Cow genome map
| Conread name: | LyN1-MLN01A100079 |
| Conread position: | 11-365 |
| Cow position: | chr16:48135910-48135563 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 64, 89 |
| Conread position: | 11-870 |
| Cow position: | chr16:5633925-5633077 (view UCSC Genome Browser custom track) |
| Alignm length: | 883 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 97 |
| Conread position: | 12-282 |
| Cow position: | chr16:3594588-3594315 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 83 |
| Conread position: | 12-319 |
| Cow position: | chr16:1959255-1958935 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 12-404 |
| Cow position: | chr16:48910455-48910070 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 12-442 |
| Cow position: | chr16:45232750-45233174 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 89 |
| Conread position: | 12-645 |
| Cow position: | chr16:26651988-26652637 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 12-709 |
| Cow position: | chr16:25948925-25948249 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 431 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 92 |
| Conread position: | 12-845 |
| Cow position: | chr16:30072773-30073593 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 12-870 |
| Cow position: | chr16:7675086-7674219 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 146 |
| Conread position: | 13-262 |
| Cow position: | chr16:2481774-2481515 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 11, 172 |
| Conread position: | 13-371 |
| Cow position: | chr16:44866086-44865721 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 56, 89 |
| Conread position: | 13-811 |
| Cow position: | chr16:7159137-7159953 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 13-869 |
| Cow position: | chr16:23720013-23719162 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 591 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 88 |
| Conread position: | 13-870 |
| Cow position: | chr16:28194930-28194059 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 163 |
| Conread position: | 14-559 |
| Cow position: | chr16:39035321-39034782 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 15-824 |
| Cow position: | chr16:41572782-41573603 (view UCSC Genome Browser custom track) |
| Alignm length: | 837 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 90 |
| Conread position: | 16-245 |
| Cow position: | chr16:18974505-18974738 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 16-319 |
| Cow position: | chr16:15047115-15046807 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 54, 144 |
| Conread position: | 16-331 |
| Cow position: | chr16:46103330-46103011 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 142 |
| Conread position: | 16-350 |
| Cow position: | chr16:41626186-41626522 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-365 |
| Cow position: | chr16:2273441-2273790 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 16-390 |
| Cow position: | chr16:20192792-20192422 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 16-402 |
| Cow position: | chr16:5663220-5663603 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 163 |
| Conread position: | 16-405 |
| Cow position: | chr16:25443006-25443398 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-447 |
| Cow position: | chr16:39645033-39645458 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 72 |
| Conread position: | 16-477 |
| Cow position: | chr16:2891139-2890674 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 16-477 |
| Cow position: | chr16:42162120-42162586 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 156 |
| Conread position: | 16-481 |
| Cow position: | chr16:29048403-29048872 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-625 |
| Cow position: | chr16:47787331-47787952 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-670 |
| Cow position: | chr16:21188607-21189277 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 139 |
| Conread position: | 16-717 |
| Cow position: | chr16:11284597-11285303 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 84 |
| Conread position: | 16-718 |
| Cow position: | chr16:26665107-26665806 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-774 |
| Cow position: | chr16:22800300-22799524 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 146 |
| Conread position: | 16-776 |
| Cow position: | chr16:41162091-41161322 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 155 |
| Conread position: | 16-815 |
| Cow position: | chr16:45800160-45800952 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 16-831 |
| Cow position: | chr16:16229681-16230515 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 152 |
| Conread position: | 16-831 |
| Cow position: | chr16:16992427-16993247 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 516 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 16-850 |
| Cow position: | chr16:15186445-15187289 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-850 |
| Cow position: | chr16:16268509-16267675 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 139 |
| Conread position: | 16-851 |
| Cow position: | chr16:47402759-47403606 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 103 |
| Conread position: | 16-868 |
| Cow position: | chr16:6944651-6945499 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 16-868 |
| Cow position: | chr16:28168944-28168079 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 16-870 |
| Cow position: | chr16:838662-839525 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 163 |
