Cow genome map
| Conread name: | LyN1-MLN01A080063 |
| Conread position: | 13-397 |
| Cow position: | chrX:25302192-25301831 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 14-390 |
| Cow position: | chrX:30180382-30180011 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 14-392 |
| Cow position: | chrX:2185774-2186175 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 14-394 |
| Cow position: | chrX:4905446-4905070 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 14-658 |
| Cow position: | chrX:2701293-2700626 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 22-390 |
| Cow position: | chrX:27485955-27486323 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 59, 32 |
| Conread position: | 71-389 |
| Cow position: | chrX:28097730-28098031 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 88-389 |
| Cow position: | chrX:7718469-7718768 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 144-395 |
| Cow position: | chrX:15545569-15545811 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 95 |
| Conread position: | 271-661 |
| Cow position: | chrX:37138179-37137791 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 110, 71 |
| Conread position: | 273-390 |
| Cow position: | chrX:27683873-27683756 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 95, 63 |
| Conread position: | 276-390 |
| Cow position: | chrX:18989465-18989579 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 97, 101 |
| Conread position: | 422-652 |
| Cow position: | chrX:19127391-19127160 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 424-655 |
| Cow position: | chrX:27458475-27458249 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 425-568 |
| Cow position: | chrX:5660294-5660447 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 425-603 |
| Cow position: | chrX:8558210-8558026 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 21 |
| Conread position: | 425-628 |
| Cow position: | chrX:25453430-25453635 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 425-633 |
| Cow position: | chrX:18814418-18814628 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 425-651 |
| Cow position: | chrX:24203434-24203667 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 425-652 |
| Cow position: | chrX:18700113-18699878 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 425-653 |
| Cow position: | chrX:40353555-40353787 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 425-661 |
| Cow position: | chrX:25106464-25106707 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 425-662 |
| Cow position: | chrX:11675319-11675558 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 428-661 |
| Cow position: | chrX:4597467-4597229 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 428-661 |
| Cow position: | chrX:4625156-4625395 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 428-693 |
| Cow position: | chrX:21885863-21885588 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 444-627 |
| Cow position: | chrX:17516487-17516670 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 139 |
| Conread position: | 445-635 |
| Cow position: | chrX:24201440-24201635 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 445-639 |
| Cow position: | chrX:4794227-4794031 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 452-658 |
| Cow position: | chrX:2147597-2147798 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 454-627 |
| Cow position: | chrX:10462598-10462773 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 164 |
| Conread position: | 458-646 |
| Cow position: | chrX:13060827-13061017 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 463-655 |
| Cow position: | chrX:20504996-20505186 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 463-661 |
| Cow position: | chrX:19017955-19017755 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 151 |
| Conread position: | 465-644 |
| Cow position: | chrX:37067313-37067496 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 71 |
| Conread position: | 465-656 |
| Cow position: | chrX:4631084-4630894 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 472-633 |
| Cow position: | chrX:17200700-17200862 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 145 |
| Conread position: | 475-644 |
| Cow position: | chrX:37139604-37139771 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 94 |
| Conread position: | 479-644 |
| Cow position: | chrX:263821-263657 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 138 |
| Conread position: | 482-636 |
| Cow position: | chrX:5648158-5648004 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 493-658 |
| Cow position: | chrX:13403425-13403260 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 6 |
| Conread position: | 495-633 |
| Cow position: | chrX:38623140-38623272 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 514-683 |
| Cow position: | chrX:4019590-4019424 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 103 |
Show alignments to all cow chromosomes.