626 |
| Cow position: | chr3:19559974-19559840 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 89 |
| Conread position: | 493-640 |
| Cow position: | chr3:77065525-77065386 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 145, 72 |
| Conread position: | 493-640 |
| Cow position: | chr3:77067448-77067309 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 145, 72 |
| Conread position: | 493-641 |
| Cow position: | chr3:16170058-16169910 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 50, 88 |
| Conread position: | 494-652 |
| Cow position: | chr3:78442625-78442465 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 118 |
| Conread position: | 499-650 |
| Cow position: | chr3:13526904-13527049 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.