Cow genome map
| Conread name: | LyN1-MLN01A100079 |
| Conread position: | 11-372 |
| Cow position: | chr11:1493962-1493597 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 60, 158 |
| Conread position: | 11-479 |
| Cow position: | chr11:27667985-27667522 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 11-853 |
| Cow position: | chr11:73467659-73466797 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 89 |
| Conread position: | 12-347 |
| Cow position: | chr11:50948547-50948216 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 138 |
| Conread position: | 12-350 |
| Cow position: | chr11:87137045-87137394 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 59, 96 |
| Conread position: | 12-461 |
| Cow position: | chr11:40328113-40327663 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 146 |
| Conread position: | 12-467 |
| Cow position: | chr11:13795136-13794702 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 12-480 |
| Cow position: | chr11:55270772-55270306 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 9, 91 |
| Conread position: | 12-610 |
| Cow position: | chr11:21010623-21010030 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 12-846 |
| Cow position: | chr11:9577529-9576689 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 13-362 |
| Cow position: | chr11:23221407-23221060 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 58, 88 |
| Conread position: | 13-365 |
| Cow position: | chr11:2983385-2983034 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 89 |
| Conread position: | 13-504 |
| Cow position: | chr11:22717107-22717591 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 331 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 58, 86 |
| Conread position: | 13-660 |
| Cow position: | chr11:27053110-27052474 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 410 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 83, 58 |
| Conread position: | 13-701 |
| Cow position: | chr11:4885200-4884510 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 90 |
| Conread position: | 13-861 |
| Cow position: | chr11:45106621-45107472 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 89 |
| Conread position: | 13-868 |
| Cow position: | chr11:38575714-38574845 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 158 |
| Conread position: | 14-559 |
| Cow position: | chr11:24292235-24292774 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 15-868 |
| Cow position: | chr11:32453832-32454699 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 144 |
| Conread position: | 15-870 |
| Cow position: | chr11:44253849-44254714 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 144 |
| Conread position: | 16-213 |
| Cow position: | chr11:73459692-73459492 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 45, 85 |
| Conread position: | 16-283 |
| Cow position: | chr11:21446425-21446693 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 55, 139 |
| Conread position: | 16-308 |
| Cow position: | chr11:58138196-58138492 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 16-361 |
| Cow position: | chr11:12318235-12317884 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 144 |
| Conread position: | 16-363 |
| Cow position: | chr11:43512846-43512506 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 53, 141 |
| Conread position: | 16-400 |
| Cow position: | chr11:5482999-5483385 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 16-405 |
| Cow position: | chr11:47758490-47758096 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 57, 139 |
| Conread position: | 16-460 |
| Cow position: | chr11:29666812-29666367 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-465 |
| Cow position: | chr11:12356619-12356168 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 141 |
| Conread position: | 16-477 |
| Cow position: | chr11:73135079-73135541 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 6 |
| Conread position: | 16-496 |
| Cow position: | chr11:11590740-11591225 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 16-501 |
| Cow position: | chr11:24395093-24395576 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 16-559 |
| Cow position: | chr11:10092450-10092993 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 16-626 |
| Cow position: | chr11:8445347-8444731 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 140 |
| Conread position: | 16-670 |
| Cow position: | chr11:75392024-75392694 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-700 |
| Cow position: | chr11:66606955-66606245 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 16-782 |
| Cow position: | chr11:30670811-30671581 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-783 |
| Cow position: | chr11:10957595-10958373 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 149 |
| Conread position: | 16-786 |
| Cow position: | chr11:42371585-42372381 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 323 |
| Conread position: | 16-824 |
| Cow position: | chr11:28392663-28393488 (view UCSC Genome Browser custom track) |
| Alignm length: | 836 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 105 |
| Conread position: | 16-837 |
| Cow position: | chr11:53430250-53429414 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 139 |
| Conread position: | 16-844 |
| Cow position: | chr11:9249448-9248630 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 509 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 58, 159 |
| Conread position: | 16-850 |
| Cow position: | chr11:15987028-15987869 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-850 |
| Cow position: | chr11:85392052-85391225 (view UCSC Genome Browser custom track) |
| Alignm length: | 848 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-868 |
| Cow position: | chr11:47737766-47736907 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-868 |
| Cow position: | chr11:49238183-49237325 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 16-868 |
| Cow position: | chr11:52421244-52422107 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 107 |
| Conread position: | 16-870 |
| Cow position: | chr11:9155403-9154546 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 91 |
| Conread position: | 16-870 |
| Cow position: | chr11:17105906-17105049 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 16-870 |
| Cow position: | chr11:17547950-17548798 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-870 |
| Cow position: | chr11:19062295-19061434 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-870 |
| Cow position: | chr11:20732451-20731582 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 16-870 |
| Cow position: | chr11:30201913-30201052 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr11:32079007-32078139 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 16-870 |
| Cow position: | chr11:33602856-33601988 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 140 |
| Conread position: | 16-870 |
| Cow position: | chr11:41168923-41168054 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 141 |
| Conread position: | 16-870 |
| Cow position: | chr11:42310659-42309830 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 76 |
| Conread position: | 16-870 |
| Cow position: | chr11:44155311-44154438 (view UCSC Genome Browser custom track) |
| Alignm length: | 896 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 16-870 |
| Cow position: | chr11:57626402-57625536 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 163 |
| Conread position: | 16-870 |
| Cow position: | chr11:63391704-63390839 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 16-870 |
| Cow position: | chr11:71331277-71332142 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 147 |
| Conread position: | 16-870 |
| Cow position: | chr11:76372278-76371425 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 82 |
| Conread position: | 16-870 |
| Cow position: | chr11:84965889-84966754 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 17-717 |
| Cow position: | chr11:418948-418241 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 17-783 |
| Cow position: | chr11:9761999-9761217 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 94 |
| Conread position: | 17-870 |
| Cow position: | chr11:26123140-26122281 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 141 |
| Conread position: | 30-666 |
| Cow position: | chr11:85732242-85731577 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 408 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 129 |
| Conread position: | 32-503 |
| Cow position: | chr11:84739689-84740147 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 136 |
| Conread position: | 98-539 |
| Cow position: | chr11:78357640-78358080 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 64, 194 |
| Conread position: | 101-584 |
| Cow position: | chr11:85209543-85209058 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 127-772 |
| Cow position: | chr11:70436739-70437360 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 27 |
| Conread position: | 139-850 |
| Cow position: | chr11:26549405-26550102 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 12 |
| Conread position: | 154-869 |
| Cow position: | chr11:7228171-7228893 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 119 |
| Conread position: | 173-870 |
| Cow position: | chr11:25791412-25790721 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 67 |
| Conread position: | 301-708 |
| Cow position: | chr11:3882206-3881810 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 222, 47 |
| Conread position: | 353-660 |
| Cow position: | chr11:68513551-68513237 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 403-869 |
| Cow position: | chr11:26268410-26268863 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 60 |
| Conread position: | 420-831 |
| Cow position: | chr11:17938783-17938386 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 507-870 |
| Cow position: | chr11:84740349-84740717 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 119 |
Show alignments to all cow chromosomes.