| Conread position: | 16-870 |
| Cow position: | chr16:1433570-1434438 (view UCSC Genome Browser custom track) |
| Alignm length: | 884 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 16-870 |
| Cow position: | chr16:3331298-3332153 (view UCSC Genome Browser custom track) |
| Alignm length: | 884 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 139 |
| Conread position: | 16-870 |
| Cow position: | chr16:3770636-3769769 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr16:5487141-5488011 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 144 |
| Conread position: | 16-870 |
| Cow position: | chr16:7465986-7466855 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 143 |
| Conread position: | 16-870 |
| Cow position: | chr16:10374305-10373425 (view UCSC Genome Browser custom track) |
| Alignm length: | 893 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 16-870 |
| Cow position: | chr16:12536573-12535697 (view UCSC Genome Browser custom track) |
| Alignm length: | 883 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 143 |
| Conread position: | 16-870 |
| Cow position: | chr16:15981009-15980136 (view UCSC Genome Browser custom track) |
| Alignm length: | 888 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr16:23250603-23249748 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 16-870 |
| Cow position: | chr16:25343350-25344219 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 125 |
| Conread position: | 16-870 |
| Cow position: | chr16:25456085-25455220 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr16:27731998-27731140 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 135 |
| Conread position: | 16-870 |
| Cow position: | chr16:31587329-31586455 (view UCSC Genome Browser custom track) |
| Alignm length: | 885 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 165 |
| Conread position: | 16-870 |
| Cow position: | chr16:40294786-40293929 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 124 |
| Conread position: | 16-870 |
| Cow position: | chr16:41165379-41164530 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr16:43895888-43895021 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 16-870 |
| Cow position: | chr16:52525608-52526473 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 142 |
| Conread position: | 16-870 |
| Cow position: | chr16:54323948-54323078 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 17-870 |
| Cow position: | chr16:2409514-2408653 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 84 |
| Conread position: | 17-870 |
| Cow position: | chr16:37479474-37478619 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 135 |
| Conread position: | 18-820 |
| Cow position: | chr16:52626750-52627559 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 19-528 |
| Cow position: | chr16:30697332-30696824 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 107 |
| Conread position: | 21-868 |
| Cow position: | chr16:23877145-23876290 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 137 |
| Conread position: | 29-870 |
| Cow position: | chr16:3145004-3144157 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 131 |
| Conread position: | 35-870 |
| Cow position: | chr16:10439643-10440480 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 124 |
| Conread position: | 73-620 |
| Cow position: | chr16:29739642-29739094 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 106-683 |
| Cow position: | chr16:42058457-42059035 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 48 |
| Conread position: | 137-870 |
| Cow position: | chr16:15537978-15538686 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 17 |
| Conread position: | 148-853 |
| Cow position: | chr16:47475531-47476233 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 72 |
| Conread position: | 172-870 |
| Cow position: | chr16:3149487-3148789 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 149 |
| Conread position: | 173-724 |
| Cow position: | chr16:52389914-52390461 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 30 |
| Conread position: | 199-869 |
| Cow position: | chr16:16031478-16032132 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 415 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 190, 29 |
| Conread position: | 203-745 |
| Cow position: | chr16:23464463-23465012 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 301-850 |
| Cow position: | chr16:55866388-55866946 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 347 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 150, 70 |
| Conread position: | 314-531 |
| Cow position: | chr16:46529961-46529745 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 126, 56 |
| Conread position: | 334-508 |
| Cow position: | chr16:38536242-38536068 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 345-830 |
| Cow position: | chr16:20750400-20750867 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 306 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 362-870 |
| Cow position: | chr16:54085685-54086174 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 95 |
| Conread position: | 400-870 |
| Cow position: | chr16:52474254-52473783 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 90 |
| Conread position: | 412-776 |
| Cow position: | chr16:33327339-33326982 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 99 |
| Conread position: | 502-869 |
| Cow position: | chr16:31620820-31620441 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 39 |
Show alignments to all cow chromosomes.